#=========================================================
# CLITK = Command Line ITK
-cmake_minimum_required(VERSION 2.4)
-cmake_policy(VERSION 2.4)
+cmake_minimum_required(VERSION 2.8)
+cmake_policy(VERSION 2.8)
if(COMMAND cmake_policy)
cmake_policy(SET CMP0003 NEW)
endif(COMMAND cmake_policy)
PROJECT(clitk)
#=========================================================
-#IF(CMAKE_COMPILER_IS_GNUCXX)
-# SET(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -march=native")
-# SET(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} ")
-#ENDIF(CMAKE_COMPILER_IS_GNUCXX)
-IF(MSVC)
- ADD_DEFINITIONS(-D_CRT_SECURE_NO_WARNINGS -D_CRT_NONSTDC_NO_DEPRECATE -D_SCL_SECURE_NO_WARNINGS)
-ENDIF(MSVC)
+
+#=========================================================
+INCLUDE(cmake/common.cmake)
+#=========================================================
+
+#=========================================================
+#Support for the CTest dashboard testing system
+OPTION(BUILD_TESTING "Build the testing tree" OFF)
+IF (BUILD_TESTING)
+ OPTION(CLITK_BUILD_TESTING "Test ITK" ON)
+ INCLUDE(CTest)
+ENDIF(BUILD_TESTING)
+#=========================================================
+
#=========================================================
# Find ITK (required)
FIND_PACKAGE(ITK)
IF(ITK_FOUND)
- INCLUDE(${ITK_USE_FILE})
- LINK_LIBRARIES(ITKBasicFilters)
+ INCLUDE("${ITK_USE_FILE}")
ELSE(ITK_FOUND)
- MESSAGE(FATAL_ERROR
- "Cannot build without ITK. Please set ITK_DIR.")
+ MESSAGE(FATAL_ERROR "Cannot build without ITK. Please set ITK_DIR.")
ENDIF(ITK_FOUND)
+#=========================================================
#=========================================================
-IF(CLITK_BUILD_VV)
- FIND_PACKAGE(VTK)
- IF(VTK_FOUND)
- INCLUDE(${VTK_USE_FILE})
- LINK_LIBRARIES (
- vtkCommon
- vtkRendering
- vtkIO
- vtkFiltering
- vtkGraphics
- vtkWidgets
- vtkImaging
- )
- ELSE(VTK_FOUND)
- MESSAGE(FATAL_ERROR
- "Please set VTK_DIR.")
- ENDIF(VTK_FOUND)
-ENDIF(CLITK_BUILD_VV)
+# Find VTK (required)
+FIND_PACKAGE(VTK REQUIRED)
+IF(VTK_FOUND)
+ INCLUDE("${VTK_USE_FILE}")
+ELSE(VTK_FOUND)
+ MESSAGE(FATAL_ERROR "Please set VTK_DIR.")
+ENDIF(VTK_FOUND)
+#=========================================================
#=========================================================
-# Find gengetopt
-FIND_PATH(CLITK_GENGETOPT gengetopt)
-IF (CLITK_GENGETOPT STREQUAL "CLITK_GENGETOPT-NOTFOUND")
- MESSAGE("gengetopt not found, please install it (see http://www.gnu.org/software/gengetopt/gengetopt.html)")
-ENDIF (CLITK_GENGETOPT STREQUAL "CLITK_GENGETOPT-NOTFOUND")
+# Find gengetopt, will create a target exe if not found
+SET(CMAKE_MODULE_PATH "${PROJECT_SOURCE_DIR}/cmake" ${CMAKE_MODULE_PATH})
+FIND_PACKAGE(Gengetopt)
#=========================================================
#=========================================================
-INCLUDE(cmake/common.cmake)
+# Find libstatgrab is installed, add clitkMemoryUsage.cxx in the library
+FIND_LIBRARY(LIBSTATGRAB NAMES statgrab PATHS)
+IF (${LIBSTATGRAB} MATCHES "LIBSTATGRAB-NOTFOUND")
+# MESSAGE("Install libstatgrab (http://www.i-scream.org/libstatgrab/) for memory usage information")
+ SET(CLITK_MEMORY_INFO OFF)
+ELSE (${LIBSTATGRAB} MATCHES "LIBSTATGRAB-NOTFOUND")
+ SET(CLITK_MEMORY_INFO ON)
+ENDIF (${LIBSTATGRAB} MATCHES "LIBSTATGRAB-NOTFOUND")
+#=========================================================
+
+#=========================================================
+# If the user choose to build documentation, then search for Doxygen executables.
