#include "vvMesh.h"
#include "vvStructSelector.h"
#include "vvMeshReader.h"
+#include "vvSaveState.h"
+#include "vvReadState.h"
#include "clitkConfiguration.h"
// ITK include
connect(actionSave_image,SIGNAL(triggered()),this,SLOT(SaveAs()));
contextActions.push_back(actionSave_image);
+ QAction* actionSave_state = contextMenu.addAction(QIcon(QString::fromUtf8(":/common/icons/filesave.png")),
+ tr("Save Current State"));
+ connect(actionSave_state,SIGNAL(triggered()),this,SLOT(SaveCurrentState()));
+ contextActions.push_back(actionSave_state);
+
+ QAction* actionRead_state = contextMenu.addAction(QIcon(QString::fromUtf8(":/common/icons/filesave.png")),
+ tr("Read Saved State"));
+ connect(actionRead_state,SIGNAL(triggered()),this,SLOT(ReadSavedState()));
+ contextActions.push_back(actionRead_state);
+
contextMenu.addSeparator();
contextMenu.addAction(actionAdd_VF_to_current_Image);
contextActions.push_back(actionAdd_VF_to_current_Image);
- QAction* actionAdd_Overlay_to_current_Image = menuOverlay->addAction(QIcon(QString::fromUtf8(":/common/icons/GPSup.png")),
- tr("Add overlay image to current image"));
- contextMenu.addAction(actionAdd_Overlay_to_current_Image);
- contextActions.push_back(actionAdd_Overlay_to_current_Image);
-
- connect(actionAdd_Overlay_to_current_Image,SIGNAL(triggered()), this,SLOT(SelectOverlayImage()));
+ //QAction* actionAdd_Overlay_to_current_Image = menuOverlay->addAction(QIcon(QString::fromUtf8(":/common/icons/GPSup.png")),
+ // tr("Add overlay image to current image"));
+ contextMenu.addAction(actionAdd_overlay_image_to_current_image);
+ contextActions.push_back(actionAdd_overlay_image_to_current_image);
contextMenu.addAction(actionAdd_fusion_image);
- connect(actionAdd_fusion_image,SIGNAL(triggered()),this,SLOT(SelectFusionImage()));
contextActions.push_back(actionAdd_fusion_image);
+ contextMenu.addSeparator();
+ QAction* actionResetMatrix = contextMenu.addAction(QIcon(QString::fromUtf8(":/common/icons/identity.png")),
+ tr("Reset transformation to identity"));
+ connect(actionResetMatrix, SIGNAL(triggered()), this,SLOT(ResetTransformationToIdentity()));
+
// TRIAL DS
/*
QMenu * m = new QMenu(menubar);
dicomSeriesSelector = new vvDicomSeriesSelector();
inverseButton->setEnabled(0);
- actionAdd_Overlay_to_current_Image->setEnabled(0);
+ actionAdd_overlay_image_to_current_image->setEnabled(0);
actionSave_As->setEnabled(0);
actionAdd_VF_to_current_Image->setEnabled(0);
actionAdd_fusion_image->setEnabled(0);
connect(actionOpen_Image_With_Time,SIGNAL(triggered()),this,SLOT(OpenImageWithTime()));
connect(actionMerge_images_as_n_dim_t, SIGNAL(triggered()), this, SLOT(MergeImagesWithTime()));
connect(actionSave_As,SIGNAL(triggered()),this,SLOT(SaveAs()));
+ connect(actionSave_current_state,SIGNAL(triggered()),this,SLOT(SaveCurrentState()));
+ connect(actionRead_saved_state,SIGNAL(triggered()),this,SLOT(ReadSavedState()));
connect(actionExit,SIGNAL(triggered()),this,SLOT(close()));
connect(actionAdd_VF_to_current_Image,SIGNAL(triggered()),this,SLOT(OpenField()));
- connect(actionNavigation_Help,SIGNAL(triggered()),this,SLOT(ShowHelpDialog()));
+ connect(actionAdd_fusion_image,SIGNAL(triggered()),this,SLOT(SelectFusionImage()));
+ connect(actionAdd_overlay_image_to_current_image,SIGNAL(triggered()), this,SLOT(SelectOverlayImage())); connect(actionNavigation_Help,SIGNAL(triggered()),this,SLOT(ShowHelpDialog()));
connect(actionDocumentation,SIGNAL(triggered()),this,SLOT(ShowDocumentation()));
connect(actionRegister_vv,SIGNAL(triggered()),this,SLOT(PopupRegisterForm()));
connect(actionNorth_West_Window,SIGNAL(triggered()),this,SLOT(SaveNOScreenshot()));
connect(actionSouth_East_Window,SIGNAL(triggered()),this,SLOT(SaveSEScreenshot()));
connect(actionSouth_West_Window,SIGNAL(triggered()),this,SLOT(SaveSOScreenshot()));
+ connect(actionSave_all_slices,SIGNAL(triggered()),this,SLOT(SaveScreenshotAllSlices()));
connect(DataTree,SIGNAL(itemSelectionChanged()),this,SLOT(ImageInfoChanged()));
connect(DataTree,SIGNAL(itemClicked(QTreeWidgetItem*, int)),this,
connect(linkPanel,SIGNAL(addLink(QString,QString)),this,SLOT(AddLink(QString,QString)));
connect(linkPanel,SIGNAL(removeLink(QString,QString)),this,SLOT(RemoveLink(QString,QString)));
connect(overlayPanel,SIGNAL(VFPropertyUpdated(int,int,int,int,double,double,double)),this,SLOT(SetVFProperty(int,int,int,int,double,double,double)));
- connect(overlayPanel,SIGNAL(OverlayPropertyUpdated(int)),this,SLOT(SetOverlayProperty(int)));
- connect(overlayPanel,SIGNAL(FusionPropertyUpdated(int,int,double,double)),
- this,SLOT(SetFusionProperty(int,int,double,double)));
+ connect(overlayPanel,SIGNAL(OverlayPropertyUpdated(int,int,double,double)),
+ this,SLOT(SetOverlayProperty(int,int,double,double)));
+ connect(overlayPanel,SIGNAL(FusionPropertyUpdated(int,int,int,double,double)),
+ this,SLOT(SetFusionProperty(int,int,int,double,double)));
connect(landmarksPanel,SIGNAL(UpdateRenderWindows()),this,SLOT(UpdateRenderWindows()));
playMode = 0;//pause
//------------------------------------------------------------------------------
-void vvMainWindow::OpenDCStructContour()
