segmentation/CMakeLists.txt

   1 #=========================================================
   2
   3 INCLUDE(${PROJECT_SOURCE_DIR}/cmake/common.cmake)
   4
   5 #=========================================================
   6
   7 # Add Libraries used in vv and clitk to avoid recompilation
   8 FOREACH(clitkTool clitkExtractLung clitkExtractPatient)
   9     WRAP_GGO(${clitkTool}_GGO_C ${clitkTool}.ggo)
  10     SET(GGO_C_FILES ${GGO_C_FILES} ${${clitkTool}_GGO_C})
  11 ENDFOREACH(clitkTool)
  12 ADD_LIBRARY(clitkSegmentationGgoLib
  13             clitkFilterWithAnatomicalFeatureDatabaseManagement.cxx
  14             clitkAnatomicalFeatureDatabase.cxx
  15             ${GGO_C_FILES})
  16
  17 #=========================================================
  18
  19 IF(CLITK_BUILD_SEGMENTATION)
  20     WRAP_GGO(clitkConnectedComponentLabeling_GGO_C clitkConnectedComponentLabeling.ggo)
  21     ADD_EXECUTABLE(clitkConnectedComponentLabeling clitkConnectedComponentLabeling.cxx ${clitkConnectedComponentLabeling_GGO_C})
  22     TARGET_LINK_LIBRARIES(clitkConnectedComponentLabeling clitkCommon ${ITK_LIBRARIES})
  23     SET(SEGMENTATION_INSTALL clitkConnectedComponentLabeling)
  24
  25     WRAP_GGO(clitkFillMask_GGO_C clitkFillMask.ggo)
  26     ADD_EXECUTABLE(clitkFillMask clitkFillMask.cxx ${clitkFillMask_GGO_C})
  27     TARGET_LINK_LIBRARIES(clitkFillMask clitkCommon ${ITK_LIBRARIES})
  28     SET(SEGMENTATION_INSTALL ${SEGMENTATION_INSTALL} clitkFillMask)
  29
  30     ADD_EXECUTABLE(clitkExtractPatient clitkExtractPatient.cxx ${clitkExtractPatient_GGO_C})
  31     TARGET_LINK_LIBRARIES(clitkExtractPatient clitkCommon ${ITK_LIBRARIES} clitkSegmentationGgoLib)
  32     SET(SEGMENTATION_INSTALL ${SEGMENTATION_INSTALL} clitkExtractPatient)
  33
  34     ADD_EXECUTABLE(clitkExtractLung clitkExtractLung.cxx  ${clitkExtractLung_GGO_C})
  35     TARGET_LINK_LIBRARIES(clitkExtractLung clitkSegmentationGgoLib clitkCommon ${ITK_LIBRARIES})
  36     SET(SEGMENTATION_INSTALL ${SEGMENTATION_INSTALL} clitkExtractLung)
  37
  38     # WRAP_GGO(clitkExtractAirwaysTreeInfo_GGO_C clitkExtractAirwaysTreeInfo.ggo)
  39     # ADD_EXECUTABLE(clitkExtractAirwaysTreeInfo clitkExtractAirwaysTreeInfo.cxx ${clitkExtractAirwaysTreeInfo_GGO_C})
  40     # TARGET_LINK_LIBRARIES(clitkExtractAirwaysTreeInfo clitkSegmentationGgoLib clitkCommon ${ITK_LIBRARIES})
  41     # SET(SEGMENTATION_INSTALL ${SEGMENTATION_INSTALL} clitkExtractAirwaysTreeInfo)
  42
  43     WRAP_GGO(clitkExtractBones_GGO_C clitkExtractBones.ggo)
  44     ADD_EXECUTABLE(clitkExtractBones clitkExtractBones.cxx ${clitkExtractBones_GGO_C})
  45     TARGET_LINK_LIBRARIES(clitkExtractBones clitkCommon ${ITK_LIBRARIES} clitkSegmentationGgoLib)
  46     SET(SEGMENTATION_INSTALL ${SEGMENTATION_INSTALL} clitkExtractBones)
  47
  48     WRAP_GGO(clitkBool_GGO_C clitkBool.ggo)
  49     ADD_EXECUTABLE(clitkBool clitkBool.cxx ${clitkBool_GGO_C})