+OPTION(BUILD_DOXYGEN "Build Doxygen Documentation" OFF)
+IF(BUILD_DOXYGEN)
+ FIND_PACKAGE(Doxygen)
+ ADD_SUBDIRECTORY(Doxygen)
+ENDIF(BUILD_DOXYGEN)
#=========================================================
#=========================================================
#=========================================================
#=========================================================
-OPTION(CLITK_BUILD_VV "Build vv the 4D visualizer (requires VTK and QT)" ON)
-OPTION(CLITK_BUILD_TOOLS "Build command-line tools" OFF)
-OPTION(CLITK_EXPERIMENTAL "Enable experimental software and features" OFF)
+# Remove some MS Visual c++ flags
+IF(MSVC)
+ ADD_DEFINITIONS(-D_CRT_SECURE_NO_WARNINGS -D_CRT_NONSTDC_NO_DEPRECATE -D_SCL_SECURE_NO_WARNINGS)
+ENDIF(MSVC)
#=========================================================
-include_directories(itk filters ${PROJECT_BINARY_DIR})
-
#=========================================================
-add_subdirectory(common)
-add_subdirectory(filters)
+INCLUDE_DIRECTORIES(itk filters segmentation registration tools ${PROJECT_BINARY_DIR})
+
+# Select what is compiled
+ADD_SUBDIRECTORY(common)
+ADD_SUBDIRECTORY(tools)
+ADD_SUBDIRECTORY(segmentation)
+ADD_SUBDIRECTORY(registration)
+
+# Compilation options
+OPTION(CLITK_EXPERIMENTAL "Enable experimental software and features" OFF)
+OPTION(CLITK_BUILD_TOOLS "Build command-line tools" OFF)
+OPTION(CLITK_BUILD_SEGMENTATION "Build command-line segmentation tools" OFF)
+OPTION(CLITK_BUILD_REGISTRATION "Build command-line registration tools" OFF)
+
+OPTION(CLITK_BUILD_VV "Build vv the 4D visualizer (requires VTK and QT)" ON)
IF (CLITK_BUILD_VV)
- add_subdirectory(vv)
+ ADD_SUBDIRECTORY(vv)
ENDIF(CLITK_BUILD_VV)
-IF (CLITK_BUILD_TOOLS)
- add_subdirectory(tools)
-ENDIF(CLITK_BUILD_TOOLS)
#=========================================================
+# Build test when vv has been compiled
+IF(BUILD_TESTING)
+ ADD_SUBDIRECTORY(tests)
+ENDIF(BUILD_TESTING)
+
+#=========================================================
+# Install scripts when running make install
+SET(SCRIPTS
+ scripts/calculate_motion_amplitude.sh
+ scripts/midp_common.sh
+ scripts/registration.sh
+ scripts/create_midP.sh
+ scripts/create_midP-2.0.sh
+ scripts/create_mhd_4D.sh
+ scripts/create_mhd_4D_pattern.sh
+ scripts/create_midP_masks.sh
+ scripts/create_midP_masks-2.0.sh
+ scripts/pts_to_landmarks.sh
+ scripts/create_mhd_3D.sh
+ scripts/dicom_info.sh
+)
+
+INSTALL (FILES ${SCRIPTS} DESTINATION bin PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_EXECUTE WORLD_EXECUTE)
+
git://git.creatis.insa-lyon.fr / clitk.git / blobdiff