--- /dev/null
+ # ---------------------------------------------------------------------
+ #
+ # Copyright (c) CREATIS (Centre de Recherche en Acquisition et Traitement de l'Image
+ # pour la SantÈ)
+ # Authors : Eduardo Davila, Frederic Cervenansky, Claire Mouton
+ # Previous Authors : Laurent Guigues, Jean-Pierre Roux
+ # CreaTools website : www.creatis.insa-lyon.fr/site/fr/creatools_accueil
+ #
+ # This software is governed by the CeCILL-B license under French law and
+ # abiding by the rules of distribution of free software. You can use,
+ # modify and/ or redistribute the software under the terms of the CeCILL-B
+ # license as circulated by CEA, CNRS and INRIA at the following URL
+ # http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
+ # or in the file LICENSE.txt.
+ #
+ # As a counterpart to the access to the source code and rights to copy,
+ # modify and redistribute granted by the license, users are provided only
+ # with a limited warranty and the software's author, the holder of the
+ # economic rights, and the successive licensors have only limited
+ # liability.
+ #
+ # The fact that you are presently reading this means that you have had
+ # knowledge of the CeCILL-B license and that you accept its terms.
+ # ------------------------------------------------------------------------ */
+
+Basic instructions here.
+Read http://www.creatis.insa-lyon.fr/site/en/CreaTools_home
+or ./kernel/doc/bbtkWebSite/install.html
+for details
+
+
+***********
+** LINUX **
+***********
+
+==== INSTALL ====
+- create a build dir *OUTSIDE* the source tree; go to that dir
+- type :
+> ccmake PATH_TO_SOURCE_TREE
+- switch BUILD_ALL to ON
+- press 'c' at least 10 times !
+- press 'g'
+- type :
+> make
+> su (NOTE: installing as a sudoer usually fails...)
+type root password
+> make install
+> exit
+
+==== GNOME DESKTOP ====
+If you use gnome desktop you can install
+a bbi launcher on desktop and associate it to *.bbs files.
+First, be sure to be logged *WITH YOUR USER NAME, NOT ROOT*
+(otherwise will be installed for root desktop) and type :
+> bbtk-install-gnome
+
+==== UNINSTALL ====
+To uninstall bbtk, type :
+> su (NOTE: uninstalling as a sudoer usually fails...)
+type root password
+> bbtk-uninstall
+
+
+
+*************
+** WINDOWS **
+*************
+
+Visit the web site !
--- /dev/null
+/*
+ # ---------------------------------------------------------------------
+ #
+ # Copyright (c) CREATIS (Centre de Recherche en Acquisition et Traitement de l'Image
+ # pour la SantÈ)
+ # Authors : Eduardo Davila, Frederic Cervenansky, Claire Mouton
+ # Previous Authors : Laurent Guigues, Jean-Pierre Roux
+ # CreaTools website : www.creatis.insa-lyon.fr/site/fr/creatools_accueil
+ #
+ # This software is governed by the CeCILL-B license under French law and
+ # abiding by the rules of distribution of free software. You can use,
+ # modify and/ or redistribute the software under the terms of the CeCILL-B
+ # license as circulated by CEA, CNRS and INRIA at the following URL
+ # http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
+ # or in the file LICENSE.txt.
+ #
+ # As a counterpart to the access to the source code and rights to copy,
+ # modify and redistribute granted by the license, users are provided only
+ # with a limited warranty and the software's author, the holder of the
+ # economic rights, and the successive licensors have only limited
+ # liability.
+ #
+ # The fact that you are presently reading this means that you have had
+ # knowledge of the CeCILL-B license and that you accept its terms.
