#include "bbcreaImageIOItkImagesChooserDialogBox.h"
#include "bbcreaImageIOPackage.h"
+#include "itkImage.h"
+#include "itkImportImageFilter.h"
+
+/*
// -------------------------------------------------------------------------
// LFV: avoid itk::Concept check on 4d or superior images
#define BBCREAIMAGEIO_ChooserDlg_Template( t, ty, di ) \
- if( t == typeid( itk::Image< ty, di > ) ) \
+ if( t == typeid( itk::Image< ty, di >* ) ) \
{ \
this->Export< itk::Image< ty, di > >( ); \
this->ExportVTK< itk::Image< ty, di > >( ); \
}
+*/
+
+// -------------------------------------------------------------------------
+// LFV: avoid itk::Concept check on 4d or superior images
+#define BBCREAIMAGEIO_ChooserDlg_Template( t, ty, di ) \
+ if( t == typeid( itk::Image< ty, di >* ) ) \
+ { \
+ this->Export< ty , di >( ); \
+ this->ExportVTK< itk::Image< ty, di > >( ); \
+ }
+
+
// -------------------------------------------------------------------------
namespace bbcreaImageIO
delete dlg;
}
-template <class TImage>
+
+//template <class TImage>
+template <typename ty, size_t di>
void ItkImagesChooserDialogBox::Export()
{
- if (dlg->getImagesSelected().size() == 1)
- {
+ typedef itk::Image<ty,di> TImage;
+
+printf("EED ItkImagesChooserDialogBox::Export Start \n");
+ if (dlg->getImagesSelected().size() == 1)
+ {
+printf("EED ItkImagesChooserDialogBox::Export 1\n");
bbSetOutputOut( dlg->getTemplatedImagesSelected<TImage>().front().GetPointer() );
- }
- else if (dlg->getImagesSelected().size() > 1)
- {
- OutputImagesITKType outVect;
-
- typename std::vector<typename TImage::Pointer> tempImgs= dlg->getTemplatedImagesSelected<TImage>();
- typename std::vector<typename TImage::Pointer>::iterator it = tempImgs.begin();
- for(;it != tempImgs.end(); ++it)
- {
- outVect.push_back( (*it).GetPointer() );
- }
- bbSetOutputOutIImages( outVect);
- }
- else
- {
+ } else if (dlg->getImagesSelected().size() > 1){
+printf("EED ItkImagesChooserDialogBox::Export 2\n");
+ OutputImagesITKType outVect;
+ typename std::vector<typename TImage::Pointer> tempImgs= dlg->getTemplatedImagesSelected<TImage>();
+ typename std::vector<typename TImage::Pointer>::iterator it = tempImgs.begin();
+ for(;it != tempImgs.end(); ++it)
+ {
+ outVect.push_back( (*it).GetPointer() );
+ } // for
+ bbSetOutputOutIImages( outVect);
+
+//EED creater one 3D image from 2D list
+// const unsigned int Dimension = 3;
+// typedef itk::RGBPixel< unsigned char > RGBPixelType;
+// typedef itk::Image< RGBPixelType, Dimension > RGBImageType;
+// typedef itk::ImportImageFilter< RGBPixelType, Dimension > ImportFilterType;
+
+// typedef itk::RGBPixel< ty > RGBPixelType;
+ typedef ty RGBPixelType;
+ typedef itk::ImportImageFilter< ty , di > ImportFilterType;
+ typename ImportFilterType::Pointer importFilter = ImportFilterType::New();
+
+
+ typename TImage::SizeType imsize;
+// imsize[0] = img.width();
+// imsize[1] = img.height();
+ imsize[0] = tempImgs[0].GetPointer()->GetLargestPossibleRegion().GetSize()[0];
+ imsize[1] = tempImgs[0].GetPointer()->GetLargestPossibleRegion().GetSize()[1];
+ imsize[2] = tempImgs.size();
+printf("EED ItkImagesChooserDialogBox::Export 2.10\n");
+
+ typename ImportFilterType::IndexType start;
+ start.Fill( 0 );
+ typename ImportFilterType::RegionType region;
+ region.SetIndex( start );
+ region.SetSize( imsize );
+ importFilter->SetRegion( region );
+
+// const itk::SpacePrecisionType origin[ di ] = { 0.0, 0.0, 0.0 };