+void vvMainWindow::AddDCStructContour(int index, QString file)
{
- if (mSlicerManagers.size() > 0) {
- QString Extensions = "Dicom Files ( *.dcm RS*)";
- Extensions += ";;All Files (*)";
- QString file = QFileDialog::getOpenFileName(this,tr("Merge Images"),mInputPathName,Extensions);
- if (file.isNull())
- return;
- int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
vvMeshReader reader;
reader.SetFilename(file.toStdString());
vvStructSelector selector;
AddContour(index,*i,selector.PropagationEnabled());
QApplication::restoreOverrideCursor();
}
+}
+
+//------------------------------------------------------------------------------
+void vvMainWindow::OpenDCStructContour()
+{
+ if (mSlicerManagers.size() > 0) {
+ QString Extensions = "Dicom Files ( *.dcm RS*)";
+ Extensions += ";;All Files (*)";
+ QString file = QFileDialog::getOpenFileName(this,tr("Merge Images"),mInputPathName,Extensions);
+ if (file.isNull())
+ return;
+ int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
+ AddDCStructContour(index, file);
}
}
//------------------------------------------------------------------------------
item->setData(0,Qt::UserRole,files[i].c_str());
QFileInfo fileinfo(imageManager->GetFileName().c_str()); //Do not show the path
item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,fileinfo.fileName());
- item->setToolTip(COLUMN_IMAGE_NAME,fileinfo.absoluteFilePath());
+ item->setData(1,Qt::UserRole,tr("image"));
+ item->setToolTip(COLUMN_IMAGE_NAME, imageManager->GetListOfAbsoluteFilePathInOneString("image").c_str());
qApp->processEvents();
//Create the buttons for reload and close
this, SLOT(OverlayChanged(int,double,double)));
connect(mSlicerManagers.back(), SIGNAL(UpdateFusion(int, double)),
this, SLOT(FusionChanged(int,double)));
- connect(mSlicerManagers.back(), SIGNAL(UpdateWindows(int, int, int)),
- this,SLOT(WindowsChanged(int, int, int)));
- connect(mSlicerManagers.back(), SIGNAL(WindowLevelChanged(double, double,int, int)),
- this,SLOT(WindowLevelChanged(double, double, int, int)));
+ connect(mSlicerManagers.back(), SIGNAL(WindowLevelChanged()),
+ this,SLOT(WindowLevelChanged()));
connect(mSlicerManagers.back(), SIGNAL(UpdateSlice(int,int)),
this,SLOT(UpdateSlice(int,int)));
connect(mSlicerManagers.back(), SIGNAL(UpdateTSlice(int, int)),
actionSave_As->setEnabled(1);
actionAdd_VF_to_current_Image->setEnabled(1);
actionAdd_fusion_image->setEnabled(1);
+ actionAdd_overlay_image_to_current_image->setEnabled(1);
actionNorth_East_Window->setEnabled(1);
actionNorth_West_Window->setEnabled(1);
actionSouth_East_Window->setEnabled(1);
break;
}
}
- windowSpinBox->setValue(mSlicerManagers[index]->GetColorWindow());
- levelSpinBox->setValue(mSlicerManagers[index]->GetColorLevel());
- presetComboBox->setCurrentIndex(mSlicerManagers[index]->GetPreset());
- colorMapComboBox->setCurrentIndex(mSlicerManagers[index]->GetColorMap());
infoPanel->setFileName(image);
infoPanel->setDimension(dim);
break;
}
}
- windowSpinBox->setValue(mSlicerManagers[index]->GetColorWindow());
- levelSpinBox->setValue(mSlicerManagers[index]->GetColorLevel());
- presetComboBox->setCurrentIndex(mSlicerManagers[index]->GetPreset());
- colorMapComboBox->setCurrentIndex(mSlicerManagers[index]->GetColorMap());
+ WindowLevelChanged();
if (mSlicerManagers[index]->GetSlicer(0)->GetVF()) {
overlayPanel->getVFName(mSlicerManagers[index]->GetVFName().c_str());
}
if (mSlicerManagers[index]->GetSlicer(0)->GetOverlay()) {
overlayPanel->getOverlayName(mSlicerManagers[index]->GetOverlayName().c_str());
- overlayPanel->getOverlayProperty(mSlicerManagers[index]->GetOverlayColor());
} else {
overlayPanel->getOverlayName(mSlicerManagers[index]->GetOverlayName().c_str());
- overlayPanel->getOverlayProperty(-1);
}
+
if (mSlicerManagers[index]->GetSlicer(0)->GetFusion()) {
overlayPanel->getFusionName(mSlicerManagers[index]->GetFusionName().c_str());
- overlayPanel->getFusionProperty(mSlicerManagers[index]->GetFusionOpacity(),
- mSlicerManagers[index]->GetFusionColorMap(),
- mSlicerManagers[index]->GetFusionWindow(),
- mSlicerManagers[index]->GetFusionLevel());
} else {
overlayPanel->getFusionName(mSlicerManagers[index]->GetFusionName().c_str());
- overlayPanel->getFusionProperty(-1, -1,-1,-1);
}
}
}
//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
-void vvMainWindow::DisplayChanged(QTreeWidgetItem *clicked_item, int column)
+void vvMainWindow::DisplayChanged(QTreeWidgetItem *clickedItem, int column)
{
- int index = GetSlicerIndexFromItem(clicked_item);
if ( column >= COLUMN_CLOSE_IMAGE || column <= 0)
return;
+
+ // Get parent information (might be the same item)
+ int slicerManagerIndex = GetSlicerIndexFromItem(clickedItem);
+ QTreeWidgetItem* clickedParentItem = DataTree->topLevelItem(slicerManagerIndex);
+ vvSlicer* clickedSlicer = mSlicerManagers[slicerManagerIndex]->GetSlicer(column-1);
+
+ // Go over the complete item tree (only 2 levels, parents and children)
for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
- //Trick to avoid redoing twice the job for a key (sr)
- mSlicerManagers[i]->GetSlicer(column-1)->GetRenderWindow()-> GetInteractor()->SetKeySym("Crap");
