1 /*=========================================================================
2 Program: vv http://www.creatis.insa-lyon.fr/rio/vv
5 - University of LYON http://www.universite-lyon.fr/
6 - Léon Bérard cancer center http://www.centreleonberard.fr
7 - CREATIS CNRS laboratory http://www.creatis.insa-lyon.fr
9 This software is distributed WITHOUT ANY WARRANTY; without even
10 the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
11 PURPOSE. See the copyright notices for more information.
13 It is distributed under dual licence
15 - BSD See included LICENSE.txt file
16 - CeCILL-B http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
17 ===========================================================================**/
20 #include <QMessageBox>
21 #include <QInputDialog>
23 #include "QTreePushButton.h"
28 #include "vvMainWindow.h"
29 #include "vvHelpDialog.h"
30 #include "vvRegisterForm.h"
31 #include "vvDocumentation.h"
32 #include "vvProgressDialog.h"
33 #include "vvQDicomSeriesSelector.h"
34 #include "vvSlicerManager.h"
35 #include "clitkImageCommon.h"
37 #include "vvInteractorStyleNavigator.h"
38 #include "vvImageWriter.h"
39 #include "vvSegmentationDialog.h"
40 #include "vvSurfaceViewerDialog.h"
41 #include "vvDeformationDialog.h"
42 #include "vvImageWarp.h"
44 #include "vvMidPosition.h"
46 #include "vvStructSelector.h"
47 #include "vvMeshReader.h"
48 #include "clitkConfiguration.h"
52 #include <itkImageFileReader.h>
53 #include <itkByteSwapper.h>
54 #include <itkCommand.h>
55 #include <itkNumericSeriesFileNames.h>
58 #include <vtkImageData.h>
59 #include <vtkImageActor.h>
60 #include <vtkCornerAnnotation.h>
61 #include <vtkRenderWindow.h>
62 #include <vtkRenderWindowInteractor.h>
63 #include <vtkRenderer.h>
64 #include <vtkRendererCollection.h>
65 #include <vtkWindowToImageFilter.h>
66 #include <vtkBMPWriter.h>
67 #include <vtkTIFFWriter.h>
68 #include <vtkPNMWriter.h>
69 #include <vtkPNGWriter.h>
70 #include <vtkJPEGWriter.h>
71 #include <vtkFFMPEGWriter.h>
72 #ifdef VTK_USE_MPEG2_ENCODER
73 # include <vtkMPEG2Writer.h>
75 #include <vtkMatrix4x4.h>
76 #include <vtkTransform.h>
84 #define COLUMN_UL_VIEW 1
85 #define COLUMN_UR_VIEW 2
86 #define COLUMN_DL_VIEW 3
87 #define COLUMN_DR_VIEW 4
88 #define COLUMN_CLOSE_IMAGE 5
89 #define COLUMN_RELOAD_IMAGE 6
90 #define COLUMN_IMAGE_NAME 7
92 #define EXTENSIONS "Images ( *.bmp *.png *.jpeg *.jpg *.tif *.mhd *.mha *.hdr *.vox *.his *.xdr *.SCAN )"
95 0,Qt::UserRole full filename
96 1,Qt::CheckStateRole checkbutton UL View
97 1,Qt::UserRole overlay, fusion or vector
98 2,Qt::CheckStateRole checkbutton UR View
99 3,Qt::CheckStateRole checkbutton DL View
100 4,Qt::CheckStateRole checkbutton DR View
102 5,Qt::UserRole mSlicerManager id*/
104 //------------------------------------------------------------------------------
105 vvMainWindow::vvMainWindow():vvMainWindowBase()
107 setupUi(this); // this sets up the GUI
110 mMenuTools = menuTools;
111 // mMenuSegmentation = menuSegmentation;
112 mContextMenu = &contextMenu;
113 mMenuExperimentalTools = menuExperimental;
116 mCurrentSelectedImageId = "";
117 mCurrentPickedImageId = "";
118 mCurrentPickedImageIndex = 0;
120 //Init the contextMenu
121 this->setContextMenuPolicy(Qt::CustomContextMenu);
122 contextActions.resize(0);
123 QAction* actionOpen_new_image = contextMenu.addAction(QIcon(QString::fromUtf8(":/common/icons/fileopen.png")),
124 tr("O&pen new Image"));
125 actionOpen_new_image->setShortcut(QKeySequence(tr("Ctrl+O")));
126 connect(actionOpen_new_image,SIGNAL(triggered()),this,SLOT(OpenImages()));
127 contextActions.push_back(actionOpen_new_image);
128 contextMenu.addSeparator();
130 QAction* actionClose_Image = contextMenu.addAction(QIcon(QString::fromUtf8(":/common/icons/exit.png")),
131 tr("Close Current Image"));
132 connect(actionClose_Image,SIGNAL(triggered()),this,SLOT(CloseImage()));
133 contextActions.push_back(actionClose_Image);
135 QAction* actionReload_image = contextMenu.addAction(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")),
136 tr("Reload Current Image"));
137 connect(actionReload_image,SIGNAL(triggered()),this,SLOT(ReloadImage()));
138 contextActions.push_back(actionReload_image);
140 QAction* actionSave_image = contextMenu.addAction(QIcon(QString::fromUtf8(":/common/icons/filesave.png")),
141 tr("Save Current Image"));
142 connect(actionSave_image,SIGNAL(triggered()),this,SLOT(SaveAs()));
143 contextActions.push_back(actionSave_image);
145 contextMenu.addSeparator();
147 contextMenu.addAction(actionAdd_VF_to_current_Image);
148 contextActions.push_back(actionAdd_VF_to_current_Image);
150 QAction* actionAdd_Overlay_to_current_Image = menuOverlay->addAction(QIcon(QString::fromUtf8(":/common/icons/GPSup.png")),
151 tr("Add overlay image to current image"));
152 contextMenu.addAction(actionAdd_Overlay_to_current_Image);
153 contextActions.push_back(actionAdd_Overlay_to_current_Image);
155 connect(actionAdd_Overlay_to_current_Image,SIGNAL(triggered()), this,SLOT(SelectOverlayImage()));
157 contextMenu.addAction(actionAdd_fusion_image);
158 connect(actionAdd_fusion_image,SIGNAL(triggered()),this,SLOT(SelectFusionImage()));
159 contextActions.push_back(actionAdd_fusion_image);
163 QMenu * m = new QMenu(menubar);
165 // m->setObjectName(QString::fromUtf8("TOTOTO"));
166 contextMenu.addMenu(m);
167 QAction * a = m->addAction(QIcon(QString::fromUtf8(":/common/icons/GPSup.png")),
169 QAction * b = m->addAction(QIcon(QString::fromUtf8(":/common/icons/GPSup.png")),
173 connect(a,SIGNAL(triggered()),this,SLOT(AddFusionImage()));
177 mSlicerManagers.resize(0);
187 header.append("Name");
189 DataTree->setHeaderLabels(header);
190 DataTree->resizeColumnToContents(COLUMN_TREE);
191 DataTree->resizeColumnToContents(COLUMN_UL_VIEW);
192 DataTree->resizeColumnToContents(COLUMN_UR_VIEW);
193 DataTree->resizeColumnToContents(COLUMN_DL_VIEW);
194 DataTree->resizeColumnToContents(COLUMN_DR_VIEW);
195 DataTree->resizeColumnToContents(COLUMN_CLOSE_IMAGE);
196 DataTree->resizeColumnToContents(COLUMN_RELOAD_IMAGE);
197 DataTree->resizeColumnToContents(COLUMN_IMAGE_NAME);
200 documentation = new vvDocumentation();
201 help_dialog = new vvHelpDialog();
202 dicomSeriesSelector = new vvDicomSeriesSelector();
204 inverseButton->setEnabled(0);
205 actionAdd_Overlay_to_current_Image->setEnabled(0);
206 actionSave_As->setEnabled(0);
207 actionAdd_VF_to_current_Image->setEnabled(0);
208 actionAdd_fusion_image->setEnabled(0);
211 verticalSliders.push_back(NOVerticalSlider);
212 verticalSliders.push_back(NEVerticalSlider);
213 verticalSliders.push_back(SOVerticalSlider);
214 verticalSliders.push_back(SEVerticalSlider);
216 for (int i =0; i < 4; i++)
217 verticalSliders[i]->hide();
219 horizontalSliders.push_back(NOHorizontalSlider);
220 horizontalSliders.push_back(NEHorizontalSlider);
221 horizontalSliders.push_back(SOHorizontalSlider);
222 horizontalSliders.push_back(SEHorizontalSlider);
224 for (int i =0; i < 4; i++)
225 horizontalSliders[i]->hide();
228 connect(NOVerticalSlider,SIGNAL(valueChanged(int)),this,SLOT(NOVerticalSliderChanged()));
229 connect(NEVerticalSlider,SIGNAL(valueChanged(int)),this,SLOT(NEVerticalSliderChanged()));
230 connect(SOVerticalSlider,SIGNAL(valueChanged(int)),this,SLOT(SOVerticalSliderChanged()));
231 connect(SEVerticalSlider,SIGNAL(valueChanged(int)),this,SLOT(SEVerticalSliderChanged()));
233 connect(NOHorizontalSlider,SIGNAL(valueChanged(int)),this,SLOT(NOHorizontalSliderMoved()));
234 connect(NEHorizontalSlider,SIGNAL(valueChanged(int)),this,SLOT(NEHorizontalSliderMoved()));
235 connect(SOHorizontalSlider,SIGNAL(valueChanged(int)),this,SLOT(SOHorizontalSliderMoved()));
236 connect(SEHorizontalSlider,SIGNAL(valueChanged(int)),this,SLOT(SEHorizontalSliderMoved()));
239 connect(actionCompute_mid_position_image,SIGNAL(triggered()),this,SLOT(ComputeMidPosition()));
240 connect(actionDeformable_Registration,SIGNAL(triggered()),this,SLOT(ComputeDeformableRegistration()));
241 connect(actionWarp_image_with_vector_field,SIGNAL(triggered()),this,SLOT(WarpImage()));
242 connect(actionLoad_images,SIGNAL(triggered()),this,SLOT(OpenImages()));
243 connect(actionOpen_Dicom,SIGNAL(triggered()),this,SLOT(OpenDicom()));
244 connect(actionOpen_Dicom_Struct,SIGNAL(triggered()),this,SLOT(OpenDCStructContour()));
245 connect(actionOpen_VTK_contour,SIGNAL(triggered()),this,SLOT(OpenVTKContour()));
246 connect(actionOpen_Multiple_Images_As_One,SIGNAL(triggered()),this,SLOT(MergeImages()));
247 connect(actionSlice_Image_As_Multiple_Images,SIGNAL(triggered()),this,SLOT(SliceImages()));
248 connect(actionOpen_Image_With_Time,SIGNAL(triggered()),this,SLOT(OpenImageWithTime()));
249 connect(actionMerge_images_as_n_dim_t, SIGNAL(triggered()), this, SLOT(MergeImagesWithTime()));
250 connect(actionSave_As,SIGNAL(triggered()),this,SLOT(SaveAs()));
251 connect(actionExit,SIGNAL(triggered()),this,SLOT(close()));
252 connect(actionAdd_VF_to_current_Image,SIGNAL(triggered()),this,SLOT(OpenField()));
253 connect(actionNavigation_Help,SIGNAL(triggered()),this,SLOT(ShowHelpDialog()));
254 connect(actionDocumentation,SIGNAL(triggered()),this,SLOT(ShowDocumentation()));
255 connect(actionRegister_vv,SIGNAL(triggered()),this,SLOT(PopupRegisterForm()));
257 ///////////////////////////////////////////////
258 connect(actionSegmentation,SIGNAL(triggered()),this,SLOT(SegmentationOnCurrentImage()));
259 connect(actionSurface_Viewer,SIGNAL(triggered()),this,SLOT(SurfaceViewerLaunch()));
260 ///////////////////////////////////////////////
262 actionNorth_East_Window->setEnabled(0);
263 actionNorth_West_Window->setEnabled(0);
264 actionSouth_East_Window->setEnabled(0);
265 actionSouth_West_Window->setEnabled(0);
267 connect(actionNorth_East_Window,SIGNAL(triggered()),this,SLOT(SaveNEScreenshot()));
268 connect(actionNorth_West_Window,SIGNAL(triggered()),this,SLOT(SaveNOScreenshot()));
269 connect(actionSouth_East_Window,SIGNAL(triggered()),this,SLOT(SaveSEScreenshot()));
270 connect(actionSouth_West_Window,SIGNAL(triggered()),this,SLOT(SaveSOScreenshot()));
272 connect(DataTree,SIGNAL(itemSelectionChanged()),this,SLOT(ImageInfoChanged()));
273 connect(DataTree,SIGNAL(itemClicked(QTreeWidgetItem*, int)),this,
274 SLOT(DisplayChanged(QTreeWidgetItem*, int)));
276 connect(viewButton,SIGNAL(clicked()),this, SLOT(ChangeViewMode()) );
277 connect(windowSpinBox,SIGNAL(editingFinished()),this,SLOT(WindowLevelEdited()));
278 connect(levelSpinBox,SIGNAL(editingFinished()),this,SLOT(WindowLevelEdited()));
279 connect(colorMapComboBox,SIGNAL(currentIndexChanged(int)),this,SLOT(UpdateColorMap()));
280 connect(presetComboBox,SIGNAL(currentIndexChanged(int)),this,SLOT(UpdateWindowLevel()));
281 connect(inverseButton,SIGNAL(clicked()),this,SLOT(SwitchWindowLevel()));
282 connect(applyWindowLevelToAllButton,SIGNAL(clicked()),this,SLOT(ApplyWindowLevelToAllImages()));
285 connect(this,SIGNAL(customContextMenuRequested(QPoint)),this,SLOT(ShowContextMenu(QPoint)));
287 connect(linkPanel,SIGNAL(addLink(QString,QString)),this,SLOT(AddLink(QString,QString)));
288 connect(linkPanel,SIGNAL(removeLink(QString,QString)),this,SLOT(RemoveLink(QString,QString)));
289 connect(overlayPanel,SIGNAL(VFPropertyUpdated(int,int,int,int,double,double,double)),this,SLOT(SetVFProperty(int,int,int,int,double,double,double)));
290 connect(overlayPanel,SIGNAL(OverlayPropertyUpdated(int)),this,SLOT(SetOverlayProperty(int)));
291 connect(overlayPanel,SIGNAL(FusionPropertyUpdated(int,int,double,double)),
292 this,SLOT(SetFusionProperty(int,int,double,double)));
293 connect(landmarksPanel,SIGNAL(UpdateRenderWindows()),this,SLOT(UpdateRenderWindows()));
297 playButton->setEnabled(0);
298 frameRateLabel->setEnabled(0);
299 frameRateSpinBox->setEnabled(0);
300 connect(playButton, SIGNAL(clicked()),this,SLOT(PlayPause()));
301 connect(frameRateSpinBox, SIGNAL(valueChanged(int)),this,SLOT(ChangeFrameRate(int)));
303 goToCursorPushButton->setEnabled(0);
304 connect(goToCursorPushButton, SIGNAL(clicked()),this,SLOT(GoToCursor()));
306 NOViewWidget->hide();
307 NEViewWidget->hide();
308 SOViewWidget->hide();
309 SEViewWidget->hide();
311 //Recently opened files
312 std::list<std::string> recent_files = GetRecentlyOpenedImages();
313 recentlyOpenedFilesMenu=NULL;
314 if ( !recent_files.empty() ) {
315 createRecentlyOpenedFilesMenu();
316 updateRecentlyOpenedFilesMenu(recent_files);
319 // Adding all new tools (insertion in the menu)
320 vvToolManager::GetInstance()->InsertToolsInMenu(this);
321 vvToolManager::GetInstance()->EnableToolsInMenu(this, false);
323 if (!CLITK_EXPERIMENTAL)
324 menuExperimental->menuAction()->setVisible(false);
327 QTimer * timerMemory = new QTimer(this);
328 //timerMemory->setInterval(5);
329 connect(timerMemory, SIGNAL(timeout()), this, SLOT(UpdateMemoryUsage()));
330 timerMemory->start(2000);
332 //------------------------------------------------------------------------------
333 void vvMainWindow::show()
335 vvMainWindowBase::show();
336 PopupRegisterForm(true);
338 //------------------------------------------------------------------------------
339 void vvMainWindow::UpdateMemoryUsage()
341 // clitk::PrintMemory(true);
342 if (clitk::GetMemoryUsageInMb() == 0) infoPanel->setMemoryInMb("NA");
343 else infoPanel->setMemoryInMb(QString::number(clitk::GetMemoryUsageInMb())+" MiB");
345 //------------------------------------------------------------------------------
348 //------------------------------------------------------------------------------
349 void vvMainWindow::createRecentlyOpenedFilesMenu()
351 recentlyOpenedFilesMenu = new QMenu("Recently opened files...");
352 recentlyOpenedFilesMenu->setIcon(QIcon(QString::fromUtf8(":/common/icons/open.png")));
353 menuFile->insertMenu(actionOpen_Image_With_Time,recentlyOpenedFilesMenu);
354 menuFile->insertSeparator(actionOpen_Image_With_Time);
356 //------------------------------------------------------------------------------
359 //------------------------------------------------------------------------------
361 void vvMainWindow::updateRecentlyOpenedFilesMenu(const std::list<std::string> &recent_files)
363 if(recentlyOpenedFilesMenu==NULL) {
364 createRecentlyOpenedFilesMenu();
