tools/clitkRigidRegistration.cxx

   1 /*-------------------------------------------------------------------------
   2
   3   Program:   clitk
   4   Module:    $RCSfile: clitkRigidRegistration.cxx,v $
   5   Language:  C++
   6   Date:      $Date: 2010/01/06 13:31:57 $
   7   Version:   $Revision: 1.1 $
   8
   9   Copyright (c) CREATIS (Centre de Recherche et d'Applications en Traitement de
  10   l'Image). All rights reserved. See Doc/License.txt or
  11   http://www.creatis.insa-lyon.fr/Public/Gdcm/License.html for details.
  12
  13      This software is distributed WITHOUT ANY WARRANTY; without even
  14      the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
  15      PURPOSE.  See the above copyright notices for more information.
  16
  17 -------------------------------------------------------------------------*/
  18
  19 /**
  20  -------------------------------------------------
  21  * @file   clitkRigidRegistration.cxx
  22  * @author Jef Vandemeulebroucke <jef.Vandemeulebroucke@creatis.insa-lyon.fr>
  23  * @date   14 August 2007
  24  *
  25  * @brief Perform a rigid registration between 2 images
  26  *
  27  -------------------------------------------------*/
  28
  29
  30 // clitk include
  31 #include "clitkIO.h"
  32 #include "clitkImageCommon.h"
  33 #include "clitkRigidRegistration_ggo.h"
  34 #include "clitkRigidRegistrationGenericFilter.h"
  35
  36 using namespace clitk;
  37 using namespace std;
  38
  39
  40 int main( int argc, char *argv[] )
  41 {
  42   //init command line and check options
  43   GGO(args_info);
  44   CLITK_INIT;
  45
  46   //---------------------------------------------------------------------------
  47   //Set all the options passed through the commandline
  48
  49   RigidRegistrationGenericFilter rigidRegistration;
  50
  51   rigidRegistration.SetVerbose(args_info.verbose_flag);
  52   rigidRegistration.SetGradient(args_info.gradient_flag);
  53   rigidRegistration.SetZeroOrigin(args_info.zero_origin_flag);
  54
  55  //Input
  56   rigidRegistration.SetFixedImageName(args_info.reference_arg);
  57   rigidRegistration.SetMovingImageName(args_info.object_arg);
  58   rigidRegistration.SetFixedImageMaskGiven(args_info.mask_given);
  59   if (args_info.mask_given)   rigidRegistration.SetFixedImageMaskName(args_info.mask_arg);
  60
  61   //Output
  62   rigidRegistration.SetOutputGiven(args_info.output_given);
  63   if (args_info.output_given)  rigidRegistration.SetOutputName(args_info.output_arg);
  64   rigidRegistration.SetCheckerAfterGiven(args_info.checker_after_given);
  65   if (args_info.checker_after_given)  rigidRegistration.SetCheckerAfterName(args_info.checker_after_arg);
  66   rigidRegistration.SetCheckerBeforeGiven(args_info.checker_before_given);
  67   if (args_info.checker_before_given)  rigidRegistration.SetCheckerBeforeName(args_info.checker_before_arg);
  68   rigidRegistration.SetBeforeGiven(args_info.before_given);
  69   if (args_info.before_given)  rigidRegistration.SetBeforeName(args_info.before_arg);
  70   rigidRegistration.SetAfterGiven(args_info.after_given);
  71   if (args_info.after_given)  rigidRegistration.SetAfterName(args_info.after_arg);
  72   rigidRegistration.SetMatrixGiven(args_info.matrix_given);
  73   if (args_info.matrix_given)  rigidRegistration.SetMatrixName(args_info.matrix_arg);
  74
  75   //Interp
  76   rigidRegistration.SetInterpType(args_info.interp_arg);
  77
  78   //Transform
  79   rigidRegistration.SetRotX(args_info.rotX_arg);
  80   rigidRegistration.SetRotY(args_info.rotY_arg);
  81   rigidRegistration.SetRotZ(args_info.rotZ_arg);
  82   rigidRegistration.SetTransX(args_info.transX_arg);
  83   rigidRegistration.SetTransY(args_info.transY_arg);
  84   rigidRegistration.SetTransZ(args_info.transZ_arg);
  85
  86   //Optimizer
  87   rigidRegistration.SetLevels(args_info.levels_arg);
  88   rigidRegistration.SetIstep(args_info.Istep_arg);
  89   rigidRegistration.SetFstep(args_info.Fstep_arg);
  90   rigidRegistration.SetRelax(args_info.relax_arg);
  91   rigidRegistration.SetInc(args_info.inc_arg);
  92   rigidRegistration.SetDec(args_info.dec_arg);
  93   rigidRegistration.SetIter(args_info.iter_arg);
  94   rigidRegistration.SetRweight(args_info.Rweight_arg);
  95   rigidRegistration.SetTweight(args_info.Tweight_arg);
  96
  97   //Metric
  98   rigidRegistration.SetMetricType(args_info.metric_arg);
  99   rigidRegistration.SetSamples(args_info.samples_arg);
 100   rigidRegistration.SetBins(args_info.bins_arg);
 101   rigidRegistration.SetRandom(args_info.random_flag);
 102   rigidRegistration.SetStdDev(args_info.stdDev_arg);
 103
 104   //Preprocessing
 105   rigidRegistration.SetBlur(args_info.blur_arg);
 106   rigidRegistration.SetNormalize(args_info.normalize_flag);
 107
 108   rigidRegistration.Update();
 109
 110 }