-
- QTreeWidgetItem* current_row=DataTree->topLevelItem(i);
- if (DataTree->topLevelItem(index) == current_row) {
- vvSlicer* clicked_slicer=mSlicerManagers[i]->GetSlicer(column-1);
- if (current_row == clicked_item) {
- //If we just activated a slicer
- if (current_row->data(column,Qt::CheckStateRole).toInt() > 0) {
- mSlicerManagers[i]->UpdateSlicer(column-1,clicked_item->data(column,Qt::CheckStateRole).toInt());
- mSlicerManagers[i]->UpdateInfoOnCursorPosition(column-1);
- DisplaySliders(i,column-1);
- std::map<std::string,int> overlay_counts;
- for (int child = 0; child < current_row->childCount(); child++) {
- std::string overlay_type =
- current_row->child(child)->data(1,Qt::UserRole).toString().toStdString();
- overlay_counts[overlay_type]++;
- current_row->child(child)->setData(column,Qt::CheckStateRole,
- current_row->data(column,Qt::CheckStateRole));
- clicked_slicer->SetActorVisibility(overlay_type,overlay_counts[overlay_type]-1,true);
- }
- } else { //We don't allow simply desactivating a slicer
- clicked_item->setData(column,Qt::CheckStateRole,2);
- DisplayChanged(clicked_item, column);
- return;
- }
+ // Trick to avoid redoing twice the job for a key (sr)
+ mSlicerManagers[i]->GetSlicer(column-1)->GetRenderWindow()->GetInteractor()->SetKeySym("Crap");
+
+ QTreeWidgetItem* currentParentItem = DataTree->topLevelItem(i);
+ if(currentParentItem != clickedParentItem) {
+ // Not the branch of the clicked item, uncheck all
+
+ // Parent
+ currentParentItem->setData(column,Qt::CheckStateRole, 0);
+ mSlicerManagers[i]->UpdateSlicer(column-1, false);
+
+ // Children
+ for (int iChild = 0; iChild < currentParentItem->childCount(); iChild++) {
+ currentParentItem->child(iChild)->setData(column,Qt::CheckStateRole, 0);
}
- //if we clicked on the vector(or overlay) and not the image
- else {
- if (clicked_item->data(column,Qt::CheckStateRole).toInt()) {
- current_row->setData(column,Qt::CheckStateRole,2);
- mSlicerManagers[i]->UpdateSlicer(column-1,2);
- mSlicerManagers[i]->UpdateInfoOnCursorPosition(column-1);
- DisplaySliders(i,column-1);
- }
- int vis = clicked_item->data(column,Qt::CheckStateRole).toInt();
- std::string overlay_type = clicked_item->data(1,Qt::UserRole).toString().toStdString();
- int overlay_index=0;
- for (int child = 0; child < current_row->childCount(); child++) {
- if (current_row->child(child)->data(1,Qt::UserRole).toString().toStdString() == overlay_type)
- overlay_index++;
- if (current_row->child(child) == clicked_item) break;
- }
- clicked_slicer->SetActorVisibility(
- clicked_item->data(1,Qt::UserRole).toString().toStdString(), overlay_index-1,vis);
+ }
+ else {
+ // Branch of the clicked one: get check status from actor visibility in slicer
+ // and toggle the clicked one
+
+ // Parent
+ bool vis = clickedSlicer->GetActorVisibility("image", 0);
+ bool draw = clickedSlicer->GetRenderer()->GetDraw();
+
+ // Update slicer (after getting visibility)
+ mSlicerManagers[slicerManagerIndex]->UpdateSlicer(column-1, true);
+ mSlicerManagers[slicerManagerIndex]->UpdateInfoOnCursorPosition(column-1);
+ DisplaySliders(slicerManagerIndex, column-1);
+ if(clickedParentItem == clickedItem) {
+ // Toggle
+ vis = !draw || !vis;
}
- } else if (current_row->data(column,Qt::CheckStateRole).toInt() > 0) {
- current_row->setData(column,Qt::CheckStateRole,0);
- mSlicerManagers[i]->UpdateSlicer(column-1,0);
- std::map<std::string,int> overlay_counts;
- for (int child = 0; child < current_row->childCount(); child++) {
- std::string overlay_type =
- current_row->child(child)->data(1,Qt::UserRole).toString().toStdString();
- overlay_counts[overlay_type]++;
- current_row->child(child)->setData(column,Qt::CheckStateRole,0);
- vvSlicer * current_slicer=mSlicerManagers[i]->GetSlicer(column-1);
- current_slicer->SetActorVisibility(overlay_type,overlay_counts[overlay_type]-1,false);
+ clickedSlicer->SetActorVisibility("image", 0, vis);
+ clickedParentItem->setData(column, Qt::CheckStateRole, vis?2:0);
+
+ // Children
+ std::map<std::string, int> actorTypeCounts;
+ for (int iChild = 0; iChild < clickedParentItem->childCount(); iChild++) {
+ QTreeWidgetItem* currentChildItem = clickedParentItem->child(iChild);
+ std::string actorType = currentChildItem->data(1,Qt::UserRole).toString().toStdString();
+ vis = clickedSlicer->GetActorVisibility(actorType, actorTypeCounts[actorType]);
+ if(currentChildItem == clickedItem) {
+ // Toggle or force visibility if it was not on this branch so far
+ vis = !draw || !vis;
+ clickedSlicer->SetActorVisibility(actorType, actorTypeCounts[actorType], vis);
+ }
+ currentChildItem->setData(column, Qt::CheckStateRole, vis?2:0);
+ actorTypeCounts[actorType]++;
}
}
- //mSlicerManagers[i]->SetColorMap(-1);
- mSlicerManagers[i]->SetColorMap();
}
- mSlicerManagers[index]->GetSlicer(column-1)->Render();
+
+ clickedSlicer->Render();
}
//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
-void vvMainWindow::WindowsChanged(int window, int view, int slice)
+void vvMainWindow::WindowLevelChanged()
{
- infoPanel->setViews(window, view, slice);
+ // Base image