366 recentlyOpenedFilesMenu->clear();
368 for (std::list<std::string>::const_iterator i = recent_files.begin(); i!=recent_files.end(); i++) {
369 QAction* current=new QAction(QIcon(QString::fromUtf8(":/common/icons/open.png")), i->c_str(),this);
370 recentlyOpenedFilesMenu->addAction(current);
371 connect(current,SIGNAL(triggered()),this,SLOT(OpenRecentImage()));
374 //------------------------------------------------------------------------------
377 //------------------------------------------------------------------------------
378 void vvMainWindow::ComputeMidPosition()
381 int index=GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
382 int ref = QInputDialog::getInteger(this,"Chose reference phase","Reference phase",0,0,\
383 mSlicerManagers[index]->GetImage()->GetVTKImages().size()-1,1,&ok);
386 midp.slicer_manager = mSlicerManagers[index];
387 midp.reference_image_index = ref;
388 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
391 QMessageBox::warning(this, "Error computing midposition image",midp.error_message.c_str());
393 QFileInfo info(midp.slicer_manager->GetFileName().c_str());
394 AddImage(midp.output,info.path().toStdString()+"/"+info.completeBaseName().toStdString()+"_midposition.mhd");
396 QApplication::restoreOverrideCursor();
399 //------------------------------------------------------------------------------
402 //------------------------------------------------------------------------------
403 void vvMainWindow::AddContour(int image_index, vvMesh::Pointer contour, bool propagation)
405 QTreeWidgetItem *item = new QTreeWidgetItem();
406 item->setData(0,Qt::UserRole,"filename.vtk");
407 item->setData(1,Qt::UserRole,tr("contour"));
409 brush.setColor(QColor(contour->r*255,contour->g*255,contour->b*255));
410 brush.setStyle(Qt::SolidPattern);
411 item->setData(COLUMN_IMAGE_NAME,Qt::BackgroundRole,brush);
412 item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,contour->structure_name.c_str());
414 for (int j = 1; j <= 4; j++)
415 item->setData(j,Qt::CheckStateRole,DataTree->topLevelItem(image_index)->data(j,Qt::CheckStateRole));
417 QTreePushButton* cButton = new QTreePushButton;
418 cButton->setItem(item);
419 cButton->setColumn(COLUMN_CLOSE_IMAGE);
420 cButton->setToolTip(tr("close image"));
421 cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
422 connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
423 this,SLOT(CloseImage(QTreeWidgetItem*, int)));
425 QTreePushButton* rButton = new QTreePushButton;
426 rButton->setItem(item);
427 rButton->setColumn(COLUMN_RELOAD_IMAGE);
428 rButton->setToolTip(tr("reload image"));
429 rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
430 rButton->setEnabled(false);
432 //connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
433 //this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
435 DataTree->topLevelItem(image_index)->setExpanded(1);
436 DataTree->topLevelItem(image_index)->addChild(item);
437 DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
438 DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
439 QString id = DataTree->topLevelItem(image_index)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString();
440 item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
443 mSlicerManagers[image_index]->AddContour(contour,propagation);
444 mSlicerManagers[image_index]->Render();
446 //------------------------------------------------------------------------------
449 //------------------------------------------------------------------------------
450 void vvMainWindow::OpenVTKContour()
452 if (mSlicerManagers.size() > 0) {
453 QString Extensions = "Images ( *.vtk *.obj)";
454 Extensions += ";;All Files (*)";
455 QString file = QFileDialog::getOpenFileName(this,tr("Open vtkPolyData"),mInputPathName,Extensions);
458 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
459 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
461 reader.SetImage(mSlicerManagers[index]->GetImage());
462 reader.SetModeToVTK();
463 reader.SetFilename(file.toStdString());
465 AddContour(index,reader.GetOutput()[0],false);
466 QApplication::restoreOverrideCursor();
469 //------------------------------------------------------------------------------
472 //------------------------------------------------------------------------------
473 void vvMainWindow::OpenDCStructContour()
475 if (mSlicerManagers.size() > 0) {
476 QString Extensions = "Dicom Files ( *.dcm RS*)";
477 Extensions += ";;All Files (*)";
478 QString file = QFileDialog::getOpenFileName(this,tr("Merge Images"),mInputPathName,Extensions);
481 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
483 reader.SetFilename(file.toStdString());
484 vvStructSelector selector;
485 selector.SetStructures(reader.GetROINames());
486 if (!mSlicerManagers[index]->GetVF().IsNull())
487 selector.EnablePropagationCheckBox();
488 if (selector.exec()) {
489 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
490 reader.SetSelectedItems(selector.getSelectedItems());
491 reader.SetImage(mSlicerManagers[index]->GetImage());
492 if (selector.PropagationEnabled())
493 reader.SetPropagationVF(mSlicerManagers[index]->GetVF());
495 std::vector<vvMesh::Pointer> contours=reader.GetOutput();
496 for (std::vector<vvMesh::Pointer>::iterator i=contours.begin();
497 i!=contours.end(); i++)
498 AddContour(index,*i,selector.PropagationEnabled());
499 QApplication::restoreOverrideCursor();
503 //------------------------------------------------------------------------------
506 //------------------------------------------------------------------------------
507 void vvMainWindow::ComputeDeformableRegistration()
509 if (mSlicerManagers.size() > 0) {
510 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
511 vvDeformationDialog dialog(index,mSlicerManagers);
513 std::string base_name=itksys::SystemTools::GetFilenameWithoutExtension(mSlicerManagers[dialog.GetInputFileIndex()]->GetFileName());
514 AddField(dialog.GetOutput(),dialog.getFieldFile(),dialog.GetInputFileIndex());
515 WarpImage(dialog.GetSelectedSlicer(),dialog.GetReferenceFrameIndex());
517 std::cout << "Error or user cancellation while computing deformation field..." << std::endl;
518 } else QMessageBox::information(this, "Need to open image","You must open an image first.");
520 //------------------------------------------------------------------------------
523 //------------------------------------------------------------------------------
524 void vvMainWindow::WarpImage()
526 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
527 if (!mSlicerManagers[index]->GetVF().IsNull()) {
529 int ref = QInputDialog::getInteger(this,"Chose reference phase","Reference phase",0,0,\
530 mSlicerManagers[index]->GetImage()->GetVTKImages().size()-1,1,&ok);
532 WarpImage(mSlicerManagers[index],ref);
535 QMessageBox::warning(this,tr("No vector field"),tr("Sorry, can't warp without a vector field"));
537 //------------------------------------------------------------------------------
540 //------------------------------------------------------------------------------
541 void vvMainWindow::WarpImage(vvSlicerManager* selected_slicer,int reference_phase)
543 if (!selected_slicer->GetVF().IsNull()) {
544 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
545 QFileInfo info(selected_slicer->GetFileName().c_str());
546 vvImageWarp warp(selected_slicer->GetImage(),selected_slicer->GetVF(),
547 reference_phase,this);
548 if (warp.ComputeWarpedImage()) {
549 AddImage(warp.GetWarpedImage(),info.path().toStdString()+"/"+info.completeBaseName().toStdString()+"_warped.mhd");
550 AddImage(warp.GetDiffImage() ,info.path().toStdString()+"/"+info.completeBaseName().toStdString()+"_diff.mhd");
551 AddImage(warp.GetJacobianImage() ,info.path().toStdString()+"/"+info.completeBaseName().toStdString()+"_jacobian.mhd");
552 QApplication::restoreOverrideCursor();
554 QApplication::restoreOverrideCursor();
555 QMessageBox::warning(this,tr("Different spacings"),tr("The vector field and image spacings must be the same in order to warp."));
558 QMessageBox::warning(this,tr("No vector field"),tr("Sorry, can't warp without a vector field."));
560 //------------------------------------------------------------------------------
563 //------------------------------------------------------------------------------
564 vvMainWindow::~vvMainWindow()
566 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
567 if (mSlicerManagers[i] != NULL)
568 delete mSlicerManagers[i];
571 //------------------------------------------------------------------------------
573 //------------------------------------------------------------------------------
574 QTabWidget * vvMainWindow::GetTab()
578 //------------------------------------------------------------------------------
581 //------------------------------------------------------------------------------
582 void vvMainWindow::MergeImages()
584 QString Extensions = EXTENSIONS;
585 Extensions += ";;All Files (*)";
586 QStringList files = QFileDialog::getOpenFileNames(this,tr("Merge Images"),mInputPathName,Extensions);
589 mInputPathName = itksys::SystemTools::GetFilenamePath(files[0].toStdString()).c_str();
590 std::vector<std::string> vector;
592 unsigned int currentDim = 0;
593 std::vector<double> currentSpacing;
594 std::vector<int> currentSize;
595 std::vector<double> currentOrigin;
597 for (int i = 0; i < files.size(); i++) {
598 itk::ImageIOBase::Pointer reader = itk::ImageIOFactory::CreateImageIO(
599 files[i].toStdString().c_str(), itk::ImageIOFactory::ReadMode);
600 reader->SetFileName(files[i].toStdString().c_str());
601 reader->ReadImageInformation();
603 //NOViewWidget->hide();
604 //NEViewWidget->hide();
605 //SOViewWidget->hide();
606 //SEViewWidget->hide();
608 currentDim = reader->GetNumberOfDimensions();
610 for (unsigned int j = 0; j < currentDim; j++) {
613 currentSpacing.resize(currentDim);
614 currentSize.resize(currentDim);
615 currentOrigin.resize(currentDim);
617 currentOrigin[j] = reader->GetOrigin(j);
618 currentSpacing[j] = reader->GetSpacing(j);
619 currentSize[j] = reader->GetDimensions(j);
620 } else if (currentDim != reader->GetNumberOfDimensions()
621 || currentSpacing[j] != reader->GetSpacing(j)
622 || currentSize[j] != (int)reader->GetDimensions(j)
623 || currentOrigin[j] != reader->GetOrigin(j)) {
624 QString error = "Cannot read file (too different from others ";
625 error += files[i].toStdString().c_str();
626 QMessageBox::information(this,tr("Reading problem"),error);
632 vector.push_back(files[i].toStdString());
635 if (vector.size() > 0)
636 LoadImages(vector, vvImageReader::MERGED);
638 //------------------------------------------------------------------------------
640 //------------------------------------------------------------------------------
641 void vvMainWindow::SliceImages()
643 QString Extensions = EXTENSIONS;
644 Extensions += ";;All Files (*)";
646 QStringList files = QFileDialog::getOpenFileNames(this,tr("Slice Images"),mInputPathName,Extensions);
649 mInputPathName = itksys::SystemTools::GetFilenamePath(files[0].toStdString()).c_str();
650 std::vector<std::string> vector;
651 for (int i = 0; i < files.size(); i++)
652 vector.push_back(files[i].toStdString());
653 LoadImages(vector, vvImageReader::SLICED);
655 //------------------------------------------------------------------------------
657 //------------------------------------------------------------------------------
658 void vvMainWindow::MergeImagesWithTime()
660 QString Extensions = EXTENSIONS;
661 Extensions += ";;All Files (*)";
662 QStringList files = QFileDialog::getOpenFileNames(this,tr("Merge Images With Time"),mInputPathName,Extensions);
665 mInputPathName = itksys::SystemTools::GetFilenamePath(files[0].toStdString()).c_str();
666 std::vector<std::string> vector;
668 unsigned int currentDim = 0;
669 std::vector<double> currentSpacing;
670 std::vector<int> currentSize;
671 std::vector<double> currentOrigin;
673 for (int i = 0; i < files.size(); i++) {
674 itk::ImageIOBase::Pointer reader = itk::ImageIOFactory::CreateImageIO(
675 files[i].toStdString().c_str(), itk::ImageIOFactory::ReadMode);
677 reader->SetFileName(files[i].toStdString().c_str());
678 reader->ReadImageInformation();
680 currentDim = reader->GetNumberOfDimensions();
682 for (unsigned int j = 0; j < currentDim; j++) {
685 currentSpacing.resize(currentDim);
686 currentSize.resize(currentDim);
687 currentOrigin.resize(currentDim);
689 currentOrigin[j] = reader->GetOrigin(j);
690 currentSpacing[j] = reader->GetSpacing(j);
691 currentSize[j] = reader->GetDimensions(j);
692 } else if (currentDim != reader->GetNumberOfDimensions()
693 || currentSpacing[j] != reader->GetSpacing(j)
694 || currentSize[j] != (int)reader->GetDimensions(j)
695 || currentOrigin[j] != reader->GetOrigin(j)) {
696 QString error = "Cannot read file (too different from others ";
697 error += files[i].toStdString().c_str();
698 QMessageBox::information(this,tr("Reading problem"),error);
704 vector.push_back(files[i].toStdString());
706 QString error = "Cannot read file info for ";
707 error += files[i].toStdString().c_str();
709 error += "Maybe you're trying to open an image in an unsupported format?\n";
710 QMessageBox::information(this,tr("Reading problem"),error);
713 sort(vector.begin(),vector.end());
714 if (vector.size() > 1)
715 LoadImages(vector, vvImageReader::MERGEDWITHTIME);
717 QMessageBox::warning(this,tr("Reading problem"),"You need to select at least two images to merge images with time.\nIf you only want to open one image, please use the \"Open Image\" function.");
719 //------------------------------------------------------------------------------
722 //------------------------------------------------------------------------------
723 void vvMainWindow::OpenDicom()
725 std::vector<std::string> files;
727 std::cout << "dicomSeriesSelector " << std::endl;
728 if (dicomSeriesSelector->exec() == QDialog::Accepted) {
729 files = *(dicomSeriesSelector->GetFilenames());
730 LoadImages(files, vvImageReader::DICOM);
733 //------------------------------------------------------------------------------
735 //------------------------------------------------------------------------------