  50     TARGET_LINK_LIBRARIES(clitkBool clitkCommon ${ITK_LIBRARIES} clitkSegmentationGgoLib)
  51     SET(SEGMENTATION_INSTALL ${SEGMENTATION_INSTALL} clitkBool)
  52
  53     WRAP_GGO(clitkExtractMediastinum_GGO_C clitkExtractMediastinum.ggo)
  54     ADD_EXECUTABLE(clitkExtractMediastinum clitkExtractMediastinum.cxx ${clitkExtractMediastinum_GGO_C})
  55     TARGET_LINK_LIBRARIES(clitkExtractMediastinum clitkCommon clitkSegmentationGgoLib ${ITK_LIBRARIES})
  56     SET(SEGMENTATION_INSTALL ${SEGMENTATION_INSTALL} clitkExtractMediastinum)
  57
  58     WRAP_GGO(clitkExtractLymphStations_GGO_C clitkExtractLymphStations.ggo)
  59     ADD_EXECUTABLE(clitkExtractLymphStations clitkExtractLymphStations.cxx clitkFilterWithAnatomicalFeatureDatabaseManagement.cxx ${clitkExtractLymphStations_GGO_C})
  60     TARGET_LINK_LIBRARIES(clitkExtractLymphStations clitkSegmentationGgoLib clitkCommon vtkHybrid)
  61     SET(SEGMENTATION_INSTALL ${SEGMENTATION_INSTALL} clitkExtractLymphStations)
  62
  63     WRAP_GGO(clitkExtractMediastinalVessels_GGO_C clitkExtractMediastinalVessels.ggo)
  64     ADD_EXECUTABLE(clitkExtractMediastinalVessels clitkExtractMediastinalVessels.cxx clitkFilterWithAnatomicalFeatureDatabaseManagement.cxx ${clitkExtractMediastinalVessels_GGO_C})
  65     TARGET_LINK_LIBRARIES(clitkExtractMediastinalVessels clitkSegmentationGgoLib clitkCommon vtkHybrid)
  66     SET(SEGMENTATION_INSTALL ${SEGMENTATION_INSTALL} clitkExtractMediastinalVessels)
  67
  68     WRAP_GGO(clitkMorphoMath_GGO_C clitkMorphoMath.ggo)
  69     ADD_EXECUTABLE(clitkMorphoMath clitkMorphoMath.cxx ${clitkMorphoMath_GGO_C})
  70     TARGET_LINK_LIBRARIES(clitkMorphoMath clitkCommon ${ITK_LIBRARIES})
  71     SET(SEGMENTATION_INSTALL ${SEGMENTATION_INSTALL} clitkMorphoMath)
  72
  73     WRAP_GGO(clitkMorphoReconstruction_GGO_C clitkMorphoReconstruction.ggo)
  74     ADD_EXECUTABLE(clitkMorphoReconstruction clitkMorphoReconstruction.cxx clitkMorphoReconstructionGenericFilter.cxx ${clitkMorphoReconstruction_GGO_C})
  75     TARGET_LINK_LIBRARIES(clitkMorphoReconstruction clitkSegmentationGgoLib clitkCommon ${ITK_LIBRARIES})
  76     SET(SEGMENTATION_INSTALL ${SEGMENTATION_INSTALL} clitkMorphoReconstruction)
  77
  78     WRAP_GGO(clitkCalculateDistanceMap_GGO_C clitkCalculateDistanceMap.ggo)
  79     ADD_EXECUTABLE(clitkCalculateDistanceMap clitkCalculateDistanceMap.cxx clitkCalculateDistanceMapGenericFilter.cxx ${clitkCalculateDistanceMap_GGO_C})
  80     TARGET_LINK_LIBRARIES(clitkCalculateDistanceMap clitkCommon ${ITK_LIBRARIES})
  81     SET(SEGMENTATION_INSTALL ${SEGMENTATION_INSTALL} clitkCalculateDistanceMap)
  82
  83     WRAP_GGO(clitkLevelSetSegmentation_GGO_C clitkLevelSetSegmentation.ggo)
  84     ADD_EXECUTABLE(clitkLevelSetSegmentation clitkLevelSetSegmentation.cxx clitkLevelSetSegmentationGenericFilter.cxx ${clitkLevelSetSegmentation_GGO_C})
  85     TARGET_LINK_LIBRARIES(clitkLevelSetSegmentation clitkCommon ${ITK_LIBRARIES})