+ int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
+ if(index==-1) return;
+ windowSpinBox->setValue(mSlicerManagers[index]->GetColorWindow());
+ levelSpinBox->setValue(mSlicerManagers[index]->GetColorLevel());
+ colorMapComboBox->setCurrentIndex(mSlicerManagers[index]->GetColorMap());
+ presetComboBox->setCurrentIndex(mSlicerManagers[index]->GetPreset());
+
+ // Overlay image
+ if (mSlicerManagers[index]->GetSlicer(0)->GetOverlay())
+ overlayPanel->getOverlayProperty(mSlicerManagers[index]->GetOverlayColor(),
+ mSlicerManagers[index]->GetLinkOverlayWindowLevel(),
+ mSlicerManagers[index]->GetOverlayColorWindow(),
+ mSlicerManagers[index]->GetOverlayColorLevel());
+ else
+ overlayPanel->getOverlayProperty(-1,0,0.,0.);
+
+ // Fusion image
+ if (mSlicerManagers[index]->GetSlicer(0)->GetFusion())
+ overlayPanel->getFusionProperty(mSlicerManagers[index]->GetFusionOpacity(),
+ mSlicerManagers[index]->GetFusionThresholdOpacity(),
+ mSlicerManagers[index]->GetFusionColorMap(),
+ mSlicerManagers[index]->GetFusionWindow(),
+ mSlicerManagers[index]->GetFusionLevel());
+ else
+ overlayPanel->getFusionProperty(-1, -1, -1, -1, -1);
}
//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
-void vvMainWindow::WindowLevelChanged(double window, double level,int preset,int colormap)
+void vvMainWindow::WindowLevelEdited()
{
- windowSpinBox->setValue(window);
- levelSpinBox->setValue(level);
- colorMapComboBox->setCurrentIndex(colormap);
- presetComboBox->setCurrentIndex(preset);
+ presetComboBox->setCurrentIndex(6);
+ UpdateWindowLevel();
}
//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
-void vvMainWindow::WindowLevelEdited()
+void vvMainWindow::SetWindowLevel(double w, double l)
{
+ windowSpinBox->setValue(w);
+ levelSpinBox->setValue(l);
presetComboBox->setCurrentIndex(6);
+ colorMapComboBox->setCurrentIndex(0);
UpdateWindowLevel();
}
//------------------------------------------------------------------------------
mSlicerManagers[index]->SetColorLevel(levelSpinBox->value());
mSlicerManagers[index]->SetPreset(presetComboBox->currentIndex());
mSlicerManagers[index]->Render();
- windowSpinBox->setValue(mSlicerManagers[index]->GetColorWindow());
- levelSpinBox->setValue(mSlicerManagers[index]->GetColorLevel());
+ WindowLevelChanged();
}
}
//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
void vvMainWindow::ApplyWindowLevelToAllImages()
{
+ int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
+ if(index==-1) return;
+ double window = mSlicerManagers[index]->GetColorWindow();
+ double level = mSlicerManagers[index]->GetColorLevel();
+
for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
if (mSlicerManagers[i] == NULL)
continue;
- mSlicerManagers[i]->SetColorWindow(windowSpinBox->value());
- mSlicerManagers[i]->SetColorLevel(levelSpinBox->value());
+ mSlicerManagers[i]->SetColorWindow(window);
+ mSlicerManagers[i]->SetColorLevel(level);
mSlicerManagers[i]->SetPreset(6);
mSlicerManagers[i]->Render();
}
//------------------------------------------------------------------------------
void vvMainWindow::AddOverlayImage(int index, QString file)
{
-
- mInputPathName = itksys::SystemTools::GetFilenamePath(file.toStdString()).c_str();
- itk::ImageIOBase::Pointer reader = itk::ImageIOFactory::CreateImageIO(
- file.toStdString().c_str(), itk::ImageIOFactory::ReadMode);
- reader->SetFileName(file.toStdString().c_str());
- reader->ReadImageInformation();
- std::string component = reader->GetComponentTypeAsString(reader->GetComponentType());
- int dimension = reader->GetNumberOfDimensions();
- QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
- vvProgressDialog progress("Opening " + file.toStdString());
- qApp->processEvents();
-
- std::string filename = itksys::SystemTools::GetFilenameWithoutExtension(file.toStdString()).c_str();
- if (mSlicerManagers[index]->SetOverlay(file.toStdString(),dimension, component)) {
- //create an item in the tree with good settings
- QTreeWidgetItem *item = new QTreeWidgetItem();
- item->setData(0,Qt::UserRole,file.toStdString().c_str());
- item->setData(1,Qt::UserRole,tr("overlay"));
- QFileInfo fileinfo(file); //Do not show the path
- item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,fileinfo.fileName());
- item->setToolTip(COLUMN_IMAGE_NAME,fileinfo.absoluteFilePath());
+ if (QFile::exists(file))
+ {
+ mInputPathName = itksys::SystemTools::GetFilenamePath(file.toStdString()).c_str();
+ itk::ImageIOBase::Pointer reader = itk::ImageIOFactory::CreateImageIO(
+ file.toStdString().c_str(), itk::ImageIOFactory::ReadMode);
+ reader->SetFileName(file.toStdString().c_str());
+ reader->ReadImageInformation();
+ std::string component = reader->GetComponentTypeAsString(reader->GetComponentType());
+ int dimension = reader->GetNumberOfDimensions();
+ QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
+ vvProgressDialog progress("Opening " + file.toStdString());
qApp->processEvents();
- for (int j = 1; j <= 4; j++) {
- item->setData(j,Qt::CheckStateRole,DataTree->topLevelItem(index)->data(j,Qt::CheckStateRole));
- mSlicerManagers[index]->GetSlicer(j-1)->SetActorVisibility("overlay",0,