736 void vvMainWindow::OpenImages()
738 QString Extensions = EXTENSIONS;
739 Extensions += ";;All Files (*)";
741 QStringList files = QFileDialog::getOpenFileNames(this,tr("Load Images"),mInputPathName,Extensions);
744 mInputPathName = itksys::SystemTools::GetFilenamePath(files[0].toStdString()).c_str();
745 std::vector<std::string> vector;
746 for (int i = 0; i < files.size(); i++)
747 vector.push_back(files[i].toStdString());
748 LoadImages(vector, vvImageReader::IMAGE);
750 //------------------------------------------------------------------------------
751 void vvMainWindow::OpenRecentImage()
753 QAction * caller = qobject_cast<QAction*>(sender());
754 std::vector<std::string> images;
755 images.push_back(caller->text().toStdString());
756 mInputPathName = itksys::SystemTools::GetFilenamePath(images[0]).c_str();
757 LoadImages(images, vvImageReader::IMAGE);
759 //------------------------------------------------------------------------------
762 //------------------------------------------------------------------------------
763 void vvMainWindow::OpenImageWithTime()
765 QString Extensions = EXTENSIONS;
766 Extensions += ";;All Files (*)";
768 QStringList files = QFileDialog::getOpenFileNames(this,tr("Load Images With Time"),mInputPathName,Extensions);
771 mInputPathName = itksys::SystemTools::GetFilenamePath(files[0].toStdString()).c_str();
772 std::vector<std::string> vector;
773 for (int i = 0; i < files.size(); i++) {
774 vector.push_back(files[i].toStdString());
776 LoadImages(vector, vvImageReader::IMAGEWITHTIME);
778 //------------------------------------------------------------------------------
781 //------------------------------------------------------------------------------
782 void vvMainWindow::LoadImages(std::vector<std::string> files, vvImageReader::LoadedImageType filetype)
784 //Separate the way to open images and dicoms
786 if (filetype == vvImageReader::IMAGE || filetype == vvImageReader::IMAGEWITHTIME)
787 fileSize = files.size();
791 // For SLICED, we need the number of slices (ndim and #slices)
792 std::vector<unsigned int> nSlices;
793 nSlices.resize(files.size());
794 std::fill(nSlices.begin(), nSlices.end(), 1);
795 if (filetype == vvImageReader::SLICED) {
796 for (int i = 0; i < fileSize; i++) {
797 itk::ImageIOBase::Pointer header = clitk::readImageHeader(files[i]);
798 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
801 QString error = "Cannot open file \n";
802 error += files[i].c_str();
803 QMessageBox::information(this,tr("Reading problem"),error);
806 if (header->GetNumberOfDimensions() < 3) {
808 QString error = "Dimension problem. Cannot slice \n";
809 error += files[i].c_str();
810 QMessageBox::information(this,tr("Reading problem"),error);
813 nSlices[i] = header->GetDimensions( header->GetNumberOfDimensions()-1 );
817 //Only add to the list of recently opened files when a single file is opened,
818 //to avoid polluting the list of recently opened files
819 if (files.size() == 1) {
820 QFileInfo finfo=tr(files[0].c_str());
821 AddToRecentlyOpenedImages(finfo.absoluteFilePath().toStdString());
822 updateRecentlyOpenedFilesMenu(GetRecentlyOpenedImages());
824 //init the progress events
825 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
826 vvProgressDialog progress("Opening " + files[0],fileSize>1);
827 qApp->processEvents();
829 int numberofsuccesulreads=0;
830 //open images as 1 or multiples
831 for (int i = 0; i < fileSize; i++) {
833 progress.SetText("Opening " + files[i]);
834 progress.SetProgress(i,fileSize);
835 qApp->processEvents();
837 for (unsigned int j = 0; j < nSlices[i]; j++) {
838 //read the image and put it in mSlicerManagers
839 vvSlicerManager* imageManager = new vvSlicerManager(4);
840 qApp->processEvents();
842 bool SetImageSucceed=false;
844 // Change filename if an image with the same already exist
845 int number = GetImageDuplicateFilenameNumber(files[i] + std::string("_slice"));
847 if (filetype == vvImageReader::IMAGE || filetype == vvImageReader::IMAGEWITHTIME || filetype == vvImageReader::SLICED)
848 SetImageSucceed = imageManager->SetImage(files[i],filetype, number, j);
850 SetImageSucceed = imageManager->SetImages(files,filetype, number);
852 if (!SetImageSucceed) {
853 QApplication::restoreOverrideCursor();
854 QString error = "Cannot open file \n";
855 error += imageManager->GetLastError().c_str();
856 QMessageBox::information(this,tr("Reading problem"),error);
859 mSlicerManagers.push_back(imageManager);
861 //create an item in the tree with good settings
862 QTreeWidgetItem *item = new QTreeWidgetItem();
863 item->setData(0,Qt::UserRole,files[i].c_str());
864 QFileInfo fileinfo(imageManager->GetFileName().c_str()); //Do not show the path
865 item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,fileinfo.fileName());
866 item->setToolTip(COLUMN_IMAGE_NAME,fileinfo.absoluteFilePath());
867 qApp->processEvents();
869 //Create the buttons for reload and close
870 qApp->processEvents();
871 QTreePushButton* cButton = new QTreePushButton;
872 cButton->setItem(item);
873 cButton->setColumn(COLUMN_CLOSE_IMAGE);
874 cButton->setToolTip(tr("close image"));
875 cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
876 connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
877 this,SLOT(CloseImage(QTreeWidgetItem*, int)));
879 QTreePushButton* rButton = new QTreePushButton;
880 rButton->setItem(item);
881 rButton->setColumn(COLUMN_RELOAD_IMAGE);
882 rButton->setToolTip(tr("reload image"));
883 rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
884 connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
885 this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
887 DataTree->addTopLevelItem(item);
888 DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
889 DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
891 //set the id of the image
892 QString id = files[i].c_str() + QString::number(mSlicerManagers.size()-1);
893 item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
894 mSlicerManagers.back()->SetId(id.toStdString());
896 linkPanel->addImage(imageManager->GetFileName(), id.toStdString());
898 connect(mSlicerManagers.back(), SIGNAL(currentImageChanged(std::string)),
899 this,SLOT(CurrentImageChanged(std::string)));
900 connect(mSlicerManagers.back(), SIGNAL(currentPickedImageChanged(std::string)),
901 this, SLOT(CurrentPickedImageChanged(std::string)));
902 connect(mSlicerManagers.back(), SIGNAL(UpdatePosition(int, double, double, double, double, double, double, double)),
903 this,SLOT(MousePositionChanged(int,double, double, double, double, double, double, double)));
904 connect(mSlicerManagers.back(), SIGNAL(UpdateVector(int, double, double, double, double)),
905 this, SLOT(VectorChanged(int,double,double,double, double)));
906 connect(mSlicerManagers.back(), SIGNAL(UpdateOverlay(int, double, double)),
907 this, SLOT(OverlayChanged(int,double,double)));
908 connect(mSlicerManagers.back(), SIGNAL(UpdateFusion(int, double)),
909 this, SLOT(FusionChanged(int,double)));
910 connect(mSlicerManagers.back(), SIGNAL(UpdateWindows(int, int, int)),
911 this,SLOT(WindowsChanged(int, int, int)));
912 connect(mSlicerManagers.back(), SIGNAL(WindowLevelChanged(double, double,int, int)),
913 this,SLOT(WindowLevelChanged(double, double, int, int)));
914 connect(mSlicerManagers.back(), SIGNAL(UpdateSlice(int,int)),
915 this,SLOT(UpdateSlice(int,int)));
916 connect(mSlicerManagers.back(), SIGNAL(UpdateTSlice(int, int)),
917 this,SLOT(UpdateTSlice(int, int)));
918 connect(mSlicerManagers.back(), SIGNAL(UpdateSliceRange(int,int,int,int,int)),
919 this,SLOT(UpdateSliceRange(int,int,int,int,int)));
920 connect(mSlicerManagers.back(), SIGNAL(UpdateLinkManager(std::string,int,double,double,double,int)),
921 this,SLOT(UpdateLinkManager(std::string,int,double,double,double,int)));
922 connect(mSlicerManagers.back(), SIGNAL(UpdateLinkedNavigation(std::string,vvSlicerManager*,vvSlicer*)),
923 this,SLOT(UpdateLinkedNavigation(std::string,vvSlicerManager*,vvSlicer*)));
924 connect(mSlicerManagers.back(), SIGNAL(ChangeImageWithIndexOffset(vvSlicerManager*,int,int)),
925 this,SLOT(ChangeImageWithIndexOffset(vvSlicerManager*,int,int)));
926 connect(mSlicerManagers.back(),SIGNAL(LandmarkAdded()),landmarksPanel,SLOT(AddPoint()));
928 numberofsuccesulreads++;
932 if (numberofsuccesulreads) {
933 NOViewWidget->show();
934 NEViewWidget->show();
935 SOViewWidget->show();
936 SEViewWidget->show();
941 // Try to guess default WindowLevel
943 mSlicerManagers.back()->GetImage()->GetFirstVTKImageData()->GetScalarRange(range);
944 if ((range[0] == 0) && (range[1] == 1)) {
945 presetComboBox->setCurrentIndex(5);// binary
950 QApplication::restoreOverrideCursor();
952 //------------------------------------------------------------------------------
954 //------------------------------------------------------------------------------
955 void vvMainWindow::UpdateTree()
957 DataTree->resizeColumnToContents(COLUMN_TREE);
958 DataTree->resizeColumnToContents(COLUMN_UL_VIEW);
959 DataTree->resizeColumnToContents(COLUMN_UR_VIEW);
960 DataTree->resizeColumnToContents(COLUMN_DL_VIEW);
961 DataTree->resizeColumnToContents(COLUMN_DR_VIEW);
962 DataTree->resizeColumnToContents(COLUMN_IMAGE_NAME);
963 DataTree->resizeColumnToContents(COLUMN_CLOSE_IMAGE);
964 DataTree->resizeColumnToContents(COLUMN_RELOAD_IMAGE);
966 //------------------------------------------------------------------------------
968 //------------------------------------------------------------------------------
969 void vvMainWindow::CurrentImageChanged(std::string id)
971 if (id == mCurrentSelectedImageId) return; // Do nothing
973 for (int i = 0; i < DataTree->topLevelItemCount(); i++) {
974 if (DataTree->topLevelItem(i)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString().toStdString() == id) {
977 DataTree->topLevelItem(i)->setSelected(0);
979 for (int child = 0; child < DataTree->topLevelItem(i)->childCount(); child++)
980 DataTree->topLevelItem(i)->child(child)->setSelected(0);
983 DataTree->topLevelItem(selected)->setSelected(1);
984 mCurrentSelectedImageId = id;
985 emit SelectedImageHasChanged(mSlicerManagers[selected]);
987 //------------------------------------------------------------------------------
989 //------------------------------------------------------------------------------
990 void vvMainWindow::CurrentPickedImageChanged(std::string id)
992 if (id == mCurrentPickedImageId) return; // Do nothing
994 for (int i = 0; i < DataTree->topLevelItemCount(); i++) {
995 if (DataTree->topLevelItem(i)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString().toStdString() == id) {
998 DataTree->topLevelItem(i)->setSelected(0);
1000 for (int child = 0; child < DataTree->topLevelItem(i)->childCount(); child++)
1001 DataTree->topLevelItem(i)->child(child)->setSelected(0);
1004 DataTree->topLevelItem(selected)->setSelected(1);
1005 mCurrentPickedImageId = id;
1006 mCurrentPickedImageIndex = selected;
1008 //------------------------------------------------------------------------------
1010 //------------------------------------------------------------------------------
1011 void vvMainWindow::ImageInfoChanged()
1013 contextActions[6]->setEnabled(1);
1014 contextActions[5]->setEnabled(1);
1015 actionSave_As->setEnabled(1);
1016 actionAdd_VF_to_current_Image->setEnabled(1);
1017 actionAdd_fusion_image->setEnabled(1);
1018 actionNorth_East_Window->setEnabled(1);
1019 actionNorth_West_Window->setEnabled(1);
1020 actionSouth_East_Window->setEnabled(1);
1021 actionSouth_West_Window->setEnabled(1);
1022 vvToolManager::GetInstance()->EnableToolsInMenu(this, true);
1023 inverseButton->setEnabled(1);
1025 goToCursorPushButton->setEnabled(1);
1027 if (DataTree->selectedItems().size()) {
1028 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1030 colorMapComboBox->setEnabled(1);
1031 for (int i = 0; i < DataTree->topLevelItem(index)->childCount(); i++) {
1032 if (DataTree->topLevelItem(index)->child(i)->data(1,Qt::UserRole).toString() == "overlay" ||
1033 DataTree->topLevelItem(index)->child(i)->data(1,Qt::UserRole).toString() == "fusion") {
1034 colorMapComboBox->setEnabled(0);
1039 std::vector<double> origin;
1040 std::vector<double> inputSpacing;
1041 std::vector<int> inputSize;
1042 std::vector<double> sizeMM;
1043 vtkSmartPointer<vtkMatrix4x4> transformation;
1046 QString inputSizeInBytes;
1047 QString image = DataTree->selectedItems()[0]->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
1049 if (mSlicerManagers[index]->GetSlicer(0)->GetImage()->GetVTKImages().size() > 1 || playMode == 1) {
1050 playButton->setEnabled(1);
1051 frameRateLabel->setEnabled(1);
1052 frameRateSpinBox->setEnabled(1);
1054 playButton->setEnabled(0);
1055 frameRateLabel->setEnabled(0);
1056 frameRateSpinBox->setEnabled(0);
1062 vvImage::Pointer imageSelected;
1063 if (DataTree->topLevelItem(index) == DataTree->selectedItems()[0]) {
1064 imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetImage();
1065 dimension = imageSelected->GetNumberOfDimensions();
1066 origin.resize(dimension);
1067 inputSpacing.resize(dimension);
1068 inputSize.resize(dimension);
1069 sizeMM.resize(dimension);
1070 pixelType = mSlicerManagers[index]->GetImage()->GetScalarTypeAsITKString().c_str();
1071 for (int i = 0; i < dimension; i++) {
1072 origin[i] = imageSelected->GetOrigin()[i];
1073 inputSpacing[i] = imageSelected->GetSpacing()[i];
1074 inputSize[i] = imageSelected->GetSize()[i];
1075 sizeMM[i] = inputSize[i]*inputSpacing[i];
1076 NPixel *= inputSize[i];
1078 inputSizeInBytes = GetSizeInBytes(imageSelected->GetActualMemorySize()*1000);
1079 } else if (DataTree->selectedItems()[0]->data(1,Qt::UserRole).toString() == "vector") {
1080 imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetVF();
1081 dimension = imageSelected->GetNumberOfDimensions();
1082 origin.resize(dimension);
1083 inputSpacing.resize(dimension);
1084 inputSize.resize(dimension);
1085 sizeMM.resize(dimension);
1086 pixelType = mSlicerManagers[index]->GetVF()->GetScalarTypeAsITKString().c_str();
1087 for (int i = 0; i < dimension; i++) {
1088 origin[i] = imageSelected->GetOrigin()[i];
