-#include "itkImage.h"
-#include "itkImageFileReader.h"
-#include "itkImageFileWriter.h"
-#include "itkConstantPadImageFilter.h"
#include "clitkCommon.h"
#include "clitkPadImage_ggo.h"
-#include <string>
-#include "itkMath.h"
+#include "clitkPadImageGenericFilter.h"
-enum
-{
- ERR_SUCCESS = 0,
- ERR_NOT_SAME_SPACING = -1,
- ERR_NOT_LIKE_LARGER = -2
-};
-
-typedef unsigned int DimType;
-
-template <class ImageType, class PadBoundType, DimType dim>
-int pad_like(typename ImageType::Pointer input, const std::string& likeFile, PadBoundType* padLower, PadBoundType* padUpper)
-{
- typedef typename ImageType::SpacingType SpacingType;
- typedef typename ImageType::RegionType RegionType;
- typedef typename ImageType::SizeType SizeType;
- typedef typename ImageType::IndexType IndexType;
- typedef typename ImageType::PointType PointType;
- typedef typename ImageType::PointValueType PointValueType;
-
- typedef itk::ImageFileReader<ImageType> ImageReaderType;
- typename ImageReaderType::Pointer reader = ImageReaderType::New();
- reader->SetFileName(likeFile);
- reader->Update();
-
- typename ImageType::Pointer like_image = reader->GetOutput();
-
- SpacingType spacing = input->GetSpacing(), like_spacing = like_image->GetSpacing();
- if (spacing != like_spacing) {
- std::cerr << "Like-image must have same spacing as input: " << spacing << " " << like_spacing << std::endl;
- return ERR_NOT_SAME_SPACING;
- }
-
- SizeType size = input->GetLargestPossibleRegion().GetSize(), like_size = like_image->GetLargestPossibleRegion().GetSize();
- PointType origin = input->GetOrigin(), like_origin = like_image->GetOrigin();
-
- PointType lower_bound, like_lower_bound;
- PointType upper_bound, like_upper_bound;
- PointValueType auxl = 0, auxu = 0;
- for (DimType i = 0; i < dim; i++) {
- lower_bound[i] = origin[i];
- like_lower_bound[i] = like_origin[i];
- auxl = itk::Math::Round<PointValueType>(((lower_bound[i] - like_lower_bound[i])/spacing[i]));
-
- upper_bound[i] = (lower_bound[i] + size[i]*spacing[i]);
- like_upper_bound[i] = (like_lower_bound[i] + like_size[i]*spacing[i]);
- auxu = itk::Math::Round<PointValueType>(((like_upper_bound[i] - upper_bound[i])/spacing[i]));
-
- if (auxl < 0 || auxu < 0) {
- std::cerr << "Like-image's bounding box must be larger than input's" << std::endl;
- return ERR_NOT_LIKE_LARGER;
- }
-
- padLower[i] = (PadBoundType)auxl;
- padUpper[i] = (PadBoundType)auxu;
- }
-
- return ERR_SUCCESS;
-}
+// template <class ImageType, class PadBoundType, unsigned int dim>
+// int pad_like(typename ImageType::Pointer input, const std::string& likeFile, PadBoundType* padLower, PadBoundType* padUpper)
+// {
+// typedef typename ImageType::SpacingType SpacingType;
+// typedef typename ImageType::RegionType RegionType;
+// typedef typename ImageType::SizeType SizeType;
+// typedef typename ImageType::IndexType IndexType;
+// typedef typename ImageType::PointType PointType;
+// typedef typename ImageType::PointValueType PointValueType;
+//
+// typedef itk::ImageFileReader<ImageType> ImageReaderType;
+// typename ImageReaderType::Pointer reader = ImageReaderType::New();
+// reader->SetFileName(likeFile);
+// reader->Update();
+//
+// typename ImageType::Pointer like_image = reader->GetOutput();
+//
+// SpacingType spacing = input->GetSpacing(), like_spacing = like_image->GetSpacing();
+// if (spacing != like_spacing) {
+// std::cerr << "Like-image must have same spacing as input: " << spacing << " " << like_spacing << std::endl;
+// return ERR_NOT_SAME_SPACING;
+// }
+//
+// SizeType size = input->GetLargestPossibleRegion().GetSize(), like_size = like_image->GetLargestPossibleRegion().GetSize();
+// PointType origin = input->GetOrigin(), like_origin = like_image->GetOrigin();
+//
+// PointType lower_bound, like_lower_bound;
