tools/clitkRigidRegistration.cxx

   1 /**
   2  -------------------------------------------------
   3  * @file   clitkRigidRegistration.cxx
   4  * @author Jef Vandemeulebroucke <jef.Vandemeulebroucke@creatis.insa-lyon.fr>
   5  * @date   14 August 2007
   6  *
   7  * @brief Perform a rigid registration between 2 images
   8  *
   9  -------------------------------------------------*/
  10
  11
  12 // clitk include
  13 #include "clitkIO.h"
  14 #include "clitkImageCommon.h"
  15 #include "clitkRigidRegistration_ggo.h"
  16 #include "clitkRigidRegistrationGenericFilter.h"
  17
  18 using namespace clitk;
  19 using namespace std;
  20
  21
  22 int main( int argc, char *argv[] )
  23 {
  24   //init command line and check options
  25   GGO(args_info);
  26   CLITK_INIT;
  27
  28   //---------------------------------------------------------------------------
  29   //Set all the options passed through the commandline
  30
  31   RigidRegistrationGenericFilter rigidRegistration;
  32
  33   rigidRegistration.SetVerbose(args_info.verbose_flag);
  34   rigidRegistration.SetGradient(args_info.gradient_flag);
  35   rigidRegistration.SetZeroOrigin(args_info.zero_origin_flag);
  36
  37  //Input
  38   rigidRegistration.SetFixedImageName(args_info.reference_arg);
  39   rigidRegistration.SetMovingImageName(args_info.object_arg);
  40   rigidRegistration.SetFixedImageMaskGiven(args_info.mask_given);
  41   if (args_info.mask_given)   rigidRegistration.SetFixedImageMaskName(args_info.mask_arg);
  42
  43   //Output
  44   rigidRegistration.SetOutputGiven(args_info.output_given);
  45   if (args_info.output_given)  rigidRegistration.SetOutputName(args_info.output_arg);
  46   rigidRegistration.SetCheckerAfterGiven(args_info.checker_after_given);
  47   if (args_info.checker_after_given)  rigidRegistration.SetCheckerAfterName(args_info.checker_after_arg);
  48   rigidRegistration.SetCheckerBeforeGiven(args_info.checker_before_given);
  49   if (args_info.checker_before_given)  rigidRegistration.SetCheckerBeforeName(args_info.checker_before_arg);
  50   rigidRegistration.SetBeforeGiven(args_info.before_given);
  51   if (args_info.before_given)  rigidRegistration.SetBeforeName(args_info.before_arg);
  52   rigidRegistration.SetAfterGiven(args_info.after_given);
  53   if (args_info.after_given)  rigidRegistration.SetAfterName(args_info.after_arg);
  54   rigidRegistration.SetMatrixGiven(args_info.matrix_given);
  55   if (args_info.matrix_given)  rigidRegistration.SetMatrixName(args_info.matrix_arg);
  56
  57   //Interp
  58   rigidRegistration.SetInterpType(args_info.interp_arg);
  59
  60   //Transform
  61   rigidRegistration.SetRotX(args_info.rotX_arg);
  62   rigidRegistration.SetRotY(args_info.rotY_arg);
  63   rigidRegistration.SetRotZ(args_info.rotZ_arg);
  64   rigidRegistration.SetTransX(args_info.transX_arg);
  65   rigidRegistration.SetTransY(args_info.transY_arg);
  66   rigidRegistration.SetTransZ(args_info.transZ_arg);
  67
  68   //Optimizer
  69   rigidRegistration.SetLevels(args_info.levels_arg);
  70   rigidRegistration.SetIstep(args_info.Istep_arg);
  71   rigidRegistration.SetFstep(args_info.Fstep_arg);
  72   rigidRegistration.SetRelax(args_info.relax_arg);
  73   rigidRegistration.SetInc(args_info.inc_arg);
  74   rigidRegistration.SetDec(args_info.dec_arg);
  75   rigidRegistration.SetIter(args_info.iter_arg);
  76   rigidRegistration.SetRweight(args_info.Rweight_arg);
  77   rigidRegistration.SetTweight(args_info.Tweight_arg);
  78
  79   //Metric
  80   rigidRegistration.SetMetricType(args_info.metric_arg);
  81   rigidRegistration.SetSamples(args_info.samples_arg);
  82   rigidRegistration.SetBins(args_info.bins_arg);
  83   rigidRegistration.SetRandom(args_info.random_flag);
  84   rigidRegistration.SetStdDev(args_info.stdDev_arg);
  85
  86   //Preprocessing
  87   rigidRegistration.SetBlur(args_info.blur_arg);
  88   rigidRegistration.SetNormalize(args_info.normalize_flag);
  89
  90   rigidRegistration.Update();
  91
  92 }