- DataTree->topLevelItem(index)->data(j,Qt::CheckStateRole).toInt());
- }
+ std::string filename = itksys::SystemTools::GetFilenameWithoutExtension(file.toStdString()).c_str();
+ if (mSlicerManagers[index]->SetOverlay(file.toStdString(),dimension, component)) {
+ //create an item in the tree with good settings
+ QTreeWidgetItem *item = new QTreeWidgetItem();
+ item->setData(0,Qt::UserRole,file.toStdString().c_str());
+ item->setData(1,Qt::UserRole,tr("overlay"));
+ QFileInfo fileinfo(file); //Do not show the path
+ item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,fileinfo.fileName());
+ item->setToolTip(COLUMN_IMAGE_NAME, mSlicerManagers[index]->GetListOfAbsoluteFilePathInOneString("overlay").c_str());
+ qApp->processEvents();
- //Create the buttons for reload and close
- qApp->processEvents();
- QTreePushButton* cButton = new QTreePushButton;
- cButton->setItem(item);
- cButton->setColumn(COLUMN_CLOSE_IMAGE);
- cButton->setToolTip(tr("close image"));
- cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
- connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
- this,SLOT(CloseImage(QTreeWidgetItem*, int)));
+ for (int j = 1; j <= 4; j++) {
+ item->setData(j,Qt::CheckStateRole,DataTree->topLevelItem(index)->data(j,Qt::CheckStateRole));
+ }
- QTreePushButton* rButton = new QTreePushButton;
- rButton->setItem(item);
- rButton->setColumn(COLUMN_RELOAD_IMAGE);
- rButton->setToolTip(tr("reload image"));
- rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
- connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
- this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
+ //Create the buttons for reload and close
+ qApp->processEvents();
+ QTreePushButton* cButton = new QTreePushButton;
+ cButton->setItem(item);
+ cButton->setColumn(COLUMN_CLOSE_IMAGE);
+ cButton->setToolTip(tr("close image"));
+ cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
+ connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
+ this,SLOT(CloseImage(QTreeWidgetItem*, int)));
- DataTree->topLevelItem(index)->setExpanded(1);
- DataTree->topLevelItem(index)->addChild(item);
- DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
- DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
+ QTreePushButton* rButton = new QTreePushButton;
+ rButton->setItem(item);
+ rButton->setColumn(COLUMN_RELOAD_IMAGE);
+ rButton->setToolTip(tr("reload image"));
+ rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
+ connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
+ this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
- //set the id of the image
- QString id = DataTree->topLevelItem(index)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString();
- item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
- UpdateTree();
- qApp->processEvents();
- ImageInfoChanged();
- QApplication::restoreOverrideCursor();
- } else {
- QApplication::restoreOverrideCursor();
- QString error = "Cannot import the new image.\n";
- error += mSlicerManagers[index]->GetLastError().c_str();
- QMessageBox::information(this,tr("Problem reading image !"),error);
+ DataTree->topLevelItem(index)->setExpanded(1);
+ DataTree->topLevelItem(index)->addChild(item);
+ DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
+ DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
+
+ //set the id of the image
+ QString id = DataTree->topLevelItem(index)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString();
+ item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
+ UpdateTree();
+ qApp->processEvents();
+ ImageInfoChanged();
+ QApplication::restoreOverrideCursor();
+ } else {
+ QApplication::restoreOverrideCursor();
+ QString error = "Cannot import the new image.\n";
+ error += mSlicerManagers[index]->GetLastError().c_str();
+ QMessageBox::information(this,tr("Problem reading image !"),error);
+ }
+ WindowLevelChanged();
}
+ else
+ QMessageBox::information(this,tr("Problem reading Overlay !"),"File doesn't exist!");
}
//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
-void vvMainWindow::AddFusionImage(int index, QString file)
+void vvMainWindow::ResetTransformationToIdentity()
{
- mInputPathName = itksys::SystemTools::GetFilenamePath(file.toStdString()).c_str();
- itk::ImageIOBase::Pointer reader = itk::ImageIOFactory::CreateImageIO(
- file.toStdString().c_str(), itk::ImageIOFactory::ReadMode);
- reader->SetFileName(file.toStdString().c_str());
- reader->ReadImageInformation();
- std::string component = reader->GetComponentTypeAsString(reader->GetComponentType());
- if (reader) {
- QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
- vvProgressDialog progress("Opening fusion");
- qApp->processEvents();
+ std::string actorType = DataTree->selectedItems()[0]->data(1,Qt::UserRole).toString().toStdString();
+ int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
+ mSlicerManagers[index]->ResetTransformationToIdentity(actorType);
+ ImageInfoChanged();
+}
+//------------------------------------------------------------------------------
- std::string filename = itksys::SystemTools::GetFilenameWithoutExtension(file.toStdString()).c_str();