1089 inputSpacing[i] = imageSelected->GetSpacing()[i];
1090 inputSize[i] = imageSelected->GetSize()[i];
1091 sizeMM[i] = inputSize[i]*inputSpacing[i];
1092 NPixel *= inputSize[i];
1094 inputSizeInBytes = GetSizeInBytes(imageSelected->GetActualMemorySize()*1000);
1095 } else if (DataTree->selectedItems()[0]->data(1,Qt::UserRole).toString() == "overlay") {
1096 imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetOverlay();
1097 dimension = imageSelected->GetNumberOfDimensions();
1098 origin.resize(dimension);
1099 inputSpacing.resize(dimension);
1100 inputSize.resize(dimension);
1101 sizeMM.resize(dimension);
1102 pixelType = mSlicerManagers[index]->GetImage()->GetScalarTypeAsITKString().c_str();
1103 for (int i = 0; i < dimension; i++) {
1104 origin[i] = imageSelected->GetOrigin()[i];
1105 inputSpacing[i] = imageSelected->GetSpacing()[i];
1106 inputSize[i] = imageSelected->GetSize()[i];
1107 sizeMM[i] = inputSize[i]*inputSpacing[i];
1108 NPixel *= inputSize[i];
1110 inputSizeInBytes = GetSizeInBytes(imageSelected->GetActualMemorySize()*1000);
1111 } else if (DataTree->selectedItems()[0]->data(1,Qt::UserRole).toString() == "fusion") {
1112 imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetFusion();
1113 dimension = imageSelected->GetNumberOfDimensions();
1114 origin.resize(dimension);
1115 inputSpacing.resize(dimension);
1116 inputSize.resize(dimension);
1117 sizeMM.resize(dimension);
1118 pixelType = mSlicerManagers[index]->GetImage()->GetScalarTypeAsITKString().c_str();
1119 for (int i = 0; i < dimension; i++) {
1120 origin[i] = imageSelected->GetOrigin()[i];
1121 inputSpacing[i] = imageSelected->GetSpacing()[i];
1122 inputSize[i] = imageSelected->GetSize()[i];
1123 sizeMM[i] = inputSize[i]*inputSpacing[i];
1124 NPixel *= inputSize[i];
1126 inputSizeInBytes = GetSizeInBytes(imageSelected->GetActualMemorySize()*1000);
1129 QString dim = QString::number(dimension) + " (";
1130 dim += pixelType + ")";
1132 infoPanel->setFileName(image);
1133 infoPanel->setDimension(dim);
1134 infoPanel->setSizePixel(GetVectorIntAsString(inputSize));
1135 infoPanel->setSizeMM(GetVectorDoubleAsString(sizeMM));
1136 infoPanel->setOrigin(GetVectorDoubleAsString(origin));
1137 infoPanel->setSpacing(GetVectorDoubleAsString(inputSpacing));
1138 infoPanel->setNPixel(QString::number(NPixel)+" ("+inputSizeInBytes+")");
1139 transformation = imageSelected->GetTransform()->GetMatrix();
1140 infoPanel->setTransformation(Get4x4MatrixDoubleAsString(transformation));
1142 landmarksPanel->SetCurrentLandmarks(mSlicerManagers[index]->GetLandmarks(),
1143 mSlicerManagers[index]->GetSlicer(0)->GetImage()->GetVTKImages().size());
1144 landmarksPanel->SetCurrentPath(mInputPathName.toStdString());
1145 landmarksPanel->SetCurrentImage(mSlicerManagers[index]->GetFileName().c_str());
1147 overlayPanel->getCurrentImageName(mSlicerManagers[index]->GetFileName().c_str());
1148 for (int i = 0; i < 4; i++) {
1149 if (DataTree->selectedItems()[0]->data(i+1,Qt::CheckStateRole).toInt() > 0 || i == 3) {
1150 mSlicerManagers[index]->UpdateInfoOnCursorPosition(i);
1154 windowSpinBox->setValue(mSlicerManagers[index]->GetColorWindow());
1155 levelSpinBox->setValue(mSlicerManagers[index]->GetColorLevel());
1156 presetComboBox->setCurrentIndex(mSlicerManagers[index]->GetPreset());
1157 colorMapComboBox->setCurrentIndex(mSlicerManagers[index]->GetColorMap());
1159 infoPanel->setFileName(image);
1160 infoPanel->setDimension(dim);
1161 infoPanel->setSizePixel(GetVectorIntAsString(inputSize));
1162 infoPanel->setSizeMM(GetVectorDoubleAsString(sizeMM));
1163 infoPanel->setOrigin(GetVectorDoubleAsString(origin));
1164 infoPanel->setSpacing(GetVectorDoubleAsString(inputSpacing));
1165 infoPanel->setNPixel(QString::number(NPixel)+" ("+inputSizeInBytes+")");
1167 landmarksPanel->SetCurrentLandmarks(mSlicerManagers[index]->GetLandmarks(),
1168 mSlicerManagers[index]->GetSlicer(0)->GetImage()->GetVTKImages().size());
1169 landmarksPanel->SetCurrentPath(mInputPathName.toStdString());
1170 landmarksPanel->SetCurrentImage(mSlicerManagers[index]->GetFileName().c_str());
1172 overlayPanel->getCurrentImageName(mSlicerManagers[index]->GetFileName().c_str());
1173 for (int i = 0; i < 4; i++) {
1174 if (DataTree->selectedItems()[0]->data(i+1,Qt::CheckStateRole).toInt() > 0 || i == 3) {
1175 mSlicerManagers[index]->UpdateInfoOnCursorPosition(i);
1179 windowSpinBox->setValue(mSlicerManagers[index]->GetColorWindow());
1180 levelSpinBox->setValue(mSlicerManagers[index]->GetColorLevel());
1181 presetComboBox->setCurrentIndex(mSlicerManagers[index]->GetPreset());
1182 colorMapComboBox->setCurrentIndex(mSlicerManagers[index]->GetColorMap());
1184 if (mSlicerManagers[index]->GetSlicer(0)->GetVF()) {
1185 overlayPanel->getVFName(mSlicerManagers[index]->GetVFName().c_str());
1186 overlayPanel->getVFProperty(mSlicerManagers[index]->GetSlicer(0)->GetVFSubSampling(),
1187 mSlicerManagers[index]->GetSlicer(0)->GetVFScale(),
1188 mSlicerManagers[index]->GetSlicer(0)->GetVFLog());
1190 overlayPanel->getVFName(mSlicerManagers[index]->GetVFName().c_str());
1191 overlayPanel->getVFProperty(-1,-1,-1);
1193 if (mSlicerManagers[index]->GetSlicer(0)->GetOverlay()) {
1194 overlayPanel->getOverlayName(mSlicerManagers[index]->GetOverlayName().c_str());
1195 overlayPanel->getOverlayProperty(mSlicerManagers[index]->GetOverlayColor());
1197 overlayPanel->getOverlayName(mSlicerManagers[index]->GetOverlayName().c_str());
1198 overlayPanel->getOverlayProperty(-1);
1200 if (mSlicerManagers[index]->GetSlicer(0)->GetFusion()) {
1201 overlayPanel->getFusionName(mSlicerManagers[index]->GetFusionName().c_str());
1202 overlayPanel->getFusionProperty(mSlicerManagers[index]->GetFusionOpacity(),
1203 mSlicerManagers[index]->GetFusionColorMap(),
1204 mSlicerManagers[index]->GetFusionWindow(),
1205 mSlicerManagers[index]->GetFusionLevel());
1207 overlayPanel->getFusionName(mSlicerManagers[index]->GetFusionName().c_str());
1208 overlayPanel->getFusionProperty(-1, -1,-1,-1);
1212 //------------------------------------------------------------------------------
1214 //------------------------------------------------------------------------------
1215 void vvMainWindow::ShowDocumentation()
1217 documentation->show();
1219 //------------------------------------------------------------------------------
1221 //------------------------------------------------------------------------------
1222 void vvMainWindow::PopupRegisterForm(bool checkCanPush)
1224 vvRegisterForm* registerForm = new vvRegisterForm(QUrl("http://www.creatis.insa-lyon.fr/~dsarrut/vvregister/write.php"), getVVSettingsPath(), getSettingsOptionFormat());
1226 registerForm->show();
1228 if(registerForm->canPush()) {
1229 registerForm->show();
1230 registerForm->acquitPushed();//too bad if there is not internet connection anymore.
1234 //------------------------------------------------------------------------------
1236 //------------------------------------------------------------------------------
1237 void vvMainWindow::ShowHelpDialog()
1239 help_dialog->show();
1241 //------------------------------------------------------------------------------
1243 //------------------------------------------------------------------------------
1244 void vvMainWindow::ChangeViewMode()
1247 if (viewMode == 1) {
1251 splitter_3->setSizes(size);
1252 OSplitter->setSizes(size);
1253 DataTree->setColumnHidden(2,1);
1254 DataTree->setColumnHidden(3,1);
1255 DataTree->setColumnHidden(4,1);
1260 splitter_3->setSizes(size);
1261 OSplitter->setSizes(size);
1262 DataTree->setColumnHidden(2,0);
1263 DataTree->setColumnHidden(3,0);
1264 DataTree->setColumnHidden(4,0);
1266 UpdateRenderWindows();
1268 ** I don't know why but for both resized QVTKWidget we also need to render
1269 ** the associated Slicer to redraw crosses.
1271 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
1272 if (DataTree->topLevelItem(i)->data(COLUMN_UL_VIEW,Qt::CheckStateRole).toInt() > 1)
1273 mSlicerManagers[i]->GetSlicer(0)->Render();
1274 if (DataTree->topLevelItem(i)->data(COLUMN_DL_VIEW,Qt::CheckStateRole).toInt() > 1)
1275 mSlicerManagers[i]->GetSlicer(2)->Render();
1278 //------------------------------------------------------------------------------
1280 //------------------------------------------------------------------------------
1281 QString vvMainWindow::GetSizeInBytes(unsigned long size)
1283 QString result = "";// QString::number(size);
1284 //result += " bytes (";
1285 if (size > 1000000000) {
1287 result += QString::number(size);
1288 result += "Gb";//)";
1289 } else if (size > 1000000) {
1291 result += QString::number(size);
1292 result += "Mb";//)";
1293 } else if (size > 1000) {
1295 result += QString::number(size);
1296 result += "kb";//)";
1300 //------------------------------------------------------------------------------
1302 //------------------------------------------------------------------------------
1303 QString vvMainWindow::Get4x4MatrixDoubleAsString(vtkSmartPointer<vtkMatrix4x4> matrix)
1305 std::ostringstream strmatrix;
1307 for (unsigned int i = 0; i < 4; i++) {
1308 for (unsigned int j = 0; j < 4; j++) {
1309 strmatrix.flags(ios::showpos);
1310 strmatrix.width(10);
1311 strmatrix.precision(3);
1312 strmatrix.setf(ios::fixed,ios::floatfield);
1313 strmatrix.fill(' ');
1314 strmatrix << std::left << matrix->GetElement(i, j);
1315 //strmatrix.width(10);
1318 strmatrix << std::endl;
1320 QString result = strmatrix.str().c_str();
1323 //------------------------------------------------------------------------------
1325 //------------------------------------------------------------------------------
1326 QString vvMainWindow::GetVectorDoubleAsString(std::vector<double> vectorDouble)
1329 for (unsigned int i= 0; i < vectorDouble.size(); i++) {
1332 result += QString::number(vectorDouble[i]);
1336 //------------------------------------------------------------------------------
1338 //------------------------------------------------------------------------------
1339 QString vvMainWindow::GetVectorIntAsString(std::vector<int> vectorInt)
1342 for (unsigned int i= 0; i < vectorInt.size(); i++) {
1345 result += QString::number(vectorInt[i]);
1349 //------------------------------------------------------------------------------
1351 //------------------------------------------------------------------------------
1352 int vvMainWindow::GetSlicerIndexFromItem(QTreeWidgetItem* item)
1354 QString id = item->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString();
1355 for (int i = 0; i < DataTree->topLevelItemCount(); i++) {
1356 if (DataTree->topLevelItem(i)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString() == id)
1361 //------------------------------------------------------------------------------
1363 //------------------------------------------------------------------------------
1364 QTreeWidgetItem* vvMainWindow::GetItemFromSlicerManager(vvSlicerManager* sm)
1366 QString id = sm->GetId().c_str();
1367 for (int i = 0; i < DataTree->topLevelItemCount(); i++) {
1368 if (DataTree->topLevelItem(i)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString() == id)
1369 return DataTree->topLevelItem(i);
1373 //------------------------------------------------------------------------------
1375 //------------------------------------------------------------------------------
1376 void vvMainWindow::DisplayChanged(QTreeWidgetItem *clicked_item, int column)
1378 int index = GetSlicerIndexFromItem(clicked_item);
1379 if ( column >= COLUMN_CLOSE_IMAGE || column <= 0)
1381 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
1382 //Trick to avoid redoing twice the job for a key (sr)
1383 mSlicerManagers[i]->GetSlicer(column-1)->GetRenderWindow()-> GetInteractor()->SetKeySym("Crap");
1385 QTreeWidgetItem* current_row=DataTree->topLevelItem(i);
1386 if (DataTree->topLevelItem(index) == current_row) {
1387 vvSlicer* clicked_slicer=mSlicerManagers[i]->GetSlicer(column-1);
1388 if (current_row == clicked_item) {
1389 //If we just activated a slicer
1390 if (current_row->data(column,Qt::CheckStateRole).toInt() > 0) {
1391 mSlicerManagers[i]->UpdateSlicer(column-1,clicked_item->data(column,Qt::CheckStateRole).toInt());
1392 mSlicerManagers[i]->UpdateInfoOnCursorPosition(column-1);
1393 DisplaySliders(i,column-1);
1394 std::map<std::string,int> overlay_counts;
1395 for (int child = 0; child < current_row->childCount(); child++) {
1396 std::string overlay_type =
1397 current_row->child(child)->data(1,Qt::UserRole).toString().toStdString();
1398 overlay_counts[overlay_type]++;
1399 current_row->child(child)->setData(column,Qt::CheckStateRole,
1400 current_row->data(column,Qt::CheckStateRole));
1401 clicked_slicer->SetActorVisibility(overlay_type,overlay_counts[overlay_type]-1,true);
1403 } else { //We don't allow simply desactivating a slicer
1404 clicked_item->setData(column,Qt::CheckStateRole,2);
1405 DisplayChanged(clicked_item, column);
1409 //if we clicked on the vector(or overlay) and not the image
1411 if (clicked_item->data(column,Qt::CheckStateRole).toInt()) {
1412 current_row->setData(column,Qt::CheckStateRole,2);
1413 mSlicerManagers[i]->UpdateSlicer(column-1,2);
1414 mSlicerManagers[i]->UpdateInfoOnCursorPosition(column-1);
1415 DisplaySliders(i,column-1);
1417 int vis = clicked_item->data(column,Qt::CheckStateRole).toInt();
1418 std::string overlay_type = clicked_item->data(1,Qt::UserRole).toString().toStdString();
1419 int overlay_index=0;
1420 for (int child = 0; child < current_row->childCount(); child++) {
1421 if (current_row->child(child)->data(1,Qt::UserRole).toString().toStdString() == overlay_type)
1423 if (current_row->child(child) == clicked_item) break;
1425 clicked_slicer->SetActorVisibility(
1426 clicked_item->data(1,Qt::UserRole).toString().toStdString(), overlay_index-1,vis);
1428 } else if (current_row->data(column,Qt::CheckStateRole).toInt() > 0) {
1429 current_row->setData(column,Qt::CheckStateRole,0);
1430 mSlicerManagers[i]->UpdateSlicer(column-1,0);
1431 std::map<std::string,int> overlay_counts;
1432 for (int child = 0; child < current_row->childCount(); child++) {
1433 std::string overlay_type =
