]> Creatis software - clitk.git/blobdiff - vv/vv.cxx
dicom structure in cmd line
[clitk.git] / vv / vv.cxx
index 71974f1e6124dea74f279b35825a76edf7b369c2..f3011e687e4e1fd32d77ac89de32ae8fb278cb03 100644 (file)
--- a/vv/vv.cxx
+++ b/vv/vv.cxx
@@ -3,7 +3,7 @@
 
   Authors belong to:
   - University of LYON              http://www.universite-lyon.fr/
-  - Léon Bérard cancer center       http://oncora1.lyon.fnclcc.fr
+  - Léon Bérard cancer center       http://www.centreleonberard.fr
   - CREATIS CNRS laboratory         http://www.creatis.insa-lyon.fr
 
   This software is distributed WITHOUT ANY WARRANTY; without even
 
   - BSD        See included LICENSE.txt file
   - CeCILL-B   http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
-======================================================================-====*/
+===========================================================================**/
 #include <utility>
 #include <cassert>
+#include <ctime>
+#include <string>
+#include <ostream>
+#include <sstream>
 #include <QApplication>
 #include <QPixmap>
 #include <QSplashScreen>
 #include <QTimer>
 #include <QDesktopWidget>
+#include <QDir>
 
 #include "clitkIO.h"
 #include "vvMainWindow.h"
-#include "vvConstants.h"
+#include "vvReadState.h"
+#include "vvToolsList.h"
+#include <vtkFileOutputWindow.h>
+#include <vtkSmartPointer.h>
+#include <itkFileOutputWindow.h>
+#include <itkSmartPointer.h>
+#include <itksys/SystemTools.hxx>
+
+#include <sys/types.h>
+#include <sys/stat.h>
+#include <errno.h>
 
 void load_image_first_error()
 {
@@ -33,20 +48,52 @@ void load_image_first_error()
   exit(1);
 }
 
+std::string create_timed_string()
+{
+  time_t t;
+  time(&t);
+
+  struct tm* pt = localtime(&t);
+
+  const int size = 64;
+  char st[size];
+  strftime(st, size, "%Y%m%d-%H%M%S", pt);
+
+  return st;
+}
+
 //------------------------------------------------------------------------------
+#ifdef _WIN32
+int CALLBACK WinMain(HINSTANCE hInstance, HINSTANCE prevInstance, LPSTR lpCmdLine, int nShowCmd)
+{
+  int argc = __argc;
+  char **argv = __argv;
+#else
 int main( int argc, char** argv )
 {
+#endif
+
   CLITK_INIT;
 
   QApplication app( argc, argv );
   Q_INIT_RESOURCE(vvIcons);
-  //QPixmap pixmap(":/splashscreen.PNG");
-  QSplashScreen *splash = new QSplashScreen(QPixmap(QString::fromUtf8(":/new/prefix1/splashscreen.PNG")));
-  /*splash->showMessage("VV 1.0 developped by Léon Bérard c`ancer center http://oncora1.lyon.fnclcc.fr and CREATIS-LRMN http://www.creatis.insa-lyon.fr",(Qt::AlignRight | Qt::AlignBottom));*/
-  //  splash->show();
-  QTimer::singleShot(2000, splash, SLOT(close()));
-  while (!splash->isHidden())
-    app.processEvents();
+  
+  // 
+  // ATTENTION: Rômulo Pinho - 05/08/2011
+  // Forcing the locale of the application is necessary
+  // because QT initialization changes it to the locale
+  // of the language of the system. This can cause 
+  // inconsistencies when, e.g., reading float values
+  // from DICOM fields with gdcm, since the decimal
+  // point may be changed for a comma (as in French).
+  // In practice, functions such as scanf and its
+  // variations are directly affected.
+  // https://bugreports.qt.nokia.com//browse/QTBUG-15247?page=com.atlassian.jira.plugin.system.issuetabpanels%253Achangehistory-tabpanel
+  //
+#ifndef _WIN32
+  std::string old_locale = setlocale(LC_NUMERIC, NULL);
+  setlocale(LC_NUMERIC, "POSIX");
+#endif
 
   vvMainWindow window;
 
@@ -60,16 +107,18 @@ int main( int argc, char** argv )
   window.show();
 
   std::vector<std::string> sequence_filenames;
-  enum {P_NORMAL,P_SEQUENCE};
+  enum {P_NORMAL,P_SEQUENCE,P_WINDOW,P_LEVEL};
   int parse_mode=P_NORMAL;
   int n_image_loaded=0;
+  std::string win(""), lev("");
 
