Clean code

diff --git a/packages/itk/src/bbitkDetectTubularStructuresInImage.cxx b/packages/itk/src/bbitkDetectTubularStructuresInImage.cxx
deleted file mode 100644 (file)
index 98db8c3..0000000
--- a/packages/itk/src/bbitkDetectTubularStructuresInImage.cxx
+++ /dev/null
@@ -1,12 +0,0 @@
-//===== 
-// Before editing this file, make sure it's a file of your own (i.e.: it wasn't generated from xml description; if so : your modifications will be lost)
-//===== 
-#include "bbitkDetectTubularStructuresInImage.h"
-#include "bbitkPackage.h"
-namespace bbitk
-{
-    BBTK_ADD_BLACK_BOX_TO_PACKAGE(itk,DetectTubularStructuresInImage)
-    BBTK_BLACK_BOX_IMPLEMENTATION(DetectTubularStructuresInImage,bbtk::AtomicBlackBox);
-} // EO namespace bbitk
-
-

diff --git a/packages/itk/src/bbitkDetectTubularStructuresInImage.h b/packages/itk/src/bbitkDetectTubularStructuresInImage.h
deleted file mode 100644 (file)
index fc05753..0000000
--- a/packages/itk/src/bbitkDetectTubularStructuresInImage.h
+++ /dev/null
@@ -1,135 +0,0 @@
-//===== 
-// Before editing this file, make sure it's a file of your own (i.e.: it wasn't generated from xml description; if so : your modifications will be lost)
-//===== 
-#ifndef __bbitkDetectTubularStructuresInImage_h_INCLUDED__
-#define __bbitkDetectTubularStructuresInImage_h_INCLUDED__
-
-#include "bbitk_EXPORT.h"
-#include "bbtkAtomicBlackBox.h"
-#include "iostream"
-
-#include "itkHessian3DToVesselnessMeasureImageFilter.h"
-#include "itkHessianRecursiveGaussianImageFilter.h"
-
-#include "bbitkImage.h"
-
-namespace bbitk
-{
-
-class bbitk_EXPORT DetectTubularStructuresInImage
- : 
-   public bbtk::AtomicBlackBox
-{
-  BBTK_BLACK_BOX_INTERFACE(DetectTubularStructuresInImage,bbtk::AtomicBlackBox);
-//===== 
-// Before editing this file, make sure it's a file of your own (i.e.: it wasn't generated from xml description; if so : your modifications will be lost)
-//===== 
-    BBTK_DECLARE_INPUT(In,anyImagePointer);
-    BBTK_DECLARE_INPUT(Sigma,double);
-    BBTK_DECLARE_INPUT(Alpha1,double);
-    BBTK_DECLARE_INPUT(Alpha2,double);
-    BBTK_DECLARE_OUTPUT(Out,anyImagePointer);
-    BBTK_PROCESS(ProcessSwitch);
-    
-    private :
-    inline void ProcessSwitch();
-    template <class T> void Process();
-    itk::Object* mOutput;
-
-//=====
-// Before editing this file, make sure it's a file of your own (i.e.: it wasn't generated from xml description; if so : your modifications will be lost)
-//===== 
-};
-
-BBTK_BEGIN_DESCRIBE_BLACK_BOX(DetectTubularStructuresInImage,bbtk::AtomicBlackBox);
-  BBTK_NAME("DetectTubularStructuresInImage");
-  BBTK_AUTHOR("InfoDev");
-  BBTK_DESCRIPTION("detect bright tubular structures in the image");
-  BBTK_CATEGORY("empty");
-  BBTK_INPUT(DetectTubularStructuresInImage,In,"Input image",anyImagePointer,"");
-  BBTK_INPUT(DetectTubularStructuresInImage,Sigma,"(default 1) hessianFilter Sigma",double,"");
-  BBTK_INPUT(DetectTubularStructuresInImage,Alpha1,"(default 0.5) vesselnessFilter Alpha1",double,"");
-  BBTK_INPUT(DetectTubularStructuresInImage,Alpha2,"(default 2.0) vesselnessFilter Alpha2",double,"");
-  BBTK_OUTPUT(DetectTubularStructuresInImage,Out,"Output image",anyImagePointer,"");
-BBTK_END_DESCRIBE_BLACK_BOX(DetectTubularStructuresInImage);
-//===== 
-// Before editing this file, make sure it's a file of your own (i.e.: it wasn't generated from xml description; if so : your modifications will be lost)
-//===== 
-
-//===================================================
