tools/clitkRigidRegistration.cxx

   1 /*=========================================================================
   2   Program:   vv                     http://www.creatis.insa-lyon.fr/rio/vv
   3
   4   Authors belong to:
   5   - University of LYON              http://www.universite-lyon.fr/
   6   - Léon Bérard cancer center       http://oncora1.lyon.fnclcc.fr
   7   - CREATIS CNRS laboratory         http://www.creatis.insa-lyon.fr
   8
   9   This software is distributed WITHOUT ANY WARRANTY; without even
  10   the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
  11   PURPOSE.  See the copyright notices for more information.
  12
  13   It is distributed under dual licence
  14
  15   - BSD        See included LICENSE.txt file
  16   - CeCILL-B   http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
  17 ======================================================================-====*/
  18 /**
  19  -------------------------------------------------
  20  * @file   clitkRigidRegistration.cxx
  21  * @author Jef Vandemeulebroucke <jef.Vandemeulebroucke@creatis.insa-lyon.fr>
  22  * @date   14 August 2007
  23  *
  24  * @brief Perform a rigid registration between 2 images
  25  *
  26  -------------------------------------------------*/
  27
  28
  29 // clitk include
  30 #include "clitkIO.h"
  31 #include "clitkImageCommon.h"
  32 #include "clitkRigidRegistration_ggo.h"
  33 #include "clitkRigidRegistrationGenericFilter.h"
  34
  35 using namespace clitk;
  36 using namespace std;
  37
  38
  39 int main( int argc, char *argv[] )
  40 {
  41   //init command line and check options
  42   GGO(args_info);
  43   CLITK_INIT;
  44
  45   //---------------------------------------------------------------------------
  46   //Set all the options passed through the commandline
  47
  48   RigidRegistrationGenericFilter rigidRegistration;
  49
  50   rigidRegistration.SetVerbose(args_info.verbose_flag);
  51   rigidRegistration.SetGradient(args_info.gradient_flag);
  52   rigidRegistration.SetZeroOrigin(args_info.zero_origin_flag);
  53
  54  //Input
  55   rigidRegistration.SetFixedImageName(args_info.reference_arg);
  56   rigidRegistration.SetMovingImageName(args_info.object_arg);
  57   rigidRegistration.SetFixedImageMaskGiven(args_info.mask_given);
  58   if (args_info.mask_given)   rigidRegistration.SetFixedImageMaskName(args_info.mask_arg);
  59
  60   //Output
  61   rigidRegistration.SetOutputGiven(args_info.output_given);
  62   if (args_info.output_given)  rigidRegistration.SetOutputName(args_info.output_arg);
  63   rigidRegistration.SetCheckerAfterGiven(args_info.checker_after_given);
  64   if (args_info.checker_after_given)  rigidRegistration.SetCheckerAfterName(args_info.checker_after_arg);
  65   rigidRegistration.SetCheckerBeforeGiven(args_info.checker_before_given);
  66   if (args_info.checker_before_given)  rigidRegistration.SetCheckerBeforeName(args_info.checker_before_arg);
  67   rigidRegistration.SetBeforeGiven(args_info.before_given);
  68   if (args_info.before_given)  rigidRegistration.SetBeforeName(args_info.before_arg);
  69   rigidRegistration.SetAfterGiven(args_info.after_given);
  70   if (args_info.after_given)  rigidRegistration.SetAfterName(args_info.after_arg);
  71   rigidRegistration.SetMatrixGiven(args_info.matrix_given);
  72   if (args_info.matrix_given)  rigidRegistration.SetMatrixName(args_info.matrix_arg);
  73
  74   //Interp
  75   rigidRegistration.SetInterpType(args_info.interp_arg);
  76
  77   //Transform
  78   rigidRegistration.SetRotX(args_info.rotX_arg);
  79   rigidRegistration.SetRotY(args_info.rotY_arg);
  80   rigidRegistration.SetRotZ(args_info.rotZ_arg);
  81   rigidRegistration.SetTransX(args_info.transX_arg);
  82   rigidRegistration.SetTransY(args_info.transY_arg);
  83   rigidRegistration.SetTransZ(args_info.transZ_arg);
  84
  85   //Optimizer
  86   rigidRegistration.SetLevels(args_info.levels_arg);
  87   rigidRegistration.SetIstep(args_info.Istep_arg);
  88   rigidRegistration.SetFstep(args_info.Fstep_arg);
  89   rigidRegistration.SetRelax(args_info.relax_arg);
  90   rigidRegistration.SetInc(args_info.inc_arg);
  91   rigidRegistration.SetDec(args_info.dec_arg);
  92   rigidRegistration.SetIter(args_info.iter_arg);
  93   rigidRegistration.SetRweight(args_info.Rweight_arg);
  94   rigidRegistration.SetTweight(args_info.Tweight_arg);
  95
  96   //Metric
  97   rigidRegistration.SetMetricType(args_info.metric_arg);
  98   rigidRegistration.SetSamples(args_info.samples_arg);
  99   rigidRegistration.SetBins(args_info.bins_arg);
 100   rigidRegistration.SetRandom(args_info.random_flag);
 101   rigidRegistration.SetStdDev(args_info.stdDev_arg);
 102
 103   //Preprocessing
 104   rigidRegistration.SetBlur(args_info.blur_arg);
 105   rigidRegistration.SetNormalize(args_info.normalize_flag);
 106
 107   rigidRegistration.Update();
 108
 109 }