+ # ------------------------------------------------------------------------ */
+
+/*=========================================================================
+ Program: bbtk
+ Module: $RCSfile: bbitkBinaryThresholdImageFilter.h,v $
+ Language: C++
+ Date: $Date: 2012/11/16 08:50:39 $
+ Version: $Revision: 1.14 $
+=========================================================================*/
+
+/* ---------------------------------------------------------------------
+
+* Copyright (c) CREATIS-LRMN (Centre de Recherche en Imagerie Medicale)
+* Authors : Eduardo Davila, Laurent Guigues, Jean-Pierre Roux
+*
+* This software is governed by the CeCILL-B license under French law and
+* abiding by the rules of distribution of free software. You can use,
+* modify and/ or redistribute the software under the terms of the CeCILL-B
+* license as circulated by CEA, CNRS and INRIA at the following URL
+* http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
+* or in the file LICENSE.txt.
+*
+* As a counterpart to the access to the source code and rights to copy,
+* modify and redistribute granted by the license, users are provided only
+* with a limited warranty and the software's author, the holder of the
+* economic rights, and the successive licensors have only limited
+* liability.
+*
+* The fact that you are presently reading this means that you have had
+* knowledge of the CeCILL-B license and that you accept its terms.
+* ------------------------------------------------------------------------ */
+
+
+#ifdef _USE_ITK_
+
+#include "bbtkAtomicBlackBox.h"
+#include "itkBinaryThresholdImageFilter.h"
+#include "bbtkItkBlackBoxMacros.h"
+#include "bbitkImage.h"
+
+namespace bbitk
+{
+
+ //===================================================
+ template <class T>
+ class /*BBTK_EXPORT*/ BinaryThresholdImageFilter
+ :
+ public bbtk::AtomicBlackBox,
+ public itk::BinaryThresholdImageFilter<T,T>
+ {
+ BBTK_TEMPLATE_BLACK_BOX_INTERFACE(BinaryThresholdImageFilter,
+ bbtk::AtomicBlackBox,T);
+ typedef itk::BinaryThresholdImageFilter<T,T> itkParent;
+ BBTK_DECLARE_ITK_INPUT(In,const T*);
+ BBTK_DECLARE_ITK_PARAM(LowerThreshold,typename T::PixelType);
+ BBTK_DECLARE_ITK_PARAM(UpperThreshold,typename T::PixelType);
+ BBTK_DECLARE_ITK_PARAM(InsideValue,typename T::PixelType);
+ BBTK_DECLARE_ITK_PARAM(OutsideValue,typename T::PixelType);
+ BBTK_DECLARE_ITK_OUTPUT(Out,T*);
+ BBTK_ITK_PROCESS();
+ BBTK_ITK_DELETE();
+
+ };
+ //===================================================
+
+ //===================================================
+ BBTK_BEGIN_DESCRIBE_TEMPLATE_BLACK_BOX(BinaryThresholdImageFilter,
+ bbtk::AtomicBlackBox);
+ BBTK_NAME("BinaryThresholdImageFilter<"+bbtk::TypeName<T>()+">");
+ BBTK_AUTHOR("laurent.guigues@creatis.insa-lyon.fr");
+ BBTK_DESCRIPTION("Binarizes an image by thresholding (bbification of itk::BinaryThresholdImageFilter)");
+ BBTK_TEMPLATE_INPUT(BinaryThresholdImageFilter,In,"Input image",const T*);
+ BBTK_TEMPLATE_INPUT(BinaryThresholdImageFilter,LowerThreshold,
+ "Lower threshold",typename T::PixelType);
+ BBTK_TEMPLATE_INPUT(BinaryThresholdImageFilter,UpperThreshold,
+ "Upper threshold",typename T::PixelType);
+ BBTK_TEMPLATE_INPUT(BinaryThresholdImageFilter,InsideValue,
+ "Output value for pixels inside thresholds",
+ typename T::PixelType);
+ BBTK_TEMPLATE_INPUT(BinaryThresholdImageFilter,OutsideValue,
