segmentation/clitkExtractLymphStation_6.txx

   1
   2
   3 //--------------------------------------------------------------------
   4 template <class ImageType>
   5 void
   6 clitk::ExtractLymphStationsFilter<ImageType>::
   7 ExtractStation_6_SetDefaultValues()
   8 {
   9 }
  10 //--------------------------------------------------------------------
  11
  12
  13 //--------------------------------------------------------------------
  14 template <class TImageType>
  15 void
  16 clitk::ExtractLymphStationsFilter<TImageType>::
  17 ExtractStation_6() {
  18   if ((!CheckForStation("6")) && (!CheckForStation("6"))) return;
  19
  20   StartNewStep("Stations 6");
  21   StartSubStep();
  22
  23   // Get the current support
  24   StartNewStep("[Station 6] Get the current 6 suppport");
  25   m_ListOfStations["6"] = m_ListOfSupports["S6"];
  26   StopCurrentStep<MaskImageType>(m_ListOfStations["6"]);
  27
  28   // Generic RelativePosition processes
  29   m_ListOfStations["6"] = this->ApplyRelativePositionList("Station_6", m_ListOfStations["6"]);
  30
  31   // Remove some structures
  32   m_Working_Support = m_ListOfStations["6"];
  33   Remove_Structures(" 6", "Aorta");
  34   Remove_Structures(" 6", "SVC");
  35   Remove_Structures(" 6", "BrachioCephalicVein");
  36   m_ListOfStations["6"] = m_Working_Support;
  37
  38   // Keep only one single CCL by slice
  39   StartNewStep("[Station 6] Keep only one CCL by slice");
  40   m_ListOfStations["6"] = SliceBySliceKeepMainCCL<MaskImageType>(m_ListOfStations["6"],
  41                                                                   GetBackgroundValue(),
  42                                                                   GetForegroundValue());
  43   StopCurrentStep<MaskImageType>(m_ListOfStations["6"]);
  44
  45   // Store image filenames into AFDB
  46   writeImage<MaskImageType>(m_ListOfStations["6"], "seg/Station6.mhd");
  47   GetAFDB()->SetImageFilename("Station6", "seg/Station6.mhd");
  48   WriteAFDB();
  49   StopSubStep();
  50
  51 }
  52 //--------------------------------------------------------------------
  53
  54