+ const itk::SpacePrecisionType origin[ 3 ] = { 0.0, 0.0, 0.0 };
+ importFilter->SetOrigin( origin );
+
+// const itk::SpacePrecisionType spacing[ di ] = { 1.0, 1.0, 1.0 };
+ const itk::SpacePrecisionType spacing[ 3 ] = { 1.0, 1.0, 1.0 };
+ importFilter->SetSpacing( spacing );
+ const unsigned long int numberOfPixels2D = imsize[0]*imsize[1];
+ const unsigned long int numberOfPixels3D = imsize[0]*imsize[1]*imsize[2];
+
+ RGBPixelType * localBuffer = new RGBPixelType[ numberOfPixels3D ];
+ RGBPixelType * tmpLocalBuffer = localBuffer;
+printf("EED ItkImagesChooserDialogBox::Export 2.20\n");
+
+ it = tempImgs.begin();
+ for(;it != tempImgs.end(); ++it)
+ {
+printf("EED ItkImagesChooserDialogBox::Export 2.30\n");
+ memcpy(tmpLocalBuffer, (*it).GetPointer()->GetBufferPointer(), numberOfPixels2D);
+ tmpLocalBuffer = tmpLocalBuffer + numberOfPixels2D;
+ } // for
+
+ const bool importImageFilterWillOwnTheBuffer = true;
+ importFilter->SetImportPointer( localBuffer , numberOfPixels3D , importImageFilterWillOwnTheBuffer );
+importFilter->Update();
+importFilter->Register();
+printf("EED ItkImagesChooserDialogBox::Export 2.40\n");
+
+// bbSetOutputOut( (*tempImgs.begin()).GetPointer() );
+// bbSetOutputOut( importFilter->GetOutput().unsafe_get<TImage*>() );
+ bbSetOutputOut( importFilter->GetOutput() );
+printf("EED ItkImagesChooserDialogBox::Export 2.50\n");
+
+ } else {
+printf("EED ItkImagesChooserDialogBox::Export 3\n");
// warning: passing NULL to non-pointer
//bbSetOutputOut( NULL);
bbSetOutputOut(0); // JPR
// reader->Update();
//reader->GetOutput()->Register();
// this->bbSetOutputOut(reader->GetOutput());
+
+printf("EED ItkImagesChooserDialogBox::Export End \n");
+
}
+
+
template <class TImage>
void ItkImagesChooserDialogBox::ExportVTK()
{
+printf("EED ItkImagesChooserDialogBox::ExportVTK Start \n");
+
// BBTK can support only a vector with same dimensions image.
if (dlg->getDims().front() < 4)
{
dlg->split3Din3Dvtk<TImage>( (*it) );
}
bbSetOutputOutVImages( dlg->getVtkImagesSelected() );
- }
- else if (dlg->getDims().front() == 4)
- {
+ } else if (dlg->getDims().front() == 4) {
// To Test
// dlg->split4Din3Dvtk("d:/temp2");
// bbSetOutputOutVImages( dlg->getVtkImagesSelected());
- }
- else
- {
- // NOT IMPLEMENTED YET FOR DIMENSIONS > 4
-
- }
-
+ } else {
+ // NOT IMPLEMENTED YET FOR DIMENSIONS > 4
+ } // if dlg
+printf("EED ItkImagesChooserDialogBox::ExportVTK End \n");
}
+
//=====
// Before editing this file, make sure it's a file of your own (i.e.: it wasn't generated from xml description; if so : your modifications will be lost)
//=====
void ItkImagesChooserDialogBox::bbUserSetDefaultValues()
-{
-
+{
}
+
//=====
// Before editing this file, make sure it's a file of your own (i.e.: it wasn't generated from xml description; if so : your modifications will be lost)
//=====
void ItkImagesChooserDialogBox::bbUserInitializeProcessing()
{
-
}
+
//=====
// Before editing this file, make sure it's a file of your own (i.e.: it wasn't generated from xml description; if so : your modifications will be lost)
//=====
void ItkImagesChooserDialogBox::bbUserFinalizeProcessing()
{
-
}
-}
-// EO namespace bbcreaImageIO
+
+} // EO namespace bbcreaImageIO
std::string name = crea::wx2std(wxArray[i]);
// FOR THE MOMENT ONLY short 3D et short 4D
readImg(name);
- }
- }
- else {
+ } // for
+ } else {
// TO DO WARNING MESSAGES