1434 current_row->child(child)->data(1,Qt::UserRole).toString().toStdString();
1435 overlay_counts[overlay_type]++;
1436 current_row->child(child)->setData(column,Qt::CheckStateRole,0);
1437 vvSlicer * current_slicer=mSlicerManagers[i]->GetSlicer(column-1);
1438 current_slicer->SetActorVisibility(overlay_type,overlay_counts[overlay_type]-1,false);
1441 //mSlicerManagers[i]->SetColorMap(-1);
1442 mSlicerManagers[i]->SetColorMap();
1444 mSlicerManagers[index]->GetSlicer(column-1)->Render();
1446 //------------------------------------------------------------------------------
1448 void vvMainWindow::InitSlicers()
1450 if (mSlicerManagers.size()) {
1451 mSlicerManagers.back()->GenerateDefaultLookupTable();
1453 mSlicerManagers.back()->SetSlicerWindow(0,NOViewWidget->GetRenderWindow());
1454 mSlicerManagers.back()->SetSlicerWindow(1,NEViewWidget->GetRenderWindow());
1455 mSlicerManagers.back()->SetSlicerWindow(2,SOViewWidget->GetRenderWindow());
1456 mSlicerManagers.back()->SetSlicerWindow(3,SEViewWidget->GetRenderWindow());
1460 //------------------------------------------------------------------------------
1461 void vvMainWindow::InitDisplay()
1463 if (mSlicerManagers.size()) {
1464 //BE CAREFUL : this is absolutely necessary to set the interactor style
1465 //in order to have the same style instanciation for all SlicerManagers in
1467 for (int j = 0; j < 4; j++) {
1468 vvInteractorStyleNavigator* style = vvInteractorStyleNavigator::New();
1469 style->SetAutoAdjustCameraClippingRange(1);
1470 bool AlreadySelected = false;
1471 for (int i = 0; i < DataTree->topLevelItemCount(); i++) {
1472 mSlicerManagers[i]->SetInteractorStyleNavigator(j,style);
1474 //select the image only if previous are not selected
1475 if (DataTree->topLevelItem(i)->data(j+1,Qt::CheckStateRole).toInt() > 1) {
1476 mSlicerManagers[i]->UpdateSlicer(j,1);
1477 AlreadySelected = true;
1478 } else if (i == DataTree->topLevelItemCount()-1 && !AlreadySelected) {
1479 if (DataTree->selectedItems().size() == 0)
1480 DataTree->topLevelItem(i)->setSelected(1);
1481 DataTree->topLevelItem(i)->setData(j+1,Qt::CheckStateRole,2);
1482 mSlicerManagers[i]->UpdateSlicer(j,1);
1483 DisplaySliders(i,j);
1485 DataTree->topLevelItem(i)->setData(j+1,Qt::CheckStateRole,0);
1486 mSlicerManagers[i]->UpdateSlicer(j,0);
1493 //------------------------------------------------------------------------------
1495 //------------------------------------------------------------------------------
1496 void vvMainWindow::DisplaySliders(int slicer, int window)
1499 mSlicerManagers[slicer]->GetSlicer(window)->GetSliceRange(range);
1500 int position = mSlicerManagers[slicer]->GetSlicer(window)->GetSlice();
1504 tRange[1] = mSlicerManagers[slicer]->GetSlicer(window)->GetTMax();
1505 int tPosition = mSlicerManagers[slicer]->GetSlicer(window)->GetTSlice();
1506 bool showHorizontal = false;
1507 bool showVertical = false;
1508 if (mSlicerManagers[slicer]->GetSlicer(window)->GetImage()->GetNumberOfDimensions() > 3
1509 || (mSlicerManagers[slicer]->GetSlicer(window)->GetImage()->GetNumberOfDimensions() > 2
1510 && mSlicerManagers[slicer]->GetType() != vvImageReader::IMAGEWITHTIME
1511 && mSlicerManagers[slicer]->GetType() != vvImageReader::MERGEDWITHTIME))
1512 showVertical = true;
1513 if (mSlicerManagers[slicer]->GetSlicer(window)->GetImage()->GetNumberOfDimensions() > 3
1514 || mSlicerManagers[slicer]->GetType() == vvImageReader::IMAGEWITHTIME
1515 || mSlicerManagers[slicer]->GetType() == vvImageReader::MERGEDWITHTIME)
1516 showHorizontal = true;
1519 verticalSliders[window]->show();
1521 verticalSliders[window]->hide();
1522 verticalSliders[window]->setRange(range[0],range[1]);
1523 verticalSliders[window]->setValue(position);
1526 horizontalSliders[window]->show();
1528 horizontalSliders[window]->hide();
1529 horizontalSliders[window]->setRange(tRange[0],tRange[1]);
1530 horizontalSliders[window]->setValue(tPosition);
1532 //------------------------------------------------------------------------------
1534 //------------------------------------------------------------------------------
1535 void vvMainWindow::CloseImage(QTreeWidgetItem* item, int column)
1537 int index = GetSlicerIndexFromItem(item);
1539 if (DataTree->topLevelItem(index) != item) {
1540 QString warning = "Do you really want to close the overlay : ";
1541 warning += item->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
1542 QMessageBox msgBox(QMessageBox::Warning, tr("Close Overlay"),
1544 msgBox.addButton(tr("Close"), QMessageBox::AcceptRole);
1545 msgBox.addButton(tr("Cancel"), QMessageBox::RejectRole);
1546 if (msgBox.exec() == QMessageBox::AcceptRole) {
1547 std::string overlay_type=item->data(1,Qt::UserRole).toString().toStdString();
1548 int overlay_index=0;
1549 for (int child = 0; child < DataTree->topLevelItem(index)->childCount(); child++) {
1550 if (DataTree->topLevelItem(index)->\
1551 child(child)->data(1,Qt::UserRole).toString().toStdString() == overlay_type)
1553 if (DataTree->topLevelItem(index)->child(child) == item) break;
1555 mSlicerManagers[index]->RemoveActor(overlay_type, overlay_index-1);
1556 mSlicerManagers[index]->SetColorMap(0);
1557 DataTree->topLevelItem(index)->takeChild(DataTree->topLevelItem(index)->indexOfChild(item));
1558 mSlicerManagers[index]->Render();
1560 } else if (DataTree->topLevelItemCount() <= 1) {
1561 QString warning = "Do you really want to close the image : ";
1562 warning += item->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
1563 warning += "\nThis is the last image, you're about to close vv !!!";
1564 QMessageBox msgBox(QMessageBox::Warning, tr("Close Image"),
1566 msgBox.addButton(tr("Close vv"), QMessageBox::AcceptRole);
1567 msgBox.addButton(tr("Cancel"), QMessageBox::RejectRole);
1568 if (msgBox.exec() == QMessageBox::AcceptRole) {
1572 QString warning = "Do you really want to close the image : ";
1573 warning += item->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
1574 QMessageBox msgBox(QMessageBox::Warning, tr("Close Image"),
1576 msgBox.addButton(tr("Close"), QMessageBox::AcceptRole);
1577 msgBox.addButton(tr("Cancel"), QMessageBox::RejectRole);
1578 if (msgBox.exec() == QMessageBox::AcceptRole) {
1580 // Tell tools that we close an image
1581 emit AnImageIsBeingClosed(mSlicerManagers[index]);
1583 std::vector<vvSlicerManager*>::iterator Manageriter = mSlicerManagers.begin();
1584 DataTree->takeTopLevelItem(index);
1585 for (int i = 0; i < index; i++) {
1588 linkPanel->removeImage(index);
1589 mSlicerManagers[index]->RemoveActors();
1590 delete mSlicerManagers[index];
1591 mSlicerManagers.erase(Manageriter);
1599 //------------------------------------------------------------------------------
1601 //------------------------------------------------------------------------------
1602 void vvMainWindow::ReloadImage(QTreeWidgetItem* item, int column)
1604 // int index = GetSlicerIndexFromItem(item);
1605 // QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
1606 // if (item->data(1,Qt::UserRole).toString() == "vector")
1607 // mSlicerManagers[index]->ReloadVF();
1609 // mSlicerManagers[index]->Reload();
1611 // QApplication::restoreOverrideCursor();
1612 int index = GetSlicerIndexFromItem(item);
1613 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
1614 QString role=item->data(1,Qt::UserRole).toString();
1615 if ( role == "vector")
1616 mSlicerManagers[index]->ReloadVF();
1617 else if (role == "overlay")
1618 mSlicerManagers[index]->ReloadOverlay();
1619 else if (role == "fusion")
1620 mSlicerManagers[index]->ReloadFusion();
1622 mSlicerManagers[index]->Reload();
1624 // Update view and info
1626 mSlicerManagers[index]->Render();
1627 QApplication::restoreOverrideCursor();
1629 //------------------------------------------------------------------------------
1631 //------------------------------------------------------------------------------
1632 void vvMainWindow::MousePositionChanged(int visibility,double x, double y, double z, double X, double Y, double Z , double value)
1634 infoPanel->setCurrentInfo(visibility,x,y,z,X,Y,Z,value);
1636 //------------------------------------------------------------------------------
1638 //------------------------------------------------------------------------------
1639 void vvMainWindow::VectorChanged(int visibility,double x, double y, double z, double value)
1641 overlayPanel->getCurrentVectorInfo(visibility,x,y,z,value);
1643 //------------------------------------------------------------------------------
1645 //------------------------------------------------------------------------------
1646 void vvMainWindow::OverlayChanged(int visibility, double valueOver, double valueRef)
1648 overlayPanel->getCurrentOverlayInfo(visibility,valueOver, valueRef);
1650 //------------------------------------------------------------------------------
1652 //------------------------------------------------------------------------------
1653 void vvMainWindow::FusionChanged(int visibility, double value)
1655 overlayPanel->getCurrentFusionInfo(visibility,value);
1657 //------------------------------------------------------------------------------
1659 //------------------------------------------------------------------------------
1660 void vvMainWindow::WindowsChanged(int window, int view, int slice)
1662 infoPanel->setViews(window, view, slice);
1664 //------------------------------------------------------------------------------
1666 //------------------------------------------------------------------------------
1667 void vvMainWindow::WindowLevelChanged(double window, double level,int preset,int colormap)
1669 windowSpinBox->setValue(window);
1670 levelSpinBox->setValue(level);
1671 colorMapComboBox->setCurrentIndex(colormap);
1672 presetComboBox->setCurrentIndex(preset);
1674 //------------------------------------------------------------------------------
1676 //------------------------------------------------------------------------------
1677 void vvMainWindow::WindowLevelEdited()
1679 presetComboBox->setCurrentIndex(6);
1680 UpdateWindowLevel();
1682 //------------------------------------------------------------------------------
1684 //------------------------------------------------------------------------------
1685 void vvMainWindow::UpdateWindowLevel()
1687 if (DataTree->selectedItems().size()) {
1688 if (presetComboBox->currentIndex() == 7) //For ventilation
1689 colorMapComboBox->setCurrentIndex(5);
1690 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1691 mSlicerManagers[index]->SetColorWindow(windowSpinBox->value());
1692 mSlicerManagers[index]->SetColorLevel(levelSpinBox->value());
1693 mSlicerManagers[index]->SetPreset(presetComboBox->currentIndex());
1694 mSlicerManagers[index]->Render();
1695 windowSpinBox->setValue(mSlicerManagers[index]->GetColorWindow());
1696 levelSpinBox->setValue(mSlicerManagers[index]->GetColorLevel());
1699 //------------------------------------------------------------------------------
1701 //------------------------------------------------------------------------------
1702 void vvMainWindow::UpdateColorMap()
1704 if (DataTree->selectedItems().size()) {
1705 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1706 mSlicerManagers[index]->SetColorMap(colorMapComboBox->currentIndex());
1707 mSlicerManagers[index]->Render();
1710 //------------------------------------------------------------------------------
1711 void vvMainWindow::SwitchWindowLevel()
1713 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1714 int window = mSlicerManagers[index]->GetColorWindow();
1715 presetComboBox->setCurrentIndex(6);
1716 windowSpinBox->setValue(-window);
1717 UpdateWindowLevel();
1719 //------------------------------------------------------------------------------
1721 //------------------------------------------------------------------------------
1722 void vvMainWindow::ApplyWindowLevelToAllImages()
1724 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
1725 if (mSlicerManagers[i] == NULL)
1727 mSlicerManagers[i]->SetColorWindow(windowSpinBox->value());
1728 mSlicerManagers[i]->SetColorLevel(levelSpinBox->value());
1729 mSlicerManagers[i]->SetPreset(6);
1730 mSlicerManagers[i]->Render();
1733 //------------------------------------------------------------------------------
1735 //------------------------------------------------------------------------------
1736 void vvMainWindow::UpdateLinkManager(std::string id, int slicer, double x, double y, double z, int temps)
1738 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
1739 if (mSlicerManagers[i]->GetId() == id) {
1740 //mSlicerManagers[i]->SetTSlice(temps);
1741 mSlicerManagers[i]->GetSlicer(slicer)->SetCurrentPosition(x,y,z,temps);
1742 mSlicerManagers[i]->UpdateViews(0,slicer);
1747 //------------------------------------------------------------------------------
1749 //------------------------------------------------------------------------------
1750 void vvMainWindow::UpdateLinkedNavigation(std::string id, vvSlicerManager * sm, vvSlicer* refSlicer)
1752 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
1753 if (id == mSlicerManagers[i]->GetId()) {
1754 mSlicerManagers[i]->UpdateLinkedNavigation(refSlicer);
1758 //------------------------------------------------------------------------------
1760 //------------------------------------------------------------------------------
1761 void vvMainWindow::ShowContextMenu(QPoint point)
1763 if (!DataTree->selectedItems().size()) {
1764 contextActions[1]->setEnabled(0);
1765 contextActions[2]->setEnabled(0);
1766 contextActions[3]->setEnabled(0);
1767 contextActions[4]->setEnabled(0);
1768 contextActions[5]->setEnabled(0);
1769 contextActions[6]->setEnabled(0);
1771 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1772 contextActions[1]->setEnabled(1);
1773 contextActions[2]->setEnabled(
1774 DataTree->itemWidget(DataTree->selectedItems()[0],
1775 COLUMN_RELOAD_IMAGE)->isEnabled());
1776 contextActions[3]->setEnabled(1);
1777 contextActions[5]->setEnabled(1);
1778 contextActions[6]->setEnabled(1);
1780 if (mSlicerManagers[index]->GetDimension() < 3)
1781 contextActions[4]->setEnabled(0);
1783 contextActions[4]->setEnabled(1);