+       bool link_images = false;
   if (argc >1) {
     for (int i = 1; i < argc; i++) {
       std::string current = argv[i];
       if (!current.compare(0,2,"--")) { //We are parsing an option
         if (parse_mode == P_SEQUENCE) {//First finish the current sequence
-          window.LoadImages(sequence_filenames,MERGEDWITHTIME);
+          window.LoadImages(sequence_filenames, vvImageReader::MERGEDWITHTIME);
           sequence_filenames.clear();
           parse_mode=P_NORMAL;
         }
@@ -77,42 +126,101 @@ int main( int argc, char** argv )
           if (!n_image_loaded) load_image_first_error();
           window.AddField(argv[i+1],n_image_loaded-1);
           i++; //skip vf name
-        } 
-        else if (current=="--overlay") {
-            if (!n_image_loaded) load_image_first_error();
-            window.AddOverlayImage(n_image_loaded-1,argv[i+1]);
-            i++; //skip overlay name
-          } 
-        else if (current=="--roi") {
-            if (!n_image_loaded) load_image_first_error();
-            window.AddROI(n_image_loaded-1,argv[i+1]);
-            i++; //skip roi name
-          }
-        else if (current=="--fusion") {
-            if (!n_image_loaded) load_image_first_error();
-            window.AddFusionImage(n_image_loaded-1,argv[i+1]);
-            i++; //skip fusion name
-          }
-        else if (current == "--sequence") {
+        } else if (current=="--overlay") {
+          if (!n_image_loaded) load_image_first_error();
+          window.AddOverlayImage(n_image_loaded-1,argv[i+1]);
+          i++; //skip overlay name
+        } else if (current=="--roi") {
+          if (!n_image_loaded) load_image_first_error();
+          window.AddROI(n_image_loaded-1,argv[i+1]);
+          i++; //skip roi name
+        } else if (current=="--contour") {
+          if (!n_image_loaded) load_image_first_error();
+          window.AddDCStructContour(n_image_loaded-1,argv[i+1]);
+          i++; //skip roi name
+        } else if (current=="--fusion") {
+          if (!n_image_loaded) load_image_first_error();
+          window.AddFusionImage(n_image_loaded-1,argv[i+1]);
+          i++; //skip fusion name
+        else if (current == "--sequence") {
           n_image_loaded++; //count only one for the sequence
-          parse_mode=P_SEQUENCE; }
-      }
-      else if (parse_mode == P_SEQUENCE)
+          parse_mode=P_SEQUENCE;
+        } else if (current == "--window") {
+          parse_mode=P_WINDOW;
+        } else if (current == "--level") {
+          parse_mode=P_LEVEL;
+        } else if (current == "--linkall") {
+                                       link_images = true;
+                               }
+                               else if (current == "--log") {
+          std::string log_dir = QDir::tempPath().toStdString() + std::string("/vv-log");
+
+          if(itksys::SystemTools::FileExists(log_dir.c_str()) &&
+              !itksys::SystemTools::FileIsDirectory(log_dir.c_str())) {
+            std::cerr << "Error creating log directory, file exists and is not a directory." << std::endl;
+            exit(1);
+          } else if(!itksys::SystemTools::MakeDirectory(log_dir.c_str())) {
+            std::cerr << "Error creating log directory." << std::endl;
+            exit(1);
+          }
+
+          std::string log_file = log_dir + "/" + create_timed_string() + ".log";
+
+          itk::SmartPointer<itk::FileOutputWindow> itk_log = itk::FileOutputWindow::New();
+          itk_log->SetFileName(log_file.c_str());
+          itk_log->FlushOn();
+          itk_log->AppendOn();
+          itk::OutputWindow::SetInstance(itk_log);
+
+          vtkSmartPointer<vtkFileOutputWindow> vtk_log = vtkFileOutputWindow::New();
+          vtk_log->SetFileName(log_file.c_str());
+          vtk_log->FlushOn();
+          vtk_log->AppendOn();
+          vtkOutputWindow::SetInstance(vtk_log);
+        } else if (current == "--state") {
+          //window.ReadSavedStateFile(argv[i+1]);
+          vvReadState read_state;
+          read_state.Run(&window, argv[i+1]);
+          n_image_loaded += read_state.GetNumberOfImages();
+          i++;
+        }
+        
+      } else if (parse_mode == P_SEQUENCE) {
         sequence_filenames.push_back(current);
-      else {
-        DD(current);
-        std::vector<std::string> image; image.push_back(current);
-        window.LoadImages(image,IMAGE);
+      } else if (parse_mode == P_WINDOW) {
+        win=current;
+        parse_mode=P_NORMAL;
+      } else if (parse_mode == P_LEVEL) {
+        lev=current;
+        parse_mode=P_NORMAL;
+      } else {
+        std::vector<std::string> image;
+        image.push_back(current);
+        window.LoadImages(image, vvImageReader::IMAGE);
         n_image_loaded++;
       }
     }
-    if (parse_mode == P_SEQUENCE) {//Finish any current sequence
-      window.LoadImages(sequence_filenames,MERGEDWITHTIME);
+    if (parse_mode == P_SEQUENCE) { //Finish any current sequence
+      window.LoadImages(sequence_filenames, vvImageReader::MERGEDWITHTIME);
       sequence_filenames.clear();
       parse_mode=P_NORMAL;
     }
+  }
 
+  if(win!="" && lev!="") {
+    window.SetWindowLevel(atof(win.c_str()), atof(lev.c_str()));
+    window.ApplyWindowLevelToAllImages();
   }
 
-  return app.exec();
+       if (link_images)
+               window.LinkAllImages();
+
+  int ret = app.exec();
+  
+#ifndef _WIN32
+  // restoring the locale, just to be clean...
+  setlocale(LC_NUMERIC, old_locale.c_str());
+#endif
+
+  return ret;
 }