- if (mSlicerManagers[index]->SetFusion(file.toStdString(),
- reader->GetNumberOfDimensions(), component)) {
- //create an item in the tree with good settings
- QTreeWidgetItem *item = new QTreeWidgetItem();
- item->setData(0,Qt::UserRole,file.toStdString().c_str());
- item->setData(1,Qt::UserRole,tr("fusion"));
- QFileInfo fileinfo(filename.c_str()); //Do not show the path
- item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,fileinfo.fileName());
- item->setToolTip(COLUMN_IMAGE_NAME,fileinfo.absoluteFilePath());
+//------------------------------------------------------------------------------
+void vvMainWindow::AddFusionImage(int index, QString file)
+{
+ if (QFile::exists(file))
+ {
+ mInputPathName = itksys::SystemTools::GetFilenamePath(file.toStdString()).c_str();
+ itk::ImageIOBase::Pointer reader = itk::ImageIOFactory::CreateImageIO(
+ file.toStdString().c_str(), itk::ImageIOFactory::ReadMode);
+ reader->SetFileName(file.toStdString().c_str());
+ reader->ReadImageInformation();
+ std::string component = reader->GetComponentTypeAsString(reader->GetComponentType());
+ if (reader) {
+ QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
+ vvProgressDialog progress("Opening fusion");
qApp->processEvents();
- for (int j = 1; j <= 4; j++) {
- item->setData(j,Qt::CheckStateRole,DataTree->topLevelItem(index)->data(j,Qt::CheckStateRole));
- mSlicerManagers[index]->GetSlicer(j-1)->SetActorVisibility("fusion",0,
- DataTree->topLevelItem(index)->data(j,Qt::CheckStateRole).toInt());
- }
+ std::string filename = itksys::SystemTools::GetFilenameWithoutExtension(file.toStdString()).c_str();
+ if (mSlicerManagers[index]->SetFusion(file.toStdString(),
+ reader->GetNumberOfDimensions(), component)) {
+ //create an item in the tree with good settings
+ QTreeWidgetItem *item = new QTreeWidgetItem();
+ item->setData(0,Qt::UserRole,file.toStdString().c_str());
+ item->setData(1,Qt::UserRole,tr("fusion"));
+ QFileInfo fileinfo(filename.c_str()); //Do not show the path
+ item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,fileinfo.fileName());
+ item->setToolTip(COLUMN_IMAGE_NAME, mSlicerManagers[index]->GetListOfAbsoluteFilePathInOneString("fusion").c_str());
+ qApp->processEvents();
- //Create the buttons for reload and close
- qApp->processEvents();
- QTreePushButton* cButton = new QTreePushButton;
- cButton->setItem(item);
- cButton->setColumn(COLUMN_CLOSE_IMAGE);
- cButton->setToolTip(tr("close image"));
- cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
- connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
- this,SLOT(CloseImage(QTreeWidgetItem*, int)));
+ for (int j = 1; j <= 4; j++) {
+ item->setData(j,Qt::CheckStateRole,DataTree->topLevelItem(index)->data(j,Qt::CheckStateRole));
+ }
- QTreePushButton* rButton = new QTreePushButton;
- rButton->setItem(item);
- rButton->setColumn(COLUMN_RELOAD_IMAGE);
- rButton->setToolTip(tr("reload image"));
- rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
- connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
- this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
+ //Create the buttons for reload and close
+ qApp->processEvents();
+ QTreePushButton* cButton = new QTreePushButton;
+ cButton->setItem(item);
+ cButton->setColumn(COLUMN_CLOSE_IMAGE);
+ cButton->setToolTip(tr("close image"));
+ cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
+ connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
+ this,SLOT(CloseImage(QTreeWidgetItem*, int)));
- DataTree->topLevelItem(index)->setExpanded(1);
- DataTree->topLevelItem(index)->addChild(item);
- DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
- DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
+ QTreePushButton* rButton = new QTreePushButton;
+ rButton->setItem(item);
+ rButton->setColumn(COLUMN_RELOAD_IMAGE);
+ rButton->setToolTip(tr("reload image"));
+ rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
+ connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
+ this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
- //set the id of the image
- QString id = DataTree->topLevelItem(index)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString();
- item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
- UpdateTree();
- qApp->processEvents();
- ImageInfoChanged();
- QApplication::restoreOverrideCursor();
+ DataTree->topLevelItem(index)->setExpanded(1);
+ DataTree->topLevelItem(index)->addChild(item);
+ DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
+ DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
+
+ //set the id of the image
+ QString id = DataTree->topLevelItem(index)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString();
+ item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
+ UpdateTree();
+ qApp->processEvents();
+ ImageInfoChanged();
+ QApplication::restoreOverrideCursor();
+ } else {
+ QApplication::restoreOverrideCursor();
+ QString error = "Cannot import the new image.\n";
+ error += mSlicerManagers[index]->GetLastError().c_str();
+ QMessageBox::information(this,tr("Problem reading image !"),error);
+ }
} else {
- QApplication::restoreOverrideCursor();