1785 contextMenu.exec(QCursor::pos());
1787 //------------------------------------------------------------------------------
1789 //------------------------------------------------------------------------------
1790 void vvMainWindow::CloseImage()
1792 CloseImage(DataTree->selectedItems()[0],0);
1794 //------------------------------------------------------------------------------
1796 //------------------------------------------------------------------------------
1797 void vvMainWindow::ReloadImage()
1799 ReloadImage(DataTree->selectedItems()[0],0);
1801 //------------------------------------------------------------------------------
1803 //------------------------------------------------------------------------------
1804 void vvMainWindow::SelectOverlayImage()
1806 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1808 //check if one overlay image is added
1809 for (int child = 0; child < DataTree->topLevelItem(index)->childCount(); child++)
1810 if (DataTree->topLevelItem(index)->child(child)->data(1,Qt::UserRole).toString() == "overlay") {
1811 QString error = "Cannot add more than one compared image\n";
1812 error += "Please remove first ";
1813 error += DataTree->topLevelItem(index)->child(child)->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
1814 QMessageBox::information(this,tr("Problem adding compared image !"),error);
1818 QString Extensions = EXTENSIONS;
1819 Extensions += ";;All Files (*)";
1820 QString file = QFileDialog::getOpenFileName(this,tr("Load Overlay image"),mInputPathName,Extensions);
1821 if (!file.isEmpty())
1822 AddOverlayImage(index,file);
1824 //------------------------------------------------------------------------------
1826 //------------------------------------------------------------------------------
1827 void vvMainWindow::AddOverlayImage(int index, QString file)
1830 mInputPathName = itksys::SystemTools::GetFilenamePath(file.toStdString()).c_str();
1831 itk::ImageIOBase::Pointer reader = itk::ImageIOFactory::CreateImageIO(
1832 file.toStdString().c_str(), itk::ImageIOFactory::ReadMode);
1833 reader->SetFileName(file.toStdString().c_str());
1834 reader->ReadImageInformation();
1835 std::string component = reader->GetComponentTypeAsString(reader->GetComponentType());
1836 int dimension = reader->GetNumberOfDimensions();
1837 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
1838 vvProgressDialog progress("Opening " + file.toStdString());
1839 qApp->processEvents();
1841 std::string filename = itksys::SystemTools::GetFilenameWithoutExtension(file.toStdString()).c_str();
1842 if (mSlicerManagers[index]->SetOverlay(file.toStdString(),dimension, component)) {
1843 //create an item in the tree with good settings
1844 QTreeWidgetItem *item = new QTreeWidgetItem();
1845 item->setData(0,Qt::UserRole,file.toStdString().c_str());
1846 item->setData(1,Qt::UserRole,tr("overlay"));
1847 QFileInfo fileinfo(file); //Do not show the path
1848 item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,fileinfo.fileName());
1849 item->setToolTip(COLUMN_IMAGE_NAME,fileinfo.absoluteFilePath());
1850 qApp->processEvents();
1852 for (int j = 1; j <= 4; j++) {
1853 item->setData(j,Qt::CheckStateRole,DataTree->topLevelItem(index)->data(j,Qt::CheckStateRole));
1854 mSlicerManagers[index]->GetSlicer(j-1)->SetActorVisibility("overlay",0,
1855 DataTree->topLevelItem(index)->data(j,Qt::CheckStateRole).toInt());
1858 //Create the buttons for reload and close
1859 qApp->processEvents();
1860 QTreePushButton* cButton = new QTreePushButton;
1861 cButton->setItem(item);
1862 cButton->setColumn(COLUMN_CLOSE_IMAGE);
1863 cButton->setToolTip(tr("close image"));
1864 cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
1865 connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
1866 this,SLOT(CloseImage(QTreeWidgetItem*, int)));
1868 QTreePushButton* rButton = new QTreePushButton;
1869 rButton->setItem(item);
1870 rButton->setColumn(COLUMN_RELOAD_IMAGE);
1871 rButton->setToolTip(tr("reload image"));
1872 rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
1873 connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
1874 this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
1876 DataTree->topLevelItem(index)->setExpanded(1);
1877 DataTree->topLevelItem(index)->addChild(item);
1878 DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
1879 DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
1881 //set the id of the image
1882 QString id = DataTree->topLevelItem(index)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString();
1883 item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
1885 qApp->processEvents();
1887 QApplication::restoreOverrideCursor();
1889 QApplication::restoreOverrideCursor();
1890 QString error = "Cannot import the new image.\n";
1891 error += mSlicerManagers[index]->GetLastError().c_str();
1892 QMessageBox::information(this,tr("Problem reading image !"),error);
1895 //------------------------------------------------------------------------------
1898 //------------------------------------------------------------------------------
1899 void vvMainWindow::AddROI(int index, QString file)
1902 // Get slice manager
1906 vvImageReader * mReader = new vvImageReader;
1907 mReader->SetInputFilename(filename.toStdString());
1908 mReader->Update(IMAGE);
1909 if (mReader->GetLastError().size() != 0) {
1910 std::cerr << "Error while reading " << filename.toStdString() << std::endl;
1911 QString error = "Cannot open file \n";
1912 error += mReader->GetLastError().c_str();
1913 QMessageBox::information(this,tr("Reading problem"),error);
1917 vvImage::Pointer roi = mReader->GetOutput();
1919 // Create roi in new tool
1920 vvToolStructureSetManager::AddImage(mCurrentSlicerManager, roi);
1923 //------------------------------------------------------------------------------
1925 //------------------------------------------------------------------------------
1926 void vvMainWindow::SelectFusionImage()
1928 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
1930 //check if one fusion image is added
1931 for (int child = 0; child < DataTree->topLevelItem(index)->childCount(); child++)
1932 if (DataTree->topLevelItem(index)->child(child)->data(1,Qt::UserRole).toString() == "fusion") {
1933 QString error = "Cannot add more than one fusion image\n";
1934 error += "Please remove first ";
1935 error += DataTree->topLevelItem(index)->child(child)->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
1936 QMessageBox::information(this,tr("Problem adding fusion image !"),error);
1940 QString Extensions = EXTENSIONS;
1941 Extensions += ";;All Files (*)";
1942 QString file = QFileDialog::getOpenFileName(this,tr("Load Fusion image"),mInputPathName,Extensions);
1943 if (!file.isEmpty())
1944 AddFusionImage(index,file);
1946 //------------------------------------------------------------------------------
1948 //------------------------------------------------------------------------------
1949 void vvMainWindow::AddFusionImage(int index, QString file)
1951 mInputPathName = itksys::SystemTools::GetFilenamePath(file.toStdString()).c_str();
1952 itk::ImageIOBase::Pointer reader = itk::ImageIOFactory::CreateImageIO(
1953 file.toStdString().c_str(), itk::ImageIOFactory::ReadMode);
1954 reader->SetFileName(file.toStdString().c_str());
1955 reader->ReadImageInformation();
1956 std::string component = reader->GetComponentTypeAsString(reader->GetComponentType());
1958 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
1959 vvProgressDialog progress("Opening fusion");
1960 qApp->processEvents();
1962 std::string filename = itksys::SystemTools::GetFilenameWithoutExtension(file.toStdString()).c_str();
1963 if (mSlicerManagers[index]->SetFusion(file.toStdString(),
1964 reader->GetNumberOfDimensions(), component)) {
1965 //create an item in the tree with good settings
1966 QTreeWidgetItem *item = new QTreeWidgetItem();
1967 item->setData(0,Qt::UserRole,file.toStdString().c_str());
1968 item->setData(1,Qt::UserRole,tr("fusion"));
1969 QFileInfo fileinfo(filename.c_str()); //Do not show the path
1970 item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,fileinfo.fileName());
1971 item->setToolTip(COLUMN_IMAGE_NAME,fileinfo.absoluteFilePath());
1972 qApp->processEvents();
1974 for (int j = 1; j <= 4; j++) {
1975 item->setData(j,Qt::CheckStateRole,DataTree->topLevelItem(index)->data(j,Qt::CheckStateRole));
1976 mSlicerManagers[index]->GetSlicer(j-1)->SetActorVisibility("fusion",0,
1977 DataTree->topLevelItem(index)->data(j,Qt::CheckStateRole).toInt());
1980 //Create the buttons for reload and close
1981 qApp->processEvents();
1982 QTreePushButton* cButton = new QTreePushButton;
1983 cButton->setItem(item);
1984 cButton->setColumn(COLUMN_CLOSE_IMAGE);
1985 cButton->setToolTip(tr("close image"));
1986 cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
1987 connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
1988 this,SLOT(CloseImage(QTreeWidgetItem*, int)));
1990 QTreePushButton* rButton = new QTreePushButton;
1991 rButton->setItem(item);
1992 rButton->setColumn(COLUMN_RELOAD_IMAGE);
1993 rButton->setToolTip(tr("reload image"));
1994 rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
1995 connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
1996 this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
1998 DataTree->topLevelItem(index)->setExpanded(1);
1999 DataTree->topLevelItem(index)->addChild(item);
2000 DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
2001 DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
2003 //set the id of the image
2004 QString id = DataTree->topLevelItem(index)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString();
2005 item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
2007 qApp->processEvents();
2009 QApplication::restoreOverrideCursor();
2011 QApplication::restoreOverrideCursor();
2012 QString error = "Cannot import the new image.\n";
2013 error += mSlicerManagers[index]->GetLastError().c_str();
2014 QMessageBox::information(this,tr("Problem reading image !"),error);
2017 QString error = "Cannot import the new image.\n";
2018 QMessageBox::information(this,tr("Problem reading image !"),error);
2021 //------------------------------------------------------------------------------
2024 //------------------------------------------------------------------------------
2025 void vvMainWindow::OpenField()
2027 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2028 //check if a vector field has already been added
2029 for (int child = 0; child < DataTree->topLevelItem(index)->childCount(); child++)
2030 if (DataTree->topLevelItem(index)->child(child)->data(1,Qt::UserRole).toString() == "vector") {
2031 QString error = "Cannot add more than one vector field\n";
2032 error += "Please remove first ";
2033 error += DataTree->topLevelItem(index)->child(child)->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
2034 QMessageBox::information(this,tr("Problem adding vector field!"),error);
2038 QString Extensions = "Images ( *.mhd)";
2039 Extensions += ";;Images ( *.vf)";
2040 QString file = QFileDialog::getOpenFileName(this,tr("Load deformation field"),mInputPathName,Extensions);
2041 if (!file.isEmpty())
2042 AddField(file,index);
2044 //------------------------------------------------------------------------------
2047 //------------------------------------------------------------------------------
2048 void vvMainWindow::AddFieldEntry(QString filename,int index,bool from_disk)
2050 //create an item in the tree with good settings
2051 QTreeWidgetItem *item = new QTreeWidgetItem();
2052 item->setData(0,Qt::UserRole,filename.toStdString().c_str());
2053 item->setData(1,Qt::UserRole,tr("vector"));
2054 QFileInfo fileinfo(filename); //Do not show the path
2055 item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,fileinfo.fileName());
2056 item->setToolTip(COLUMN_IMAGE_NAME,fileinfo.absoluteFilePath());
2057 qApp->processEvents();
2059 for (int j = 1; j <= 4; j++) {
2060 item->setData(j,Qt::CheckStateRole,DataTree->topLevelItem(index)->data(j,Qt::CheckStateRole));
2061 mSlicerManagers[index]->GetSlicer(j-1)->SetActorVisibility("vector",0,
2062 DataTree->topLevelItem(index)->data(j,Qt::CheckStateRole).toInt());
2065 //Create the buttons for reload and close
2066 qApp->processEvents();
2067 QTreePushButton* cButton = new QTreePushButton;
2068 cButton->setItem(item);
2069 cButton->setColumn(COLUMN_CLOSE_IMAGE);
2070 cButton->setToolTip(tr("close vector field"));
2071 cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
2072 connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
2073 this,SLOT(CloseImage(QTreeWidgetItem*, int)));
2075 QTreePushButton* rButton = new QTreePushButton;
2076 rButton->setItem(item);
2077 rButton->setColumn(COLUMN_RELOAD_IMAGE);
2078 rButton->setToolTip(tr("reload vector field"));
2079 rButton->setEnabled(from_disk);
2080 rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
2081 connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
2082 this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
2084 DataTree->topLevelItem(index)->setExpanded(1);
2085 DataTree->topLevelItem(index)->addChild(item);
2086 DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
2087 DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
2089 //set the id of the image
2090 QString id = DataTree->topLevelItem(index)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString();
2091 item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
2093 qApp->processEvents();
2095 QApplication::restoreOverrideCursor();
2097 //------------------------------------------------------------------------------
2100 //------------------------------------------------------------------------------
2101 void vvMainWindow::AddField(vvImage::Pointer vf,QString file,int index)
2103 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
2104 vvSlicerManager* imageManager = mSlicerManagers[index];
2105 if (imageManager->SetVF(vf,file.toStdString())) {
2106 AddFieldEntry(file,index,false);
2108 QString error = "Cannot import the vector field for this image.\n";
2109 error += imageManager->GetLastError().c_str();