+ "Output value for pixels outside thresholds",
+ typename T::PixelType);
+ BBTK_TEMPLATE_OUTPUT(BinaryThresholdImageFilter,Out,"Output image",T*);
+ BBTK_END_DESCRIBE_TEMPLATE_BLACK_BOX(BinaryThresholdImageFilter);
+ //===================================================
+
+
+ //===================================================
+ //--
+ template <class T>
+ void BinaryThresholdImageFilter<T>::bbUserSetDefaultValues()
+ {
+ bbSetInputLowerThreshold(0);
+ bbSetInputUpperThreshold(100);
+ bbSetInputInsideValue(255);
+ bbSetInputOutsideValue(0);
+ }
+ template <class T>
+ void BinaryThresholdImageFilter<T>::bbUserInitializeProcessing()
+ {
+ }
+ template <class T>
+ void BinaryThresholdImageFilter<T>::bbUserFinalizeProcessing()
+ {
+ }
+
+ //===================================================
+
+
+
+
+
+
+
+
+
+
+
+ //===================================================
+ // Generic "untemplatized" filter
+ //===================================================
+ class /*BBTK_EXPORT*/ BinaryThresholdImageFilterGeneric
+ :
+ public bbtk::AtomicBlackBox
+ {
+ BBTK_BLACK_BOX_INTERFACE(BinaryThresholdImageFilterGeneric,
+ bbtk::AtomicBlackBox);
+ BBTK_DECLARE_INPUT(In,anyImagePointer);
+ BBTK_DECLARE_INPUT(LowerThreshold,double);
+ BBTK_DECLARE_INPUT(UpperThreshold,double);
+ BBTK_DECLARE_INPUT(InsideValue,double);
+ BBTK_DECLARE_INPUT(OutsideValue,double);
+ BBTK_DECLARE_OUTPUT(Out,anyImagePointer);
+ BBTK_PROCESS(ProcessSwitch);
+ private :
+ inline void ProcessSwitch();
+ template <class T> void Process();
+ };
+ //===================================================
+
+
+ //===================================================
+
+ BBTK_BEGIN_DESCRIBE_BLACK_BOX(BinaryThresholdImageFilterGeneric,
+ bbtk::AtomicBlackBox);
+ BBTK_NAME("BinaryThresholdImageFilter");
+ BBTK_AUTHOR("laurent.guigues at creatis.insa-lyon.fr");
+ BBTK_CATEGORY("filter;image");
+ BBTK_DESCRIPTION("Binarizes an image by thresholding (generic bbification of itk::BinaryThresholdImageFilter)");
+ BBTK_INPUT(BinaryThresholdImageFilterGeneric,In,
+ "Input image. Can be any itk::Image<T,D>*",anyImagePointer,"");
+ BBTK_INPUT(BinaryThresholdImageFilterGeneric,LowerThreshold,
+ "Lower threshold",double,"");
+ BBTK_INPUT(BinaryThresholdImageFilterGeneric,UpperThreshold,
+ "Upper threshold",double,"");
+ BBTK_INPUT(BinaryThresholdImageFilterGeneric,InsideValue,
+ "Output value for pixels inside thresholds",double,"");
+ BBTK_INPUT(BinaryThresholdImageFilterGeneric,OutsideValue,
+ "Output value for pixels outside thresholds",double,"");
+ BBTK_OUTPUT(BinaryThresholdImageFilterGeneric,Out,
+ "Output image. Of the same type and dimension than the input image",
+ anyImagePointer,"");
+ BBTK_END_DESCRIBE_BLACK_BOX(BinaryThresholdImageFilterGeneric);
+ //===================================================
+
+
+
+
+ //===================================================
+
+ void BinaryThresholdImageFilterGeneric::ProcessSwitch()
+ {
+ BBTK_TEMPLATE_ITK_IMAGE_SWITCH(bbGetInputIn().type(), this->Process);
+ }
+ //===================================================
+
+
+ //===================================================
+
+ template <class T>
+ void BinaryThresholdImageFilterGeneric::Process()
+ {
+ bbtkDebugMessageInc("Core",9,
+ "bbitk::BinaryThresholdImageFilterGeneric::Process<"
+ <<bbtk::TypeName<T>()<<">()"<<std::endl);
+