- }
- }
+ } // if
+ } // if
SetReturnCode( resultShowModal );
// Close();
EndModal( resultShowModal );
}
+
+/////////////////////////////////////////////////////////////////////
+// //
+//////////////////////////////////////////////////////////////////////
void WxAnySimpleDlg::setExts(std::vector<std::string> i_exts)
{
m_exts = i_exts;
}
- /////////////////////////////////////////////////////////////////////
+
+/////////////////////////////////////////////////////////////////////
// //
//////////////////////////////////////////////////////////////////////
-
void WxAnySimpleDlg::OnReadDirectory(wxCommandEvent &event)
{
+printf("EED WxAnySimpleDlg::OnReadDirectory Start\n");
int resultShowModal;
bool bvalid = false;
long style = wxDD_DEFAULT_STYLE | wxDD_DIR_MUST_EXIST;
if ( resultShowModal==wxID_OK )
{
std::string path = crea::wx2std(dirDlg->GetPath());
+printf("EED WxAnySimpleDlg::OnReadDirectory path %s\n", path.c_str() );
+
+/*
typedef boost::filesystem::directory_iterator dir_it;
dir_it itr(path);
dir_it end_itr;
- /*if (boost::filesystem::exists(path))
- {*/
+// if (boost::filesystem::exists(path))
+// {
for(;itr != end_itr; ++itr)
{
- bvalid = m_exts.size() == 0? true : false;
- std::vector<std::string>::iterator it = m_exts.begin();
- std::string ext = itr->path().filename().string().substr(itr->path().filename().string().find_last_of("."));
- for(; it != m_exts.end(); it++)
- {
- if(ext == (*it) )
- {
- bvalid = true;
- break;
- }
- }
+//EED
+// All files have the same extention
+// bvalid = m_exts.size() == 0? true : false;
+// std::vector<std::string>::iterator it = m_exts.begin();
+// std::string ext = itr->path().filename().string().substr(itr->path().filename().string().find_last_of("."));
+// for(; it != m_exts.end(); it++)
+// {
+// if(ext == (*it) )
+// {
+// bvalid = true;
+// break;
+// }
+// } // for
+bvalid=true;
if (!boost::filesystem::is_directory(itr->status()) && bvalid)
{
- readImg(itr->path().string().c_str());
- }
- }
- }
+printf("EED WxAnySimpleDlg::OnReadDirectory Each file %s \n", itr->path().string().c_str() );
+ readImg( itr->path().string().c_str() );
+ } // if
+ } // for itr
+*/
+
+ typedef vector<boost::filesystem::path> vec; // store paths
+ vec v; // so we can sort them later
+ copy(boost::filesystem::directory_iterator(path), boost::filesystem::directory_iterator(), back_inserter(v));
+ sort(v.begin(), v.end()); // sort, since directory iteration
+ // is not ordered on some file systems
+ for (vec::const_iterator it (v.begin()); it != v.end(); ++it)
+ {
+ readImg( it->string().c_str() );
+ cout << " " << *it << '\n';
+ }
+
+
+
+
+ } // if OK
SetReturnCode( resultShowModal );
// Close();
EndModal( resultShowModal );
+printf("EED WxAnySimpleDlg::OnReadDirectory End\n");
+
}
//////////////////////////////////////////////////////////////////////
return imageIO->GetNumberOfDimensions();
}
+
void WxAnySimpleDlg::readImg(const std::string &i_name)
{
size_t dims = getNumberOfDimensions(i_name);
+
+printf("EED WxAnySimpleDlg::readImg dims=%d \n",dims);
+
//const std::type_info *type= &getType(i_name);
switch(dims)
{
}
else
{
+ printf("EED WxAnySimpleDlg::readImg Not type found for DIM 3 \n");
//????FCY, so what the type????
}
break;
}
else
{
+ printf("EED WxAnySimpleDlg::readImg Not type found for DIM 4 \n");
//????FCY, so what the type????
}
break;
git://git.creatis.insa-lyon.fr / creaImageIO.git / commitdiff