Remove test file

diff --git a/segmentation/clitkTestFilter.cxx b/segmentation/clitkTestFilter.cxx
deleted file mode 100644 (file)
index 37c6d91..0000000
--- a/segmentation/clitkTestFilter.cxx
+++ /dev/null
@@ -1,228 +0,0 @@
-
-/*=========================================================================
-  Program:   vv                     http://www.creatis.insa-lyon.fr/rio/vv
-
-  Authors belong to: 
-  - University of LYON              http://www.universite-lyon.fr/
-  - Léon Bérard cancer center       http://oncora1.lyon.fnclcc.fr
-  - CREATIS CNRS laboratory         http://www.creatis.insa-lyon.fr
-
-  This software is distributed WITHOUT ANY WARRANTY; without even
-  the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
-  PURPOSE.  See the copyright notices for more information.
-
-  It is distributed under dual licence
-
-  - BSD        See included LICENSE.txt file
-  - CeCILL-B   http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
-  ======================================================================-====*/
-
-// clitk
-#include "clitkTestFilter_ggo.h"
-#include "clitkImageCommon.h"
-#include "clitkBooleanOperatorLabelImageFilter.h"
-#include "clitkAutoCropFilter.h"
-//#include "clitkRelativePositionConstraintLabelImageFilter.h"
-#include "clitkResampleImageWithOptionsFilter.h"
-#include "clitkAddRelativePositionConstraintToLabelImageFilter.h"
-
-#include "clitkExtractLungFilter.h"
-#include "clitkExtractPatientFilter.h"
-#include "clitkExtractMediastinumFilter.h"
-
-#include "clitkTestStation7.h"
-
-// ITK ENST
-#include "RelativePositionPropImageFilter.h"
-
-//--------------------------------------------------------------------
-int main(int argc, char * argv[]) {
-
-  // Init command line
-  GGO(clitkTestFilter, args_info);
-
-  // Image types
-  //typedef unsigned char PixelType;
-  typedef short PixelType;
-  static const int Dim=3;
-  typedef itk::Image<PixelType, Dim> InputImageType;
-
-  // Read inputs
-  InputImageType::Pointer input1;
-  InputImageType::Pointer input2;
-  InputImageType::Pointer input3;
-  if (args_info.input1_given) input1 = clitk::readImage<InputImageType>(args_info.input1_arg, true);
-  if (args_info.input2_given) input2 = clitk::readImage<InputImageType>(args_info.input2_arg, true);
-  if (args_info.input3_given) input3 = clitk::readImage<InputImageType>(args_info.input3_arg, true);
-  
-  // Declare output
-  InputImageType::Pointer output;
-
-  //--------------------------------------------------------------------
-  // Filter test BooleanOperatorLabelImageFilter
-  if (0) {
-    typedef clitk::BooleanOperatorLabelImageFilter<InputImageType> FilterType;
-    FilterType::Pointer filter = FilterType::New();
-    filter->SetInput1(input1);
-    filter->SetInput2(input2);
-    output = clitk::NewImageLike<InputImageType>(input1);
-    filter->GraftOutput(output);  /// TO VERIFY !!!
-    filter->Update();  
-    filter->SetInput2(input3);
-    filter->Update();    
-    output = filter->GetOutput();
-    clitk::writeImage<InputImageType>(output, args_info.output_arg);
-  }
-  
-  //--------------------------------------------------------------------
-  // Filter test AutoCropLabelImageFilter
-  if (0) {
-    typedef clitk::AutoCropFilter<InputImageType> FilterType;
-    FilterType::Pointer filter = FilterType::New();
-    filter->SetInput(input1);
-    filter->Update();    
-    output = filter->GetOutput();
-    clitk::writeImage<InputImageType>(output, args_info.output_arg);
-  }
-
-  //--------------------------------------------------------------------
-  // Filter test RelativePositionPropImageFilter
-  if (0) {
-    typedef itk::Image<float, Dim> OutputImageType;
-    OutputImageType::Pointer outputf;
-    typedef itk::RelativePositionPropImageFilter<InputImageType, OutputImageType> FilterType;
-    FilterType::Pointer filter = FilterType::New();
-    filter->SetInput(input1);
-
-    filter->SetAlpha1(clitk::deg2rad(args_info.angle1_arg)); // xy plane
-    filter->SetAlpha2(clitk::deg2rad(args_info.angle2_arg));
-    filter->SetK1(M_PI/2.0); // Opening parameter, default = pi/2
-    filter->SetFast(true);
-    filter->SetRadius(2);
-    filter->SetVerboseProgress(true);
-    
-    /*         A1   A2
-               Left      0    0
-               Right   180    0
-               Ant      90    0
-               Post    -90    0
-               Inf       0   90
-               Sup       0  -90