-void DetectTubularStructuresInImage::ProcessSwitch()
-{
-    bbtk::TypeInfo t = bbGetInputIn().type();
-//    BBTK_TEMPLATE_ITK_IMAGE_SWITCH(t, this->Process);
-//     BBTK_TEMPLATE_ITK_IMAGE_DIM_3_SWITCH(t, this->Process , "Error format. (you need 3D short,float,double)") ;
-
-     BBTK_BEGIN_TEMPLATE_SWITCH(t)
-//       BBTK_SWITCH_ITK_IMAGE_short_3(t,this->Process,)
-//       BBTK_SWITCH_ITK_IMAGE_float_3(t,this->Process,)
-       BBTK_SWITCH_ITK_IMAGE_double_3(t,this->Process,)
-     BBTK_END_TEMPLATE_SWITCH(t)
-}
-
-
-//=====
-// Before editing this file, make sure it's a file of your own (i.e.: it wasn't generated from xml description; if so : your modifications will be lost)
-//=====
-template <class T>
-void DetectTubularStructuresInImage::Process()
-{
-     // https://docs.itk.org/projects/doxygen/en/stable/Examples_2Filtering_2VesselnessMeasureImageFilter_8cxx-example.html   
-     // https://docs.itk.org/projects/doxygen/en/stable/classitk_1_1HessianRecursiveGaussianImageFilter.html
-     // https://docs.itk.org/projects/doxygen/en/stable/classitk_1_1Hessian3DToVesselnessMeasureImageFilter.html
-     // http://www.image.med.osaka-u.ac.jp/member/yoshi/paper/linefilter.pdf
-    printf("EED DetectTubularStructuresInImage::Process Start\n");
-    constexpr unsigned int Dimension    = 3;
-    using InputPixelType                = double;
-    using OutputPixelType               = float;
-    using InputImageType                = itk::Image<InputPixelType, Dimension>;
-    using HessianFilterType             = itk::HessianRecursiveGaussianImageFilter<InputImageType>;
-    using VesselnessMeasureFilterType   = itk::Hessian3DToVesselnessMeasureImageFilter<OutputPixelType>;
-    auto hessianFilter                  = HessianFilterType::New();
-    auto vesselnessFilter               = VesselnessMeasureFilterType::New();
-    T* inputImage = this->bbGetInputIn().get<T*>();
-    hessianFilter->SetInput( inputImage );
-    hessianFilter->SetSigma(static_cast<double>( bbGetInputSigma() ));
-    vesselnessFilter->SetInput(hessianFilter->GetOutput());
-    vesselnessFilter->SetAlpha1(static_cast<double>( bbGetInputAlpha1() ));
-    vesselnessFilter->SetAlpha2(static_cast<double>( bbGetInputAlpha2() ));
-    vesselnessFilter->Update();
-    vesselnessFilter->GetOutput()->Register();
-    if (mOutput) mOutput->UnRegister();
-    this->bbSetOutputOut( vesselnessFilter->GetOutput() );
-    mOutput = vesselnessFilter->GetOutput();
-    printf("EED DetectTubularStructuresInImage::Process End\n");
-}
-
-//=====
-// Before editing this file, make sure it's a file of your own (i.e.: it wasn't generated from xml description; if so : your modifications will be lost)
-//=====
-void DetectTubularStructuresInImage::bbUserSetDefaultValues()
-{
-    mOutput = 0;
-    bbSetInputSigma(1);
-    bbSetInputAlpha1(0.5);
-    bbSetInputAlpha2(2.0);
-}
-
-//=====
-// Before editing this file, make sure it's a file of your own (i.e.: it wasn't generated from xml description; if so : your modifications will be lost)
-//=====
-void DetectTubularStructuresInImage::bbUserInitializeProcessing()
-{
-}
-
-//=====
-// Before editing this file, make sure it's a file of your own (i.e.: it wasn't generated from xml description; if so : your modifications will be lost)
-//=====
-void DetectTubularStructuresInImage::bbUserFinalizeProcessing()
-{
-}
-
-}// EO namespace bbitk
-
-#endif // __bbitkDetectTubularStructuresInImage_h_INCLUDED__
-