+ typedef BinaryThresholdImageFilter<T> FilterType;
+ typename FilterType::Pointer f = FilterType::New("Temp");
+ typedef T* TPointer;
+ f->bbSetInputIn( this->bbGetInputIn().get < TPointer > () );
+ f->bbSetInputLowerThreshold ( (typename T::PixelType)
+ this->bbGetInputLowerThreshold() );
+ f->bbSetInputUpperThreshold ( (typename T::PixelType)
+ this->bbGetInputUpperThreshold() );
+ f->bbSetInputInsideValue ( (typename T::PixelType)
+ this->bbGetInputInsideValue() );
+ f->bbSetInputOutsideValue ( (typename T::PixelType)
+ this->bbGetInputOutsideValue() );
+ f->bbExecute();
+ f->bbGetOutputOut()->Register();
+ this->bbSetOutputOut( f->bbGetOutputOut() );
+
+ bbtkDebugDecTab("Core",9);
+ }
+
+ //===================================================
+
+
+
+
+
+
+
+
+}
+// EO namespace bbtk
+
+#endif
--- /dev/null
+/*
+ # ---------------------------------------------------------------------
+ #
+ # Copyright (c) CREATIS (Centre de Recherche en Acquisition et Traitement de l'Image
+ # pour la SantÈ)
+ # Authors : Eduardo Davila, Frederic Cervenansky, Claire Mouton
+ # Previous Authors : Laurent Guigues, Jean-Pierre Roux
+ # CreaTools website : www.creatis.insa-lyon.fr/site/fr/creatools_accueil
+ #
+ # This software is governed by the CeCILL-B license under French law and
+ # abiding by the rules of distribution of free software. You can use,
+ # modify and/ or redistribute the software under the terms of the CeCILL-B
+ # license as circulated by CEA, CNRS and INRIA at the following URL
+ # http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
+ # or in the file LICENSE.txt.
+ #
+ # As a counterpart to the access to the source code and rights to copy,
+ # modify and redistribute granted by the license, users are provided only
+ # with a limited warranty and the software's author, the holder of the
+ # economic rights, and the successive licensors have only limited
+ # liability.
+ #
+ # The fact that you are presently reading this means that you have had
+ # knowledge of the CeCILL-B license and that you accept its terms.
+ # ------------------------------------------------------------------------ */
+
+
+//=====
+// Before editing this file, make sure it's a file of your own (i.e.: it wasn't generated from xml description; if so : your modifications will be lost)
+//=====
+#include "bbvtkExtractVtkImageFilter.h"
+#include "bbvtkPackage.h"
+namespace bbvtk
+{
+
+BBTK_ADD_BLACK_BOX_TO_PACKAGE(vtk,ExtractVtkImageFilter)
+BBTK_BLACK_BOX_IMPLEMENTATION(ExtractVtkImageFilter,bbtk::AtomicBlackBox);
+//=====
+// Before editing this file, make sure it's a file of your own (i.e.: it wasn't generated from xml description; if so : your modifications will be lost)
+//=====
+void ExtractVtkImageFilter::Process()
+{
+ int voi[6];
+
+ voi[0] = bbGetInputIndex()[0];
+ voi[1] = bbGetInputIndex()[0]+bbGetInputSize()[0]-1;
+ voi[2] = bbGetInputIndex()[1];
+ voi[3] = bbGetInputIndex()[1]+bbGetInputSize()[1]-1;
+ voi[4] = bbGetInputIndex()[2];
+ voi[5] = bbGetInputIndex()[2]+bbGetInputSize()[2]-1;
+
+ _extract->SetInput( bbGetInputIn() );
+ _extract->SetVOI(voi);
+ _extract->UpdateWholeExtent();
+ _extract->Modified();
+ _extract->Update();
+ bbSetOutputOut(_extract->GetOutput());
+}
+
+//=====
+// Before editing this file, make sure it's a file of your own (i.e.: it wasn't generated from xml description; if so : your modifications will be lost)
+//=====