QString error = "Cannot import the new image.\n";
- error += mSlicerManagers[index]->GetLastError().c_str();
QMessageBox::information(this,tr("Problem reading image !"),error);
}
- } else {
- QString error = "Cannot import the new image.\n";
- QMessageBox::information(this,tr("Problem reading image !"),error);
}
+ else
+ QMessageBox::information(this,tr("Problem reading Fusion !"),"File doesn't exist!");
}
//------------------------------------------------------------------------------
}
QString Extensions = "Images ( *.mhd)";
+ Extensions += ";;Images ( *.mha)";
Extensions += ";;Images ( *.vf)";
QString file = QFileDialog::getOpenFileName(this,tr("Load deformation field"),mInputPathName,Extensions);
if (!file.isEmpty())
item->setData(1,Qt::UserRole,tr("vector"));
QFileInfo fileinfo(filename); //Do not show the path
item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,fileinfo.fileName());
- item->setToolTip(COLUMN_IMAGE_NAME,fileinfo.absoluteFilePath());
+ item->setToolTip(COLUMN_IMAGE_NAME, mSlicerManagers[index]->GetListOfAbsoluteFilePathInOneString("vector").c_str());
qApp->processEvents();
for (int j = 1; j <= 4; j++) {
item->setData(j,Qt::CheckStateRole,DataTree->topLevelItem(index)->data(j,Qt::CheckStateRole));
- mSlicerManagers[index]->GetSlicer(j-1)->SetActorVisibility("vector",0,
- DataTree->topLevelItem(index)->data(j,Qt::CheckStateRole).toInt());
}
//Create the buttons for reload and close
//------------------------------------------------------------------------------
-void vvMainWindow::SetOverlayProperty(int color)
+void vvMainWindow::SetOverlayProperty(int color, int linked, double window, double level)
{
int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
if (mSlicerManagers[index]->GetSlicer(0)->GetOverlay()) {
mSlicerManagers[index]->SetOverlayColor(color);
mSlicerManagers[index]->SetColorMap(0);
+ mSlicerManagers[index]->SetLinkOverlayWindowLevel(linked);
+ mSlicerManagers[index]->SetOverlayColorWindow(window);
+ mSlicerManagers[index]->SetOverlayColorLevel(level);
mSlicerManagers[index]->Render();
}
}
//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
-void vvMainWindow::SetFusionProperty(int opacity, int colormap,double window, double level)
+void vvMainWindow::SetFusionProperty(int opacity, int thresOpacity, int colormap,double window, double level)
{
int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
if (mSlicerManagers[index]->GetSlicer(0)->GetFusion()) {
- mSlicerManagers[index]->SetFusionOpacity(opacity);
mSlicerManagers[index]->SetFusionColorMap(colormap);
+ mSlicerManagers[index]->SetFusionOpacity(opacity);
+ mSlicerManagers[index]->SetFusionThresholdOpacity(thresOpacity);
mSlicerManagers[index]->SetFusionWindow(window);
mSlicerManagers[index]->SetFusionLevel(level);
mSlicerManagers[index]->SetColorMap(0);
OutputListeFormat.clear();
if (dimension == 1) {
OutputListeFormat.push_back(".mhd");
+ OutputListeFormat.push_back(".mha");
}
if (dimension == 2) {
OutputListeFormat.push_back(".bmp");
OutputListeFormat.push_back(".jpeg");
OutputListeFormat.push_back(".tif");
OutputListeFormat.push_back(".mhd");
+ OutputListeFormat.push_back(".mha");
OutputListeFormat.push_back(".hdr");
OutputListeFormat.push_back(".vox");
} else if (dimension == 3) {
OutputListeFormat.push_back(".mhd");
+ OutputListeFormat.push_back(".mha");
OutputListeFormat.push_back(".hdr");
OutputListeFormat.push_back(".vox");
} else if (dimension == 4) {
OutputListeFormat.push_back(".mhd");
+ OutputListeFormat.push_back(".mha");
}
QString Extensions = "AllFiles(*.*)";
for (int i = 0; i < OutputListeFormat.count(); i++) {
}
//------------------------------------------------------------------------------
+//------------------------------------------------------------------------------
+void vvMainWindow::SaveCurrentState()
+{
+ QString Extensions = "XML Files(*.xml)";
+ QString fileName = QFileDialog::getSaveFileName(this,
+ tr("Save Current Window State"),
+ "",
+ Extensions);
+
+ SaveCurrentStateAs(fileName.toStdString());
+}
+//------------------------------------------------------------------------------
+
+//------------------------------------------------------------------------------
+void vvMainWindow::SaveCurrentStateAs(const std::string& stateFile)
+{
+ vvSaveState save_state;
+ save_state.Run(this, stateFile);
+
+ std::cout << "void vvMainWindow::SaveCurrentState()" << std::endl;
+}
+
+//------------------------------------------------------------------------------
+void vvMainWindow::ReadSavedState()
+{
+ QString Extensions = "XML Files(*.xml)";
+ QString fileName = QFileDialog::getOpenFileName(this,
+ tr("Load Window State"),
+ "",
+ Extensions);
+
+ ReadSavedStateFile(fileName.toStdString());
+}
+//------------------------------------------------------------------------------
+
+//------------------------------------------------------------------------------
+void vvMainWindow::ReadSavedStateFile(const std::string& stateFile)
+{
+ vvReadState read_state;
+ read_state.Run(this, stateFile);
+}
+//------------------------------------------------------------------------------
+
