remove tools (now in tests_dav)

[clitk.git] / segmentation / CMakeLists.txt

diff --git a/segmentation/CMakeLists.txt b/segmentation/CMakeLists.txt
index dfa795bd811a85a55e153e87de3850b05a53d100..f6c4096ab48d538dddf93afbaebb974502a3ddb2 100644 (file)
--- a/segmentation/CMakeLists.txt
+++ b/segmentation/CMakeLists.txt
@@ -1,51 +1,72 @@
 #=========================================================
 
-INCLUDE(${PROJECT_SOURCE_DIR}/cmake/common.cmake)
+# Add Libraries used in vv and clitk to avoid recompilation
+FOREACH(clitkTool clitkExtractLung clitkExtractPatient)
+    WRAP_GGO(${clitkTool}_GGO_C ${clitkTool}.ggo)
+    SET(GGO_C_FILES ${GGO_C_FILES} ${${clitkTool}_GGO_C})
+ENDFOREACH(clitkTool)
+ADD_LIBRARY(clitkSegmentationGgoLib
+            clitkFilterWithAnatomicalFeatureDatabaseManagement.cxx
+            clitkAnatomicalFeatureDatabase.cxx
+            ${GGO_C_FILES})
 
 #=========================================================
 
-SET( CMAKE_VERBOSE_MAKEFILE off)
+IF(CLITK_BUILD_SEGMENTATION)
+    WRAP_GGO(clitkConnectedComponentLabeling_GGO_C clitkConnectedComponentLabeling.ggo)
+    ADD_EXECUTABLE(clitkConnectedComponentLabeling clitkConnectedComponentLabeling.cxx ${clitkConnectedComponentLabeling_GGO_C})
+    TARGET_LINK_LIBRARIES(clitkConnectedComponentLabeling clitkCommon ${ITK_LIBRARIES})
+    SET(SEGMENTATION_INSTALL clitkConnectedComponentLabeling)
 
-#=========================================================
+    ADD_EXECUTABLE(clitkExtractPatient clitkExtractPatient.cxx ${clitkExtractPatient_GGO_C})
+    TARGET_LINK_LIBRARIES(clitkExtractPatient clitkCommon ${ITK_LIBRARIES} clitkSegmentationGgoLib)
+    SET(SEGMENTATION_INSTALL ${SEGMENTATION_INSTALL} clitkExtractPatient)
 
-WRAP_GGO(clitkSegmentationFilters_GGO_C
-  clitkFillMask.ggo
-  clitkConnectedComponentLabeling.ggo
-  clitkExtractLung.ggo
-  clitkExtractPatient.ggo
-  clitkExtractBones.ggo
-  clitkExtractMediastinum.ggo
-  clitkExtractLymphStations.ggo
-)
+    ADD_EXECUTABLE(clitkExtractLung clitkExtractLung.cxx  ${clitkExtractLung_GGO_C})
+    TARGET_LINK_LIBRARIES(clitkExtractLung clitkSegmentationGgoLib clitkCommon ${ITK_LIBRARIES})
+    SET(SEGMENTATION_INSTALL ${SEGMENTATION_INSTALL} clitkExtractLung)
 
-SET(clitkSegmentationFilters_SRC
-  ${clitkSegmentationFilters_GGO_C}
-)  
+    WRAP_GGO(clitkExtractBones_GGO_C clitkExtractBones.ggo)
+    ADD_EXECUTABLE(clitkExtractBones clitkExtractBones.cxx ${clitkExtractBones_GGO_C})
+    TARGET_LINK_LIBRARIES(clitkExtractBones clitkCommon ${ITK_LIBRARIES} clitkSegmentationGgoLib)
+    SET(SEGMENTATION_INSTALL ${SEGMENTATION_INSTALL} clitkExtractBones)
 
-ADD_LIBRARY(clitkSegmentationFilters STATIC ${clitkSegmentationFilters_SRC})
+ 
+    WRAP_GGO(clitkRelativePosition_GGO_C ../tools/clitkRelativePosition.ggo)
 
-ADD_EXECUTABLE(clitkTestFilter clitkTestFilter.cxx clitkTestFilter_ggo.c)
-TARGET_LINK_LIBRARIES(clitkTestFilter clitkCommon ITKIO clitkSegmentationFilters ITKStatistics)
+    WRAP_GGO(clitkExtractLymphStations_GGO_C clitkExtractLymphStations.ggo)
+    ADD_EXECUTABLE(clitkExtractLymphStations clitkExtractLymphStations.cxx clitkFilterWithAnatomicalFeatureDatabaseManagement.cxx ${clitkExtractLymphStations_GGO_C} ${clitkRelativePosition_GGO_C})
+    TARGET_LINK_LIBRARIES(clitkExtractLymphStations clitkSegmentationGgoLib clitkCommon vtkHybrid)
+    SET(SEGMENTATION_INSTALL ${SEGMENTATION_INSTALL} clitkExtractLymphStations)
 
