#define memicmp strncasecmp
#endif
-/************************************************************************/
-/* */
-/* file : AVS_RXDR.CPP */
-/* */
-/* purpose : AVS module for reading XDRs */
-/* */
-/* authors : Lambert Zijp (Conquest) */
-/* Based on a true story by Marcel van Herk */
-/* */
-/* date : 19980528 */
-/* */
-/* portability: AVS requires sizeof(void *)==sizeof(int) */
-/* This module assumes sizeof(int)>=4 */
-/* */
-/* notes : */
-/* */
-/* */
-/************************************************************************/
-/* Updates:
-When Who What
-19980528 ljz Copied from mbfield1
-19981209 mvh Taken into action by removing _; added READ_XDR_HEADER
-19981210 mvh+lsp Now proper freeing of buff in case of error
-19990130 mvh Added ENUM_XDR_HEADER
-19990206 mvh Added READ_XDR_PREVIEW
-19990208 mvh Fixed this, the while(1) fgets loop is rquired to skip long headers
-19990406 ljz Removed sizelimit of dimensions
-19991003 mvh Loosened sizelimit for veclen to 1000
-19991005 mvh Remove spaces from AVS own header lines (ndim etc) in scan_header
-20000808 lsp No longer mix file streams and handles
-20000821 ljz Reader can now handle NkiCompression
-20000822 lsp+nd Initialize data and datasize for dots, added "const" to avoid
- writing into a literal string
-20000823 mvh Optimized nki_private_decompression mode 2 (from 6.4 to 4.9 s)
- reading mode 1: compression makes read faster
- reading mode 2: read compressed at same speed as uncompressed
-20000824 mvh Speed up mode 2 to 4.2 s: only check compressedCRC if other failed
- Added some safeties to avoid mode 1 or 2 crash for corrupted data
-20000825 mvh Pass buffer size to nki_private_decompress as extra safety
- Fix mode 1, added full safety against input buffer overflow
- Added some comments and notes
-20010507 mvh Support larger headers when coordinate information has been written
-20010726 mvh Fix for decompression when information is offset in file
-20011207 ljz Removed check on veclen>1000
-20020124 mvh Added test for fields by kg: non-portable types as "integer" then not swapped
-20020903 ljz Made scan_header much faster
-20030122 mvh Fix read of coords in compression mode 2
-20030430 mvh Fix of read coords in compression mode 2 when offset is 0
-20030717 ljz Added support for NkiCompressionModes 3 and 4
-20040426 mvh ELEKTA NKI-XVI0.1 RELEASE
-20050302 mvh Estimate size of compressed data to accelerate speed of reading embedded fields
-20050308 ljz+mvh ELEKTA NKI-XVI0.1j RELEASE
-20071024 mvh Adapted for 64 bits
-20080110 mvh ELEKTA NKI-XVI3.09 RELEASE
-20080414 lsp+mgw __sun__ doesn't know <io.h>
-*/
+// Based on a true story by the Nederlands Kanker Instituut (AVS_RXDR.CPP from the 20080414)
#include <stdio.h>
#include <string.h>
#include <math.h>
WriteImage( m_FileName.c_str(), s, s, 0, -1, 0, 2, 0, 0, 0, 0, buffer);
}
-/************************************************************************/
-/* */
-/* file : AVS_WXDR.C */
-/* */
-/* purpose : AVS module for writing XDR and RAW files */
-/* */
-/* author : Lambert Zijp (based on a true story by */
-/* Marcel van Herk) */
-/* */
-/* date : 19970716 */
-/* */
-/* portability: AVS requires sizeof(void *)==sizeof(int) */
-/* This module assumes sizeof(int)>=4 */
-/* */
-/* notes : This module has been integrated in QUIRT */
-/* */
-/************************************************************************/
-/* Updates:
-When Who What
-19980212 ljz Creation (i.e. Removed from 'mbfield4.c')
-19980304 ljz Added QUIRT_NEXT_PARAMETER_FILE
-19980310 ljz Fix: XDRs were written in text-mode when
- quirt_init() is not called
-19980319 ljz Undone last change: _fmode is set in DllEntryPoint
-19980408 tp Moved M$-specific includes;
- removed AVS portability anyway
-19980611 mvh Added offset to write_raw (write into file)
-20000214 lsp Check file handle returned by open before use
-20000313 nd Two AVSerror messages added.