+void ExtractVtkImageFilter::bbUserSetDefaultValues()
+{
+
+// SET HERE THE DEFAULT INPUT/OUTPUT VALUES OF YOUR BOX
+// Here we initialize the input 'In' to 0
+
+ _extract =NULL;
+
+ bbSetInputIn(0);
+
+ std::vector<int> tmpIndex;
+ tmpIndex.push_back(0);
+ tmpIndex.push_back(0);
+ tmpIndex.push_back(0);
+ std::vector<int> tmpSize;
+ tmpSize.push_back(1);
+ tmpSize.push_back(1);
+ tmpSize.push_back(1);
+ bbSetInputIndex(tmpIndex);
+ bbSetInputSize(tmpSize);
+
+ bbSetOutputOut(0);
+
+}
+//=====
+// Before editing this file, make sure it's a file of your own (i.e.: it wasn't generated from xml description; if so : your modifications will be lost)
+//=====
+void ExtractVtkImageFilter::bbUserInitializeProcessing()
+{
+
+// THE INITIALIZATION METHOD BODY :
+// Here does nothing
+// but this is where you should allocate the internal/output pointers
+// if any
+ _extract = vtkExtractVOI::New();
+
+
+}
+//=====
+// Before editing this file, make sure it's a file of your own (i.e.: it wasn't generated from xml description; if so : your modifications will be lost)
+//=====
+void ExtractVtkImageFilter::bbUserFinalizeProcessing()
+{
+
+// THE FINALIZATION METHOD BODY :
+// Here does nothing
+// but this is where you should desallocate the internal/output pointers
+// if any
+
+ _extract->Delete();
+}
+}
+// EO namespace bbvtk
+
+
--- /dev/null
+/*
+ # ---------------------------------------------------------------------
+ #
+ # Copyright (c) CREATIS (Centre de Recherche en Acquisition et Traitement de l'Image
+ # pour la SantÈ)
+ # Authors : Eduardo Davila, Frederic Cervenansky, Claire Mouton
+ # Previous Authors : Laurent Guigues, Jean-Pierre Roux
+ # CreaTools website : www.creatis.insa-lyon.fr/site/fr/creatools_accueil
+ #
+ # This software is governed by the CeCILL-B license under French law and
+ # abiding by the rules of distribution of free software. You can use,
+ # modify and/ or redistribute the software under the terms of the CeCILL-B
+ # license as circulated by CEA, CNRS and INRIA at the following URL
+ # http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
+ # or in the file LICENSE.txt.
+ #
+ # As a counterpart to the access to the source code and rights to copy,
+ # modify and redistribute granted by the license, users are provided only
+ # with a limited warranty and the software's author, the holder of the
+ # economic rights, and the successive licensors have only limited
+ # liability.
+ #
+ # The fact that you are presently reading this means that you have had
+ # knowledge of the CeCILL-B license and that you accept its terms.
+ # ------------------------------------------------------------------------ */
+
+
+
+#include "bbvtkUpdateRender.h"
+#include "bbvtkPackage.h"
+namespace bbvtk {
+
+ BBTK_ADD_BLACK_BOX_TO_PACKAGE(vtk, UpdateRender)
+ BBTK_BLACK_BOX_IMPLEMENTATION(UpdateRender, bbtk::AtomicBlackBox);
+
+ void UpdateRender::Process()
+ {
+ if(bbGetInputActive())
+ {
+ if (bbGetInputRenderer()!=NULL)
+ {
+ bbGetInputRenderer()->GetRenderWindow()->Render();
+ }
+ } // Active
+ }
+
+ void UpdateRender::bbUserSetDefaultValues() {
+ bbSetInputActive(false);
+ bbSetInputRenderer(NULL);
+ }
+
+ void UpdateRender::bbUserInitializeProcessing() {
+
+ }
+
+ void UpdateRender::bbUserFinalizeProcessing() {
+
+ }
+}
+// EO namespace bbvtk
+
+
git://git.creatis.insa-lyon.fr / bbtk.git / commitdiff