2110 QMessageBox::information(this,tr("Problem reading VF !"),error);
2112 QApplication::restoreOverrideCursor();
2114 //------------------------------------------------------------------------------
2117 //------------------------------------------------------------------------------
2118 void vvMainWindow::AddField(QString file,int index)
2120 if (QFile::exists(file)) {
2121 mInputPathName = itksys::SystemTools::GetFilenamePath(file.toStdString()).c_str();
2123 //init the progress events
2124 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
2125 vvProgressDialog progress("Opening " + file.toStdString());
2126 qApp->processEvents();
2128 //read the vector and put it in the current mSlicerManager
2129 vvSlicerManager* imageManager = mSlicerManagers[index];
2130 qApp->processEvents();
2132 std::string filename = itksys::SystemTools::GetFilenameWithoutExtension(file.toStdString()).c_str();
2133 if (imageManager->SetVF(file.toStdString())) {
2134 imageManager->Render();
2135 AddFieldEntry(file,index,true);
2137 QApplication::restoreOverrideCursor();
2138 QString error = "Cannot import the vector field for this image.\n";
2139 error += imageManager->GetLastError().c_str();
2140 QMessageBox::information(this,tr("Problem reading VF !"),error);
2143 QMessageBox::information(this,tr("Problem reading VF !"),"File doesn't exist!");
2146 //------------------------------------------------------------------------------
2149 //------------------------------------------------------------------------------
2150 void vvMainWindow::SetVFProperty(int subsampling, int scale, int log, int width, double r, double g, double b)
2152 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2153 if (mSlicerManagers[index]->GetSlicer(0)->GetVF()) {
2154 for (int i = 0; i < 4; i++) {
2155 mSlicerManagers[index]->GetSlicer(i)->SetVFSubSampling(subsampling);
2156 mSlicerManagers[index]->GetSlicer(i)->SetVFScale(scale);
2157 mSlicerManagers[index]->GetSlicer(i)->SetVFWidth(width);
2158 mSlicerManagers[index]->GetSlicer(i)->SetVFColor(r,g,b);
2160 mSlicerManagers[index]->GetSlicer(i)->SetVFLog(1);
2162 mSlicerManagers[index]->GetSlicer(i)->SetVFLog(0);
2166 //------------------------------------------------------------------------------
2169 //------------------------------------------------------------------------------
2170 void vvMainWindow::SetOverlayProperty(int color)
2172 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2173 if (mSlicerManagers[index]->GetSlicer(0)->GetOverlay()) {
2174 mSlicerManagers[index]->SetOverlayColor(color);
2175 mSlicerManagers[index]->SetColorMap(0);
2176 mSlicerManagers[index]->Render();
2179 //------------------------------------------------------------------------------
2181 //------------------------------------------------------------------------------
2182 void vvMainWindow::SetFusionProperty(int opacity, int colormap,double window, double level)
2184 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2185 if (mSlicerManagers[index]->GetSlicer(0)->GetFusion()) {
2186 mSlicerManagers[index]->SetFusionOpacity(opacity);
2187 mSlicerManagers[index]->SetFusionColorMap(colormap);
2188 mSlicerManagers[index]->SetFusionWindow(window);
2189 mSlicerManagers[index]->SetFusionLevel(level);
2190 mSlicerManagers[index]->SetColorMap(0);
2191 mSlicerManagers[index]->Render();
2194 //------------------------------------------------------------------------------
2196 //------------------------------------------------------------------------------
2197 void vvMainWindow::SaveAs()
2199 if (DataTree->selectedItems()[0]->data(1,Qt::UserRole).toString() == "vector") {
2200 QMessageBox::warning(this,tr("Unsupported type"),tr("Sorry, saving a vector field is unsupported for the moment"));
2204 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2205 int dimension = mSlicerManagers[index]->GetDimension();
2206 QStringList OutputListeFormat;
2207 OutputListeFormat.clear();
2208 if (dimension == 1) {
2209 OutputListeFormat.push_back(".mhd");
2211 if (dimension == 2) {
2212 OutputListeFormat.push_back(".bmp");
2213 OutputListeFormat.push_back(".png");
2214 OutputListeFormat.push_back(".jpeg");
2215 OutputListeFormat.push_back(".tif");
2216 OutputListeFormat.push_back(".mhd");
2217 OutputListeFormat.push_back(".hdr");
2218 OutputListeFormat.push_back(".vox");
2219 } else if (dimension == 3) {
2220 OutputListeFormat.push_back(".mhd");
2221 OutputListeFormat.push_back(".hdr");
2222 OutputListeFormat.push_back(".vox");
2223 } else if (dimension == 4) {
2224 OutputListeFormat.push_back(".mhd");
2226 QString Extensions = "AllFiles(*.*)";
2227 for (int i = 0; i < OutputListeFormat.count(); i++) {
2228 Extensions += ";;Images ( *";
2229 Extensions += OutputListeFormat[i];
2232 QString fileName = QFileDialog::getSaveFileName(this,
2234 mSlicerManagers[index]->GetFileName().c_str(),
2236 if (!fileName.isEmpty()) {
2237 std::string fileformat = itksys::SystemTools::GetFilenameLastExtension(fileName.toStdString());
2238 if (OutputListeFormat.contains(
2239 fileformat.c_str())) {
2240 QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
2241 std::string action = "Saving";
2242 vvProgressDialog progress("Saving "+fileName.toStdString());
2243 qApp->processEvents();
2244 vvImageWriter::Pointer writer = vvImageWriter::New();
2245 writer->SetOutputFileName(fileName.toStdString());
2246 writer->SetInput(mSlicerManagers[index]->GetImage());
2248 QApplication::restoreOverrideCursor();
2249 if (writer->GetLastError().size()) {
2250 QString error = "Saving did not succeed\n";
2251 error += writer->GetLastError().c_str();
2252 QMessageBox::information(this,tr("Saving Problem"),error);
2256 QString error = fileformat.c_str();
2257 if (error.isEmpty())
2258 error += "no file format specified !";
2260 error += " format unknown !!!\n";
2261 QMessageBox::information(this,tr("Saving Problem"),error);
2266 //------------------------------------------------------------------------------
2269 //------------------------------------------------------------------------------
2270 void vvMainWindow::AddLink(QString image1,QString image2)
2272 unsigned int sm1 = 0;
2273 unsigned int sm2 = 0;
2275 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
2276 if (image1.toStdString() == mSlicerManagers[i]->GetId()) {
2277 mSlicerManagers[i]->AddLink(image2.toStdString());
2280 if (image2.toStdString() == mSlicerManagers[i]->GetId()) {
2281 mSlicerManagers[i]->AddLink(image1.toStdString());
2286 if (linkPanel->isLinkAll()) {
2287 emit UpdateLinkedNavigation(mSlicerManagers[sm1]->GetId(), mSlicerManagers[mCurrentPickedImageIndex], mSlicerManagers[mCurrentPickedImageIndex]->GetSlicer(0));
2288 emit UpdateLinkedNavigation(mSlicerManagers[sm2]->GetId(), mSlicerManagers[mCurrentPickedImageIndex], mSlicerManagers[mCurrentPickedImageIndex]->GetSlicer(0));
2290 emit UpdateLinkedNavigation(mSlicerManagers[sm2]->GetId(), mSlicerManagers[sm1], mSlicerManagers[sm1]->GetSlicer(0));
2294 //------------------------------------------------------------------------------
2297 //------------------------------------------------------------------------------
2298 void vvMainWindow::RemoveLink(QString image1,QString image2)
2300 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
2301 if (image1.toStdString() == mSlicerManagers[i]->GetId()) {
2302 mSlicerManagers[i]->RemoveLink(image2.toStdString());
2304 if (image2.toStdString() == mSlicerManagers[i]->GetId()) {
2305 mSlicerManagers[i]->RemoveLink(image1.toStdString());
2309 //------------------------------------------------------------------------------
2311 //------------------------------------------------------------------------------
2312 void vvMainWindow::ChangeImageWithIndexOffset(vvSlicerManager *sm, int slicer, int offset)
2315 while(sm != mSlicerManagers[index])
2317 index = (index+offset) % mSlicerManagers.size();
2319 QTreeWidgetItem* item = GetItemFromSlicerManager(mSlicerManagers[index]);
2320 //CurrentImageChanged(mSlicerManagers[index]->GetId()); //select new image
2321 item->setData(slicer+1,Qt::CheckStateRole,2); //change checkbox
2322 DisplayChanged(item,slicer+1);
2324 //------------------------------------------------------------------------------
2326 void vvMainWindow::HorizontalSliderMoved(int value,int column, int slicer_index)
2328 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
2329 if (DataTree->topLevelItem(i)->data(column,Qt::CheckStateRole).toInt() > 1) {
2330 for (int j = 0; j < 4; j++) {
2331 mSlicerManagers[i]->SetTSliceInSlicer(value,j);
2332 //if (mSlicerManagers[i]->GetSlicer(j)->GetImageActor()->GetVisibility())
2333 //UpdateTSlice(j,value);
2335 mSlicerManagers[i]->GetSlicer(slicer_index)->Render();
2340 //------------------------------------------------------------------------------
2343 //------------------------------------------------------------------------------
2344 void vvMainWindow::NOHorizontalSliderMoved()
2346 // if (mCurrentTime == NOHorizontalSlider->value()) return;
2347 HorizontalSliderMoved(NOHorizontalSlider->value(),COLUMN_UL_VIEW,0);
2348 // mCurrentTime = NOHorizontalSlider->value();
2350 //------------------------------------------------------------------------------
2353 //------------------------------------------------------------------------------
2354 void vvMainWindow::NEHorizontalSliderMoved()
2356 // if (mCurrentTime == NEHorizontalSlider->value()) return;
2357 HorizontalSliderMoved(NEHorizontalSlider->value(),COLUMN_UR_VIEW,1);
2358 // mCurrentTime = NEHorizontalSlider->value();
2360 //------------------------------------------------------------------------------
2363 //------------------------------------------------------------------------------
2364 void vvMainWindow::SOHorizontalSliderMoved()
2366 // if (mCurrentTime == SOHorizontalSlider->value()) return;
2367 HorizontalSliderMoved(SOHorizontalSlider->value(),COLUMN_DL_VIEW,2);
2368 // mCurrentTime = SOHorizontalSlider->value();
2370 //------------------------------------------------------------------------------
2373 //------------------------------------------------------------------------------
2374 void vvMainWindow::SEHorizontalSliderMoved()
2376 // if (mCurrentTime == SEHorizontalSlider->value()) return;
2377 HorizontalSliderMoved(SEHorizontalSlider->value(),COLUMN_DR_VIEW,3);
2378 // mCurrentTime = SEHorizontalSlider->value();
2380 //------------------------------------------------------------------------------
2382 //------------------------------------------------------------------------------
2383 void vvMainWindow::NOVerticalSliderChanged()
2385 static int value=-1;
2386 if (value == NOVerticalSlider->value()) return;
2387 else value = NOVerticalSlider->value();
2388 // int value = NOVerticalSlider->value();
2389 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
2390 if (DataTree->topLevelItem(i)->data(COLUMN_UL_VIEW,Qt::CheckStateRole).toInt() > 1) {
2391 if (mSlicerManagers[i]->GetSlicer(0)->GetSlice() != value) {
2392 mSlicerManagers[i]->GetSlicer(0)->SetSlice(value);
2393 mSlicerManagers[i]->VerticalSliderHasChanged(0, value);
2395 // If nor Update/Render -> slider not work
2396 // only render = ok navigation, but for contour Update needed but slower ?
2398 mSlicerManagers[i]->UpdateSlice(0); // <-- DS add this. Not too much update ? YES. but needed for ImageContour ...
2399 //mSlicerManagers[i]->GetSlicer(0)->Render(); // <-- DS add this, needed for contour, seems ok ? not too slow ?
2405 //------------------------------------------------------------------------------
2408 //------------------------------------------------------------------------------
2409 void vvMainWindow::NEVerticalSliderChanged()
2411 static int value=-1;
2412 if (value == NEVerticalSlider->value()) return;
2413 else value = NEVerticalSlider->value();
2414 // int value = NEVerticalSlider->value();
2415 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
2416 if (DataTree->topLevelItem(i)->data(COLUMN_UR_VIEW,Qt::CheckStateRole).toInt() > 1) {
2417 if (mSlicerManagers[i]->GetSlicer(1)->GetSlice() != value) {
2418 mSlicerManagers[i]->GetSlicer(1)->SetSlice(value);
2419 mSlicerManagers[i]->VerticalSliderHasChanged(1, value);
2420 mSlicerManagers[i]->UpdateSlice(1);
2421 //mSlicerManagers[i]->GetSlicer(1)->Render(); // <-- DS add this, needed for contour, seems ok ? not too slow ?
2427 //------------------------------------------------------------------------------
2430 //------------------------------------------------------------------------------
2431 void vvMainWindow::SOVerticalSliderChanged()
2433 static int value=-1;
2434 if (value == SOVerticalSlider->value()) return;
2435 else value = SOVerticalSlider->value();
2436 //int value = SOVerticalSlider->value();
2437 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
2438 if (DataTree->topLevelItem(i)->data(COLUMN_DL_VIEW,Qt::CheckStateRole).toInt() > 1) {
2439 if (mSlicerManagers[i]->GetSlicer(2)->GetSlice() != value) {
2440 mSlicerManagers[i]->GetSlicer(2)->SetSlice(value);
2441 mSlicerManagers[i]->VerticalSliderHasChanged(2, value);
2442 mSlicerManagers[i]->UpdateSlice(2);
2443 //mSlicerManagers[i]->GetSlicer(2)->Render(); // <-- DS add this, needed for contour, seems ok ? not too slow ?
2445 // else { DD("avoid SOVerticalSlider slicer update"); }
2450 //------------------------------------------------------------------------------
2453 //------------------------------------------------------------------------------
2454 void vvMainWindow::SEVerticalSliderChanged()
2456 static int value=-1;
2457 if (value == SEVerticalSlider->value()) return;
2458 else value = SEVerticalSlider->value();
2459 // int value = SEVerticalSlider->value();
2460 for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
2461 if (DataTree->topLevelItem(i)->data(COLUMN_DR_VIEW,Qt::CheckStateRole).toInt() > 1) {
2462 if (mSlicerManagers[i]->GetSlicer(3)->GetSlice() != value) {
2463 mSlicerManagers[i]->GetSlicer(3)->SetSlice(value);
2464 mSlicerManagers[i]->VerticalSliderHasChanged(3, value);
2465 mSlicerManagers[i]->UpdateSlice(3);
2466 //mSlicerManagers[i]->GetSlicer(3)->Render(); // <-- DS add this, needed for contour, seems ok ? not too slow ?