-20000322 lsp Matched compute func declaration with desc func
-20000630 ljz Added WRITE_RAW_LE, to write little-endian pixel-data
-20000806 lsp Compute func now 'int', conformal to ANSI C++
-20000821 ljz Added NkiCompression parameter to WRITE_XDR. If used,
- mode 2 is recommended.
-20000504 mvh Added write coordinates in header option to WRITE_XDR
-20010720 mvh Added option to write to stdout: pass "" as filename
-20010723 mvh Made it working by redefining write; setmode does not work
-20010725 bb Changed include order of windows.h and mbavs2q.h
- for MS6 compiler.
-20020124 mvh+kg The datatype in the header is now e.g. "xdr_integer"
- The datatypes as "integer" were intended as having native
- byte order, while we wrote bigendian (high byte first). Our
- older files read therefore OK on HP and SUN but not on linux.
-20020124 mvh+kg On AVS5 xdr_byte is illegal. Replace only that one by 'byte'
-20030311 bb Added check on write errors. Disc full errors during a
- write have nasty side-effects for other programs' open files.
- Added check on file handle to prevent closing of stdout.
-20030430 mvh Added append mode for WRITE_XDR
-20030717 ljz Added support for NkiCompressionModes 3 and 4 (4 is recommended)
-20040426 mvh ELEKTA NKI-XVI0.1 RELEASE
-20040910 mvh Write uncompressed and warn if the compress malloc fails, layout
-20040920 mvh Fixed the above option (failed in append mode)
-20040924 mvh Fixed warn in option
-20041117 mvh ELEKTA NKI-XVI0.1g RELEASE
-20050302 ljz Merant tracker ID #1867: Check on bad compression-ratio causing
- access violation.
-20050308 ljz+mvh ELEKTA NKI-XVI0.1j RELEASE
-20050411 mvh Fails on I178_s1_4H.3d mode 1: compression fails and written file corrupted
-20060903 mvh Added WRITE_MEM_XDR and QUERY_MEM_XDR
-20070330 mvh WRITE_XDR failed on G:\20605104_hypo lung\20605104_incl corr+doseab3.PACK
-20071015 mvh ELEKTA NKI-XVI3.08 RELEASE
-20080411 lsp+mw NULL->0 in WriteImage() ; __sun__ doesn't know <io.h>
-20080825 mgw Corrected slash in sys/stat.h include
-20081031 lsp+mvh ELEKTA NKI-XVI4.15 RELEASE
-20081119 lsp+sr Removed tell(f) call for Linux
-20081203 lsp __sun__ -> unix
-20090114 mvh ELEKTA NKI-XVI4.22 RELEASE
-20090529 lsp+sr Work around the 64 MB limitation of write() in Windows
-20090802 mvh ELEKTA NKI-XVI4.29 RELEASE
-20091209 lsp Added WRITE_MEM_RAW
-20091214 lsp 64 bits adaptations: pass high address of buffer as well,
- replaced int by AVSINT when requested, process buffer in chunks
- to be able to interpret return value of write() (signed int) correctly,
- replaced out-of-range constants 0xc0 and 0x80 by their signed equivalents
-20091216 lsp+ljz Prepared compression for more than 4294967295 (UINT_MAX) shorts
- by using bigger NKI_MODE2_64BITS struct (backwards compatible)
-20091216 lsp Disabled #define write for clarity: checked_write() is used throughout
- Use more space for pCompressed to be able to call WRITE_XDR with compression
- on small fields (<10 pixels for mode 2 or 4, <2 pixels for mode 1 and 3)
-*/
-
-/************************************************************************/
-/* MODULE DOCUMENTATION */
-/************************************************************************/
-/*
-AVS Modules Lambert Zijp XDR writer & RAW writer
-
-NAME
- XDR writer - Module for writing XDR and RAW files
-
-SUMMARY
- Name XDR writer
-
- Availability : specify in which module libraries
+// Based on a true story by the Nederlands Kanker Instituut (AVS_WXDR.CPP from the 20091216)
- Source AVS_WXDR (C++ interface)
-
- Type Render / Output
-
- QUIRT name WRITE_XDR & WRITE_RAW
-
- Inputs Input field = field
-
- Outputs none
-
- Parameters Name Type Default Min Max
- File name string
- Header info string (WRITE_XDR only!)