  86     SET(SEGMENTATION_INSTALL ${SEGMENTATION_INSTALL} clitkLevelSetSegmentation)
  87
  88     WRAP_GGO(clitkAnd_GGO_C clitkAnd.ggo)
  89     ADD_EXECUTABLE(clitkAnd clitkAnd.cxx clitkAndGenericFilter.cxx ${clitkAnd_GGO_C})
  90     TARGET_LINK_LIBRARIES(clitkAnd clitkCommon ${ITK_LIBRARIES} )
  91     SET(SEGMENTATION_INSTALL ${SEGMENTATION_INSTALL} clitkAnd)
  92
  93     WRAP_GGO(clitkRegionGrowing_GGO_C clitkRegionGrowing.ggo)
  94     ADD_EXECUTABLE(clitkRegionGrowing clitkRegionGrowing.cxx clitkRegionGrowingGenericFilter.cxx ${clitkRegionGrowing_GGO_C})
  95     TARGET_LINK_LIBRARIES(clitkRegionGrowing clitkCommon ${ITK_LIBRARIES})
  96     SET(SEGMENTATION_INSTALL ${SEGMENTATION_INSTALL} clitkRegionGrowing)
  97
  98     WRAP_GGO(clitkDecomposeAndReconstruct_GGO_C clitkDecomposeAndReconstruct.ggo)
  99     ADD_EXECUTABLE(clitkDecomposeAndReconstruct clitkDecomposeAndReconstruct.cxx clitkDecomposeAndReconstructGenericFilter.cxx ${clitkDecomposeAndReconstruct_GGO_C})
 100     TARGET_LINK_LIBRARIES(clitkDecomposeAndReconstruct clitkCommon ${ITK_LIBRARIES})
 101     SET(SEGMENTATION_INSTALL ${SEGMENTATION_INSTALL} clitkDecomposeAndReconstruct)
 102
 103     WRAP_GGO(clitkMotionMask_GGO_C clitkMotionMask.ggo)
 104     ADD_EXECUTABLE(clitkMotionMask clitkMotionMask.cxx clitkMotionMaskGenericFilter.cxx ${clitkMotionMask_GGO_C})
 105     TARGET_LINK_LIBRARIES(clitkMotionMask clitkCommon ${ITK_LIBRARIES})
 106     SET(SEGMENTATION_INSTALL ${SEGMENTATION_INSTALL} clitkMotionMask)
 107
 108     WRAP_GGO(clitkFillImageRegion_GGO_C clitkFillImageRegion.ggo)
 109     ADD_EXECUTABLE(clitkFillImageRegion clitkFillImageRegion.cxx clitkFillImageRegionGenericFilter.cxx ${clitkFillImageRegion_GGO_C})
 110     TARGET_LINK_LIBRARIES(clitkFillImageRegion clitkCommon ${ITK_LIBRARIES})
 111     SET(SEGMENTATION_INSTALL ${SEGMENTATION_INSTALL} clitkFillImageRegion)
 112
 113     # WRAP_GGO(clitkTestFilter_GGO_C clitkTestFilter.ggo)
 114     # ADD_EXECUTABLE(clitkTestFilter clitkTestFilter.cxx ${clitkTestFilter_GGO_C})
 115     # TARGET_LINK_LIBRARIES(clitkTestFilter clitkSegmentationGgoLib clitkCommon vtkHybrid)
 116     # SET(SEGMENTATION_INSTALL ${SEGMENTATION_INSTALL} clitkTestFilter)
 117
 118     SET_TARGET_PROPERTIES(${SEGMENTATION_INSTALL} PROPERTIES INSTALL_RPATH "${VTK_DIR}:${ITK_DIR}" )
 119     INSTALL (TARGETS ${SEGMENTATION_INSTALL} DESTINATION bin PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_EXECUTE WORLD_EXECUTE)
 120
 121 ENDIF(CLITK_BUILD_SEGMENTATION)
 122
 123 # ADD_EXECUTABLE(ScalarImageMarkovRandomField1 ScalarImageMarkovRandomField1.cxx)
 124 # TARGET_LINK_LIBRARIES(ScalarImageMarkovRandomField1 clitkCommon ${ITK_LIBRARIES} ITKStatistics)
 125 # ADD_EXECUTABLE(ScalarImageKmeansClassifier ScalarImageKmeansClassifier.cxx)
 126 # TARGET_LINK_LIBRARIES(ScalarImageKmeansClassifier clitkCommon ${ITK_LIBRARIES} ITKStatistics)
 127
 128