2472 //------------------------------------------------------------------------------
2475 //------------------------------------------------------------------------------
2476 void vvMainWindow::UpdateSlice(int slicer, int slice)
2478 // DD("vvMainWindow::UpdateSlice");
2482 // if (slice != NOVerticalSlider->value())
2483 NOVerticalSlider->setValue(slice);
2486 NEVerticalSlider->setValue(slice);
2489 SOVerticalSlider->setValue(slice);
2492 SEVerticalSlider->setValue(slice);
2496 // DD("vvMainWindow:UpdateSlice END");
2498 //------------------------------------------------------------------------------
2501 //------------------------------------------------------------------------------
2502 void vvMainWindow::UpdateTSlice(int slicer, int slice)
2506 NOHorizontalSlider->setValue(slice);
2509 NEHorizontalSlider->setValue(slice);
2512 SOHorizontalSlider->setValue(slice);
2515 SEHorizontalSlider->setValue(slice);
2519 //------------------------------------------------------------------------------
2522 //------------------------------------------------------------------------------
2523 void vvMainWindow::UpdateSliceRange(int slicer, int min, int max, int tmin, int tmax)
2525 int position = int((min+max)/2);
2526 int tPosition = int((tmin+tmax)/2);
2528 NOVerticalSlider->setValue(position);
2529 NOVerticalSlider->setRange(min,max);
2530 NOHorizontalSlider->setRange(tmin,tmax);
2531 NOHorizontalSlider->setValue(tPosition);
2532 } else if (slicer == 1) {
2533 NEVerticalSlider->setValue(position);
2534 NEVerticalSlider->setRange(min,max);
2535 NEHorizontalSlider->setRange(tmin,tmax);
2536 NEHorizontalSlider->setValue(tPosition);
2537 } else if (slicer == 2) {
2538 SOVerticalSlider->setValue(position);
2539 SOVerticalSlider->setRange(min,max);
2540 SOHorizontalSlider->setRange(tmin,tmax);
2541 SOHorizontalSlider->setValue(tPosition);
2542 } else if (slicer == 3) {
2543 SEVerticalSlider->setValue(position);
2544 SEVerticalSlider->setRange(min,max);
2545 SEHorizontalSlider->setRange(tmin,tmax);
2546 SEHorizontalSlider->setValue(tPosition);
2549 //------------------------------------------------------------------------------
2552 //------------------------------------------------------------------------------
2553 void vvMainWindow::SaveNOScreenshot()
2555 SaveScreenshot(NOViewWidget);
2557 //------------------------------------------------------------------------------
2560 //------------------------------------------------------------------------------
2561 void vvMainWindow::SaveNEScreenshot()
2563 SaveScreenshot(NEViewWidget);
2565 //------------------------------------------------------------------------------
2568 //------------------------------------------------------------------------------
2569 void vvMainWindow::SaveSOScreenshot()
2571 SaveScreenshot(SOViewWidget);
2573 //------------------------------------------------------------------------------
2576 //------------------------------------------------------------------------------
2577 void vvMainWindow::SaveSEScreenshot()
2579 SaveScreenshot(SEViewWidget);
2581 //------------------------------------------------------------------------------
2584 //------------------------------------------------------------------------------
2585 void vvMainWindow::SaveScreenshot(QVTKWidget *widget)
2587 QString Extensions = "Images( *.png);;";
2588 Extensions += "Images( *.jpg);;";
2589 Extensions += "Images( *.bmp);;";
2590 Extensions += "Images( *.tif);;";
2591 Extensions += "Images( *.ppm)";
2592 #ifdef VTK_USE_FFMPEG_ENCODER
2593 Extensions += "Images( *.avi)";
2595 #ifdef VTK_USE_MPEG2_ENCODER
2596 Extensions += "Images( *.mpg)";
2599 int smIndex=GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2600 QString fileName = QFileDialog::getSaveFileName(this,
2602 itksys::SystemTools::GetFilenamePath(mSlicerManagers[smIndex]->GetFileName()).c_str(),
2605 if (!fileName.isEmpty()) {
2606 vtkSmartPointer<vtkWindowToImageFilter> w2i = vtkSmartPointer<vtkWindowToImageFilter>::New();
2607 w2i->SetInput(widget->GetRenderWindow());
2609 vtkImageData *image = w2i->GetOutput();
2611 const char *ext = fileName.toStdString().c_str() + strlen(fileName.toStdString().c_str()) - 4;
2612 if (!strcmp(ext, ".bmp")) {
2613 vtkBMPWriter *bmp = vtkBMPWriter::New();
2614 bmp->SetInput(image);
2615 bmp->SetFileName(fileName.toStdString().c_str());
2618 } else if (!strcmp(ext, ".tif")) {
2619 vtkTIFFWriter *tif = vtkTIFFWriter::New();
2620 tif->SetInput(image);
2621 tif->SetFileName(fileName.toStdString().c_str());
2624 } else if (!strcmp(ext, ".ppm")) {
2625 vtkPNMWriter *pnm = vtkPNMWriter::New();
2626 pnm->SetInput(image);
2627 pnm->SetFileName(fileName.toStdString().c_str());
2630 } else if (!strcmp(ext, ".png")) {
2631 vtkPNGWriter *png = vtkPNGWriter::New();
2632 png->SetInput(image);
2633 png->SetFileName(fileName.toStdString().c_str());
2636 } else if (!strcmp(ext, ".jpg")) {
2637 vtkJPEGWriter *jpg = vtkJPEGWriter::New();
2638 jpg->SetInput(image);
2639 jpg->SetFileName(fileName.toStdString().c_str());
2642 #ifdef VTK_USE_FFMPEG_ENCODER
2643 } else if (!strcmp(ext, ".avi")) {
2644 vtkFFMPEGWriter *mpg = vtkFFMPEGWriter::New();
2645 mpg->SetInput(image);
2646 mpg->SetFileName(fileName.toStdString().c_str());
2651 vvImage * vvImg = mSlicerManagers[smIndex]->GetImage();
2652 int nSlice = vvImg->GetVTKImages().size();
2653 for(int i=0; i<nSlice; i++) {
2654 mSlicerManagers[smIndex]->SetNextTSlice(0);
2655 vtkSmartPointer<vtkWindowToImageFilter> w2i = vtkSmartPointer<vtkWindowToImageFilter>::New();
2656 w2i->SetInput(widget->GetRenderWindow());
2658 mpg->SetInput(w2i->GetOutput());
2664 #ifdef VTK_USE_MPEG2_ENCODER
2665 } else if (!strcmp(ext, ".mpg")) {
2666 vtkMPEG2Writer *mpg = vtkMPEG2Writer::New();
2667 mpg->SetInput(image);
2668 mpg->SetFileName(fileName.toStdString().c_str());
2671 vvImage * vvImg = mSlicerManagers[smIndex]->GetImage();
2672 int nSlice = vvImg->GetVTKImages().size();
2673 for(int i=0; i<nSlice; i++) {
2674 mSlicerManagers[smIndex]->SetNextTSlice(0);
2675 vtkSmartPointer<vtkWindowToImageFilter> w2i = vtkSmartPointer<vtkWindowToImageFilter>::New();
2676 w2i->SetInput(widget->GetRenderWindow());
2678 mpg->SetInput(w2i->GetOutput());
2685 QMessageBox::information(this,tr("Problem saving screenshot !"),tr("Cannot save image.\nPlease set a file extension !!!"));
2689 //------------------------------------------------------------------------------
2692 //------------------------------------------------------------------------------
2693 void vvMainWindow::GoToCursor()
2695 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2696 for (int column = 1; column < 5; column++) {
2697 if (DataTree->selectedItems()[0]->data(column,Qt::CheckStateRole).toInt() > 1) {
2698 double* cursorPos = mSlicerManagers[index]->GetSlicer(column-1)->GetCursorPosition();
2699 mSlicerManagers[index]->GetSlicer(column-1)->SetCurrentPosition(
2700 cursorPos[0],cursorPos[1],cursorPos[2],cursorPos[3]);
2701 mSlicerManagers[index]->UpdateViews(1,column-1);
2702 mSlicerManagers[index]->UpdateLinked(column-1);
2707 //------------------------------------------------------------------------------
2709 //------------------------------------------------------------------------------
2710 void vvMainWindow::PlayPause()
2714 playButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/player_play.png")));
2718 int image_number=DataTree->topLevelItemCount();
2720 for (int i=0; i<image_number; i++)
2721 if (mSlicerManagers[i]->GetImage()->GetVTKImages().size() > 1) {
2727 playButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/player_pause.png")));
2728 QTimer::singleShot(1000/mFrameRate, this, SLOT(PlayNext()));
2732 //------------------------------------------------------------------------------
2734 //------------------------------------------------------------------------------
2735 void vvMainWindow::PlayNext()
2737 if (playMode && !this->isHidden()) {
2738 int image_number=DataTree->topLevelItemCount();
2739 ///Only play one slicer per SM, and only if the SM is being displayed
2740 for (int i=0; i<image_number; i++)
2741 for (int j=0; j<4; j++)
2742 if (mSlicerManagers[i]->GetImage()->GetVTKImages().size() > 1 &&
2743 DataTree->topLevelItem(i)->data(j+1,Qt::CheckStateRole).toInt() > 0) {
2744 mSlicerManagers[i]->SetNextTSlice(j);
2747 QTimer::singleShot(1000/mFrameRate, this, SLOT(PlayNext()));
2750 //------------------------------------------------------------------------------
2752 void vvMainWindow::ShowLastImage()
2754 if (mSlicerManagers.size() > 1) {
2755 QTreeWidgetItem * item=DataTree->topLevelItem(DataTree->topLevelItemCount()-1);
2756 CurrentImageChanged(mSlicerManagers.back()->GetId()); //select new image
2757 item->setData(1,Qt::CheckStateRole,2); //show the new image in the first panel
2758 DisplayChanged(item,1);
2762 //------------------------------------------------------------------------------
2763 void vvMainWindow::UpdateRenderWindows()
2765 if (NOViewWidget->GetRenderWindow()) NOViewWidget->GetRenderWindow()->Render();
2766 if (NEViewWidget->GetRenderWindow()) NEViewWidget->GetRenderWindow()->Render();
2767 if (SOViewWidget->GetRenderWindow()) SOViewWidget->GetRenderWindow()->Render();
2768 if (SEViewWidget->GetRenderWindow()) SEViewWidget->GetRenderWindow()->Render();
2770 //------------------------------------------------------------------------------
2772 //------------------------------------------------------------------------------
2773 void vvMainWindow::SegmentationOnCurrentImage()
2775 int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2777 vvSegmentationDialog segmentation;
2778 segmentation.SetImage(mSlicerManagers[index]->GetSlicer(0)->GetImage());
2779 segmentation.exec();
2781 //------------------------------------------------------------------------------
2783 void vvMainWindow::SurfaceViewerLaunch()
2785 vvSurfaceViewerDialog surfaceViewer;
2786 surfaceViewer.exec();
2788 //------------------------------------------------------------------------------
2791 //------------------------------------------------------------------------------
2792 int vvMainWindow::GetImageDuplicateFilenameNumber(std::string filename)
2795 for(unsigned int l=0; l<mSlicerManagers.size(); l++) {
2796 vvSlicerManager * v = mSlicerManagers[l];
2797 if (v->GetBaseFileName() ==
2798 vtksys::SystemTools::GetFilenameName(vtksys::SystemTools::GetFilenameWithoutLastExtension(filename))) {
2799 number = std::max(number, v->GetBaseFileNameNumber()+1);
2804 //------------------------------------------------------------------------------
2807 //------------------------------------------------------------------------------
2808 vvSlicerManager* vvMainWindow::AddImage(vvImage::Pointer image,std::string filename)
2810 // Change filename if another image exist with the same name
2811 int number = GetImageDuplicateFilenameNumber(filename);
2813 // Create new SliceManager
2814 vvSlicerManager* slicer_manager = new vvSlicerManager(4);
2815 slicer_manager->SetImage(image);//, IMAGE, number);
2816 // filename = filename+"_"+clitk::toString(number);
2817 slicer_manager->SetFilename(filename, number);
2818 mSlicerManagers.push_back(slicer_manager);
2820 //create an item in the tree with good settings
2821 QTreeWidgetItem *item = new QTreeWidgetItem();
2822 item->setData(0,Qt::UserRole,slicer_manager->GetFileName().c_str());//files[i].c_str());
2823 item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,slicer_manager->GetFileName().c_str());//filename.c_str());
2824 qApp->processEvents();
2826 for (int j = 1; j <= 4; j++) item->setData(j,Qt::CheckStateRole,1);
2828 //Create the buttons for reload and close
2829 qApp->processEvents();
2830 QTreePushButton* cButton = new QTreePushButton;
2831 cButton->setItem(item);
2832 cButton->setColumn(COLUMN_CLOSE_IMAGE);
2833 cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
2834 connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
2835 this,SLOT(CloseImage(QTreeWidgetItem*, int)));
2837 QTreePushButton* rButton = new QTreePushButton;
2838 rButton->setItem(item);
2839 rButton->setColumn(COLUMN_RELOAD_IMAGE);
2840 rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
2841 rButton->setEnabled(0);
2842 connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
2843 this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
2845 DataTree->addTopLevelItem(item);
2846 DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
2847 DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
2849 //set the id of the image
2850 QString id = slicer_manager->GetFileName().c_str() + QString::number(mSlicerManagers.size()-1);
2851 item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
2852 mSlicerManagers.back()->SetId(id.toStdString());
2854 linkPanel->addImage(slicer_manager->GetFileName().c_str()// filename
2855 , id.toStdString());
2857 connect(mSlicerManagers.back(), SIGNAL(currentImageChanged(std::string)),
2858 this, SLOT(CurrentImageChanged(std::string)));
2859 connect(mSlicerManagers.back(), SIGNAL(currentPickedImageChanged(std::string)),
2860 this, SLOT(CurrentPickedImageChanged(std::string)));
2861 connect(mSlicerManagers.back(), SIGNAL(UpdatePosition(int, double, double, double, double, double, double, double)),
2862 this, SLOT(MousePositionChanged(int,double, double, double, double, double, double, double)));
2863 connect(mSlicerManagers.back(), SIGNAL(UpdateVector(int, double, double, double, double)),
2864 this, SLOT(VectorChanged(int,double,double,double, double)));
2865 connect(mSlicerManagers.back(), SIGNAL(UpdateOverlay(int, double, double)),
2866 this, SLOT(OverlayChanged(int,double,double)));
2867 connect(mSlicerManagers.back(), SIGNAL(UpdateFusion(int, double)),
2868 this, SLOT(FusionChanged(int,double)));
2869 connect(mSlicerManagers.back(), SIGNAL(UpdateWindows(int, int, int)),
2870 this,SLOT(WindowsChanged(int, int, int)));
2871 connect(mSlicerManagers.back(), SIGNAL(WindowLevelChanged(double, double,int, int)),
2872 this,SLOT(WindowLevelChanged(double, double, int, int)));
2873 connect(mSlicerManagers.back(), SIGNAL(UpdateSlice(int,int)),
2874 this,SLOT(UpdateSlice(int,int)));
2875 connect(mSlicerManagers.back(), SIGNAL(UpdateTSlice(int, int)),
2876 this,SLOT(UpdateTSlice(int, int)));
2877 connect(mSlicerManagers.back(), SIGNAL(UpdateSliceRange(int,int,int,int,int)),
2878 this,SLOT(UpdateSliceRange(int,int,int,int,int)));
2879 connect(mSlicerManagers.back(), SIGNAL(UpdateLinkManager(std::string,int,double,double,double,int)),
2880 this,SLOT(UpdateLinkManager(std::string,int,double,double,double,int)));
2881 connect(mSlicerManagers.back(), SIGNAL(UpdateLinkedNavigation(std::string,vvSlicerManager*,vvSlicer*)),
2882 this,SLOT(UpdateLinkedNavigation(std::string,vvSlicerManager*,vvSlicer*)));
2883 connect(mSlicerManagers.back(), SIGNAL(ChangeImageWithIndexOffset(vvSlicerManager*,int,int)),
2884 this,SLOT(ChangeImageWithIndexOffset(vvSlicerManager*,int,int)));
2885 connect(mSlicerManagers.back(), SIGNAL(LandmarkAdded()),landmarksPanel,SLOT(AddPoint()));
2887 qApp->processEvents();
2891 qApp->processEvents();
2895 return slicer_manager;
2897 //------------------------------------------------------------------------------
2900 //------------------------------------------------------------------------------
2901 void vvMainWindow::UpdateCurrentSlicer()
2904 if (DataTree->selectedItems().size() > 0) {
2905 index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
2907 mSlicerManagerCurrentIndex = index;
2909 //------------------------------------------------------------------------------