-    */
-
-    filter->Update();    
-    clitk::writeImage<OutputImageType>(filter->GetOutput(), args_info.output_arg);
-  }
-
-  //--------------------------------------------------------------------
-  // Filter test 
-  if (0) {
-    typedef itk::Image<short, Dim> OutputImageType;
-    typedef clitk::ResampleImageWithOptionsFilter<InputImageType, OutputImageType> FilterType;
-    FilterType::Pointer filter = FilterType::New();
-    filter->SetInput(input1); 
-    filter->SetOutputIsoSpacing(1);
-    //filter->SetNumberOfThreads(4); // auto
-    filter->SetGaussianFilteringEnabled(false);
-    filter->Update();    
-    clitk::writeImage<OutputImageType>(filter->GetOutput(), args_info.output_arg);
-  }
-
-  //--------------------------------------------------------------------
-  // Filter AddRelativePositionConstraintToLabelImageFilter test 
-  if (0) {
-    /*
-    typedef clitk::AddRelativePositionConstraintToLabelImageFilter<InputImageType> FilterType;
-    FilterType::Pointer filter = FilterType::New();
-    filter->SetInput(input1); 
-    filter->SetInputObject(input2); 
-    filter->SetOrientationType(FilterType::LeftTo);
-    filter->SetIntermediateSpacing(5);
-    filter->SetFuzzyThreshold(0.5);
-    filter->VerboseStepOn();
-    filter->WriteStepOff();
-    filter->Update();
-
-    filter->SetInput(filter->GetOutput()); 
-    filter->SetInputObject(input2); 
-    filter->SetOrientationType(FilterType::RightTo);
-    filter->SetIntermediateSpacing(5);
-    filter->SetFuzzyThreshold(0.5);
-    filter->Update();   
-
-    clitk::writeImage<InputImageType>(filter->GetOutput(), args_info.output_arg);
-    */
-  }
-
-  //--------------------------------------------------------------------
-  // Filter test ExtractPatientFilter
-  if (0) {
-    /*
-    typedef itk::Image<char, Dim> OutputImageType;
-    typedef clitk::ExtractPatientFilter<InputImageType, OutputImageType> FilterType;
-    FilterType::Pointer filter = FilterType::New();
-    filter->SetInput(input1);
-    filter->VerboseStepOn();
-    filter->WriteStepOn();    
-    // options (default)
-    filter->SetUpperThreshold(-300);
-    filter->FinalOpenCloseOff(); // default=on (not rezally needed ?)
-    filter->Update();    
-    OutputImageType::Pointer output = filter->GetOutput();
-    clitk::writeImage<OutputImageType>(output, args_info.output_arg);
-    */
-  }
-
-  //--------------------------------------------------------------------
-  // Filter test ExtractLungsFilter
-  if (0) {
-    /*
-    typedef itk::Image<PixelType, Dim> OutputImageType; // to change into char
-    typedef clitk::ExtractLungFilter<InputImageType, OutputImageType> FilterType;
-    FilterType::Pointer filter = FilterType::New();
-    // DD(filter->GetNumberOfSteps());
-    filter->SetInput(input1); // CT
-    filter->SetInputPatientMask(input2, 0); // Patient mask and BG value
-    filter->VerboseStepOn();
-    filter->WriteStepOn();    
-    // options (default)
-    //filter->SetBackgroundValue(0);
-    filter->SetUpperThreshold(-300);
-    // filter->SetMinimumComponentSize(100);
-
-    filter->Update();    
-    OutputImageType::Pointer output = filter->GetOutput();
-    clitk::writeImage<OutputImageType>(output, args_info.output_arg);
-    */
-  }
-
-  //--------------------------------------------------------------------
-  // Filter test ExtractMediastinumFilter
-  if (0) {
-    /*
-    typedef clitk::ExtractMediastinumFilter<InputImageType> FilterType;
-    FilterType::Pointer filter = FilterType::New();
-    filter->SetInputPatientLabelImage(input1);
-    filter->SetInputLungLabelImage(input2, 0, 1, 2); // BG, FG Left Lung, FG Right Lung
-    filter->SetInputBonesLabelImage(input3);
-    filter->VerboseStepOn();
-    filter->WriteStepOn();    
-    filter->Update();    
-    output = filter->GetOutput();
-    clitk::writeImage<InputImageType>(output, args_info.output_arg);
-    */
-  }
-
-  //--------------------------------------------------------------------
-  // Test for auto register sub-task in a segmentation process
-  if (1) {
-    ExtractLymphStation_7 * s7 = new ExtractLymphStation_7;
-    //    s7->SetArgsInfo<args_info_clitkTestFilter>(args_info);
-    // GetParent->SetArgsInfo<>
-    s7->StartSegmentation();
-  }
-
-  // This is the end my friend
-  return EXIT_SUCCESS;
-}// end main
-//--------------------------------------------------------------------