+// PointType upper_bound, like_upper_bound;
+// PointValueType auxl = 0, auxu = 0;
+// for (unsigned int i = 0; i < dim; i++) {
+// lower_bound[i] = origin[i];
+// like_lower_bound[i] = like_origin[i];
+// auxl = itk::Math::Round<PointValueType>(((lower_bound[i] - like_lower_bound[i])/spacing[i]));
+//
+// upper_bound[i] = (lower_bound[i] + size[i]*spacing[i]);
+// like_upper_bound[i] = (like_lower_bound[i] + like_size[i]*spacing[i]);
+// auxu = itk::Math::Round<PointValueType>(((like_upper_bound[i] - upper_bound[i])/spacing[i]));
+//
+// if (auxl < 0 || auxu < 0) {
+// std::cerr << "Like-image's bounding box must be larger than input's" << std::endl;
+// return ERR_NOT_LIKE_LARGER;
+// }
+//
+// padLower[i] = (PadBoundType)auxl;
+// padUpper[i] = (PadBoundType)auxu;
+// }
+//
+// return ERR_SUCCESS;
+// }
int main(int argc, char** argv)
{
- const DimType dim = 3;
+/* const DimType dim = 3;
typedef short PixelType;
typedef itk::Image<PixelType, dim> ImageType;
typedef itk::ImageFileReader<ImageType> ImageReaderType;
typedef itk::ImageFileWriter<ImageType> ImageWriterType;
typedef itk::ConstantPadImageFilter<ImageType, ImageType> PadFilterType;
- typedef PadFilterType::SizeValueType PadBoundType;
+ typedef PadFilterType::SizeValueType PadBoundType;*/
GGO(clitkPadImage, args_info);
-
- ImageReaderType::Pointer reader = ImageReaderType::New();
- reader->SetFileName(args_info.input_arg);
- reader->Update();
-
- PadBoundType pad_lower[dim], pad_upper[dim];
- ImageType::Pointer input = reader->GetOutput();
- if (args_info.like_given) {
- int err = pad_like<ImageType, PadBoundType, dim>(input, args_info.like_arg, pad_lower, pad_upper);
- if (err) {
- std::cerr << "Error processing like image." << std::endl;
- return err;
- }
- }
- else {
- for (DimType i = 0; i < dim; i++) {
- pad_lower[i] = args_info.lower_arg[i];
- pad_upper[i] = args_info.upper_arg[i];
- }
+
+ // Filter
+ typedef clitk::PadImageGenericFilter FilterType;
+ FilterType::Pointer filter = FilterType::New();
+
+ filter->SetArgsInfo(args_info);
+
+ try {
+ filter->Update();
+ } catch(std::runtime_error e) {
+ std::cout << e.what() << std::endl;
}
- PadFilterType::Pointer filter = PadFilterType::New();
- filter->SetPadLowerBound(pad_lower);
- filter->SetPadUpperBound(pad_upper);
- filter->SetInput(input);
- filter->SetConstant(args_info.value_arg);
- filter->Update();
-
- ImageType::Pointer output = filter->GetOutput();
- ImageWriterType::Pointer writer = ImageWriterType::New();
- writer->SetInput(output);
- writer->SetFileName(args_info.output_arg);
- writer->Update();
+// ImageReaderType::Pointer reader = ImageReaderType::New();
+// reader->SetFileName(args_info.input_arg);
+// reader->Update();
+//
+// PadBoundType pad_lower[dim], pad_upper[dim];
+// ImageType::Pointer input = reader->GetOutput();
+// if (args_info.like_given) {
+// int err = pad_like<ImageType, PadBoundType, dim>(input, args_info.like_arg, pad_lower, pad_upper);
+// if (err) {
+// std::cerr << "Error processing like image." << std::endl;
+// return err;
+// }
+// }
+// else {
+// for (DimType i = 0; i < dim; i++) {
+// pad_lower[i] = args_info.lower_arg[i];
+// pad_upper[i] = args_info.upper_arg[i];
+// }
+// }
+//
+// PadFilterType::Pointer filter = PadFilterType::New();
+// filter->SetPadLowerBound(pad_lower);
+// filter->SetPadUpperBound(pad_upper);
+// filter->SetInput(input);
+// filter->SetConstant(args_info.value_arg);
+// filter->Update();
+//
+// ImageType::Pointer output = filter->GetOutput();
+// ImageWriterType::Pointer writer = ImageWriterType::New();
+// writer->SetInput(output);
+// writer->SetFileName(args_info.output_arg);
+// writer->Update();
- return ERR_SUCCESS;
+ return EXIT_SUCCESS;
}
git://git.creatis.insa-lyon.fr / clitk.git / blobdiff