- Header file string (WRITE_XDR only!)
- File Offset integer (WRITE_RAW only!)
- NKI compression integer (WRITE_XDR only!)
- Coords in header boolean (WRITE_XDR only!)
- Append boolean (WRITE_XDR only!)
-
-DESCRIPTION
- WRITE_RAW: No header, no coordinates.
- Data only are written (high byte first); optionally into an
- existing file (if you specify an offset)
-
- WRITE_RAW_LE: No header, no coordinates.
- Data only are written (low byte first);
- optionally into an existing file (if you specify an offset)
-
- WRITE_XDR: Successively is written to file:
- - The string '#AVS wants ...'.
- - The optional Header info
- - The contents of the optional Header file
- - An ascii description of the Input field
- - Optionally the coordinates (coord%axis%[%pixel%]=%coord%)
- (%axis% is 1 based, %pixel% 0 based, %coord% is float)
- - Two bytes containing ascii character 0x0c
- - The Data in binary (high byte first).
- Or, if NKI_Compression is greater than zero, compressed data.
- - The Coordinates in binary IEEE float (high byte first)
-
-INPUTS
- Input field (Required; field)
- Describe input here....
-
-PARAMETERS
- File name
- A string described here....
-
- Header info
- A string described here....
-
- Header file
- A string described here....
-
- File offset
- An integer (default -1). If set, WRITE_RAW writes the data
- into an existing file.
-
- NKI compression
- An integer described here....
-
- Write coordinates in header
- A boolean described here....
-
- Append to file
- A boolean described here....
-
-OUTPUTS
- none
-
-PORTABILITY
- QUIRT, C++
-
-LIBRARIES
- (optional): in which AVS libraries available
-
-TYPE
- Render / Output
- (optional): further specify type of Render / Output module
-
-FILE FORMATS
- (optional): which type of files are read|written
-
-EXAMPLE
- The following network shows how .....
-
- READ IMA
- |
- |
- XDR WRITER
- | |
- | |
-
-LIMITATIONS
- (optional): describe limitations here
-
-RELATED MODULES
- Modules that can provide input:
- .....
- Modules that could be used in place of XDR writer:
- .....
- Modules that can take output:
- .....
-
-RELATED FILES
- (optional): The following files
- {are needed for|are output from|give examples of|further document}
- XDR writer:
- .....
-
-
-QUIRT MANUAL
- WRITE_XDR AVS module XDR writer
- numerical_expression Input field = field
- string_expression name of xdr file to create
- string_expression extra header info (default "")
- string_expression text file with more header info (default none)
- numerical_expression NKI compression (default 0)
- numerical_expression Coordinates in header (boolean, default 0)
- numerical_expression Append to file (boolean, default 0)
-
- WRITE_RAW AVS module Raw writer
- numerical_expression Input field = field
- string_expression name of file to write
- numerical_expression Offset; if not -1 (default) writes into file at offset
-
- WRITE_RAW_LE AVS module Raw writer little endian
- numerical_expression Input field = field
- string_expression name of file to write
- numerical_expression Offset; if not -1 (default) writes into file at offset
-
- WRITE_MEM_XDR
- numerical_expression Input field = field
- numerical_expression point to buffer to write xdr data into (use QUERY_MEM_XDR to find length)
- string_expression extra header info (default "")
- string_expression text file with more header info (default none)
- numerical_expression NKI compression (default 0)
- numerical_expression Coordinates in header (boolean, default 0)
-
- QUERY_MEM_XDR
- numerical_expression Input field = field
- name recieves required length for data
- string_expression extra header info (default "")
- string_expression text file with more header info (default none)
- numerical_expression NKI compression (default 0)
- numerical_expression Coordinates in header (boolean, default 0)
-
-Release 1.0 19980212 Lambert Zijp XDR writer & RAW writer
-*/
/************************************************************************/
/* INCLUDE FILES */
/************************************************************************/
git://git.creatis.insa-lyon.fr / clitk.git / commitdiff