+//------------------------------------------------------------------------------
+void vvMainWindow::LinkAllImages()
+{
+ linkPanel->linkAll();
+}
//------------------------------------------------------------------------------
void vvMainWindow::AddLink(QString image1,QString image2)
//------------------------------------------------------------------------------
void vvMainWindow::ChangeImageWithIndexOffset(vvSlicerManager *sm, int slicer, int offset)
{
+ if(mSlicerManagers.size()==1)
+ return;
+
int index = 0;
while(sm != mSlicerManagers[index])
index++;
- index = (index+offset) % mSlicerManagers.size();
+ index = (index+offset+mSlicerManagers.size()) % mSlicerManagers.size();
QTreeWidgetItem* item = GetItemFromSlicerManager(mSlicerManagers[index]);
item->setData(slicer+1,Qt::CheckStateRole,2); //change checkbox
void vvMainWindow::UpdateSliceRange(int slicer, int min, int max, int tmin, int tmax)
{
int position = int((min+max)/2);
- int tPosition = int((tmin+tmax)/2);
if (slicer == 0) {
NOVerticalSlider->setValue(position);
NOVerticalSlider->setRange(min,max);
NOHorizontalSlider->setRange(tmin,tmax);
- NOHorizontalSlider->setValue(tPosition);
} else if (slicer == 1) {
NEVerticalSlider->setValue(position);
NEVerticalSlider->setRange(min,max);
NEHorizontalSlider->setRange(tmin,tmax);
- NEHorizontalSlider->setValue(tPosition);
} else if (slicer == 2) {
SOVerticalSlider->setValue(position);
SOVerticalSlider->setRange(min,max);
SOHorizontalSlider->setRange(tmin,tmax);
- SOHorizontalSlider->setValue(tPosition);
} else if (slicer == 3) {
SEVerticalSlider->setValue(position);
SEVerticalSlider->setRange(min,max);
SEHorizontalSlider->setRange(tmin,tmax);
- SEHorizontalSlider->setValue(tPosition);
}
}
//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
+//------------------------------------------------------------------------------
+void vvMainWindow::SaveScreenshotAllSlices()
+{
+ QVTKWidget *widget = NOViewWidget;
+
+ int index = 0;// GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
+ vvSlicerManager * SM = mSlicerManagers[index];
+ vvImage * image = SM->GetImage();
+ vvSlicer * slicer = SM->GetSlicer(0);
+ int orientation = slicer->GetOrientation();
+ int nbSlices = image->GetSize()[orientation];
+ vtkSmartPointer<vtkRenderWindow> renderWindow = widget->GetRenderWindow();
+
+ // Select filename base
+ QString filename = QFileDialog::getSaveFileName(this,
+ tr("Save As (filename will be completed by slice number)"),
+ itksys::SystemTools::GetFilenamePath(mSlicerManagers[index]->GetFileName()).c_str(),
+ "Images( *.png);;Images( *.jpg)");
+
+ // Loop on slices
+ for(int i=0; i<nbSlices; i++) {
+ // Change the slice
+ slicer->SetSlice(i); // -> change the slice of the current slicer
+ SM->UpdateSlice(0); // --> this one emit UpdateSlice
+ QCoreApplication::flush(); // -> needed to force display of contours
+
+ // Screenshot
+ vtkSmartPointer<vtkWindowToImageFilter> windowToImageFilter = vtkSmartPointer<vtkWindowToImageFilter>::New();
+ windowToImageFilter->SetInput(renderWindow);
+ windowToImageFilter->SetMagnification(1);
+ windowToImageFilter->SetInputBufferTypeToRGBA(); //also record the alpha (transparency) channel
+ windowToImageFilter->Update();
+
+ vtkSmartPointer<vtkPNGWriter> writer = vtkSmartPointer<vtkPNGWriter>::New();
+ std::string fn = itksys::SystemTools::GetFilenameWithoutLastExtension(filename.toStdString());
+ std::string num = clitk::toString(i);
+ if (i<10) num = "0"+num;
+ if (i<100) num = "0"+num;
+ if (i<1000) num = "0"+num;
+
+ fn = itksys::SystemTools::GetFilenamePath(filename.toStdString()) + "/"+ fn
+ + "_" + num + itksys::SystemTools::GetFilenameLastExtension(filename.toStdString());
+ writer->SetFileName(fn.c_str());
+ writer->SetInput(windowToImageFilter->GetOutput());
+ writer->Write();
+ }
+}
+//------------------------------------------------------------------------------
+
+
//------------------------------------------------------------------------------
void vvMainWindow::SaveScreenshot(QVTKWidget *widget)
{
//create an item in the tree with good settings
QTreeWidgetItem *item = new QTreeWidgetItem();
item->setData(0,Qt::UserRole,slicer_manager->GetFileName().c_str());//files[i].c_str());
+ item->setData(1,Qt::UserRole,tr("image"));
item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,slicer_manager->GetFileName().c_str());//filename.c_str());
qApp->processEvents();
this, SLOT(OverlayChanged(int,double,double)));
connect(mSlicerManagers.back(), SIGNAL(UpdateFusion(int, double)),
this, SLOT(FusionChanged(int,double)));
- connect(mSlicerManagers.back(), SIGNAL(UpdateWindows(int, int, int)),
- this,SLOT(WindowsChanged(int, int, int)));
- connect(mSlicerManagers.back(), SIGNAL(WindowLevelChanged(double, double,int, int)),
- this,SLOT(WindowLevelChanged(double, double, int, int)));
+ connect(mSlicerManagers.back(), SIGNAL(WindowLevelChanged()),
+ this,SLOT(WindowLevelChanged()));
connect(mSlicerManagers.back(), SIGNAL(UpdateSlice(int,int)),
this,SLOT(UpdateSlice(int,int)));
connect(mSlicerManagers.back(), SIGNAL(UpdateTSlice(int, int)),
git://git.creatis.insa-lyon.fr / clitk.git / blobdiff