-## Segmentation part
+     WRAP_GGO(clitkMorphoMath_GGO_C clitkMorphoMath.ggo)
+    ADD_EXECUTABLE(clitkMorphoMath clitkMorphoMath.cxx ${clitkMorphoMath_GGO_C})
+    TARGET_LINK_LIBRARIES(clitkMorphoMath clitkCommon ${ITK_LIBRARIES})
+    SET(SEGMENTATION_INSTALL ${SEGMENTATION_INSTALL} clitkMorphoMath)
 
-ADD_EXECUTABLE(clitkConnectedComponentLabeling clitkConnectedComponentLabeling.cxx)
-TARGET_LINK_LIBRARIES(clitkConnectedComponentLabeling clitkCommon ITKIO ITKStatistics clitkSegmentationFilters)
+    WRAP_GGO(clitkDecomposeAndReconstruct_GGO_C clitkDecomposeAndReconstruct.ggo)
+    ADD_EXECUTABLE(clitkDecomposeAndReconstruct clitkDecomposeAndReconstruct.cxx clitkDecomposeAndReconstructGenericFilter.cxx ${clitkDecomposeAndReconstruct_GGO_C})
+    TARGET_LINK_LIBRARIES(clitkDecomposeAndReconstruct clitkCommon ${ITK_LIBRARIES})
+    SET(SEGMENTATION_INSTALL ${SEGMENTATION_INSTALL} clitkDecomposeAndReconstruct)
 
-ADD_EXECUTABLE(clitkFillMask clitkFillMask.cxx clitkFillMaskGenericFilter.cxx)
-TARGET_LINK_LIBRARIES(clitkFillMask clitkCommon ITKIO ITKStatistics clitkSegmentationFilters)
+    WRAP_GGO(clitkMotionMask_GGO_C clitkMotionMask.ggo)
+    ADD_EXECUTABLE(clitkMotionMask clitkMotionMask.cxx clitkMotionMaskGenericFilter.cxx ${clitkMotionMask_GGO_C})
+    TARGET_LINK_LIBRARIES(clitkMotionMask clitkCommon ${ITK_LIBRARIES})
+    SET(SEGMENTATION_INSTALL ${SEGMENTATION_INSTALL} clitkMotionMask)
 
-ADD_EXECUTABLE(clitkExtractPatient clitkExtractPatient.cxx)
-TARGET_LINK_LIBRARIES(clitkExtractPatient clitkCommon ITKIO ITKStatistics clitkSegmentationFilters)
+    # WRAP_GGO(clitkTestFilter_GGO_C clitkTestFilter.ggo)
+    # ADD_EXECUTABLE(clitkTestFilter clitkTestFilter.cxx ${clitkTestFilter_GGO_C})
+    # TARGET_LINK_LIBRARIES(clitkTestFilter clitkSegmentationGgoLib clitkCommon vtkHybrid)
+    # SET(SEGMENTATION_INSTALL ${SEGMENTATION_INSTALL} clitkTestFilter)
+    
+    SET_TARGET_PROPERTIES(${SEGMENTATION_INSTALL} PROPERTIES INSTALL_RPATH "${VTK_DIR}:${ITK_DIR}" )  
+    INSTALL (TARGETS ${SEGMENTATION_INSTALL} DESTINATION bin PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_EXECUTE WORLD_EXECUTE)
 
-ADD_EXECUTABLE(clitkExtractLung clitkExtractLung.cxx)
-TARGET_LINK_LIBRARIES(clitkExtractLung clitkCommon ITKIO ITKStatistics clitkSegmentationFilters)
+ENDIF(CLITK_BUILD_SEGMENTATION)
 
-ADD_EXECUTABLE(clitkExtractBones clitkExtractBones.cxx)
-TARGET_LINK_LIBRARIES(clitkExtractBones clitkCommon ITKIO ITKStatistics clitkSegmentationFilters)
+# ADD_EXECUTABLE(ScalarImageMarkovRandomField1 ScalarImageMarkovRandomField1.cxx)
+# TARGET_LINK_LIBRARIES(ScalarImageMarkovRandomField1 clitkCommon ${ITK_LIBRARIES} ITKStatistics)
+# ADD_EXECUTABLE(ScalarImageKmeansClassifier ScalarImageKmeansClassifier.cxx)
+# TARGET_LINK_LIBRARIES(ScalarImageKmeansClassifier clitkCommon ${ITK_LIBRARIES} ITKStatistics)
 
-ADD_EXECUTABLE(clitkExtractMediastinum clitkExtractMediastinum.cxx)
-TARGET_LINK_LIBRARIES(clitkExtractMediastinum clitkCommon ITKIO ITKStatistics clitkSegmentationFilters)
 
-ADD_EXECUTABLE(clitkExtractLymphStations clitkExtractLymphStations.cxx)
-TARGET_LINK_LIBRARIES(clitkExtractLymphStations clitkCommon ITKIO ITKStatistics clitkSegmentationFilters)