From: dsarrut <david.sarrut@gmail.com>
Date: Mon, 2 May 2011 09:16:49 +0000 (+0200)
Subject: delete duplicate file
X-Git-Tag: v1.2.0^2~3
X-Git-Url: https://git.creatis.insa-lyon.fr/pubgit/?a=commitdiff_plain;h=4b6d68eb5dc8055d11f1354f5059cdf2dace1464;p=clitk.git

delete duplicate file
---

diff --git a/segmentation/clitkReconstructThroughDilationImageFilter.txx b/segmentation/clitkReconstructThroughDilationImageFilter.txx
deleted file mode 100644
index 613f10b..0000000
--- a/segmentation/clitkReconstructThroughDilationImageFilter.txx
+++ /dev/null
@@ -1,173 +0,0 @@
-/*=========================================================================
-  Program:   vv                     http://www.creatis.insa-lyon.fr/rio/vv
-
-  Authors belong to: 
-  - University of LYON              http://www.universite-lyon.fr/
-  - Léon Bérard cancer center       http://oncora1.lyon.fnclcc.fr
-  - CREATIS CNRS laboratory         http://www.creatis.insa-lyon.fr
-
-  This software is distributed WITHOUT ANY WARRANTY; without even
-  the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
-  PURPOSE.  See the copyright notices for more information.
-
-  It is distributed under dual licence
-
-  - BSD        See included LICENSE.txt file
-  - CeCILL-B   http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
-======================================================================-====*/
-#ifndef clitkReconstructThroughDilationImageFilter_txx
-#define clitkReconstructThroughDilationImageFilter_txx
-
-namespace clitk
-{
-
-  //-------------------------------------------------------------------
-  // Update with the number of dimensions
-  //-------------------------------------------------------------------
-  template<class InputImageType, class OutputImageType>
-  ReconstructThroughDilationImageFilter<InputImageType, OutputImageType>::ReconstructThroughDilationImageFilter()
-  {
-   m_Verbose=false;
-   m_BackgroundValue=0;
-   m_ForegroundValue=1;
-   m_ErosionPaddingValue=static_cast<InputPixelType>(-1);
-   for (unsigned int i=0; i<InputImageDimension; i++)
-     m_Radius[i]=1;
-   m_MaximumNumberOfLabels=10;
-  }
-
-
-  //-------------------------------------------------------------------
-  // Update with the number of dimensions and the pixeltype
-  //-------------------------------------------------------------------
-  template<class InputImageType, class  OutputImageType> 
-  void 
-  ReconstructThroughDilationImageFilter<InputImageType, OutputImageType>::GenerateData()
-  {
-
-    //---------------------------------
-    // Typedefs 
-    //--------------------------------- 
-    
-    // Internal type
-    typedef itk::Image<InternalPixelType, InputImageDimension> InternalImageType;
-
-    // Filters used
-    typedef itk::CastImageFilter<InputImageType, InternalImageType> InputCastImageFilterType;   
-    typedef itk::ThresholdImageFilter<InternalImageType> InputThresholdImageFilterType;
-    typedef itk::StatisticsImageFilter<InternalImageType> StatisticsImageFilterType;
-    typedef itk::BinaryBallStructuringElement<InternalPixelType,InputImageDimension > KernelType;
-    typedef clitk::ConditionalBinaryDilateImageFilter<InternalImageType, InternalImageType , KernelType> ConditionalBinaryDilateImageFilterType;
-    typedef itk::DifferenceImageFilter<InternalImageType, InternalImageType> DifferenceImageFilterType;
-    typedef itk::CastImageFilter<InternalImageType, OutputImageType> OutputCastImageFilterType;
-    typedef clitk::SetBackgroundImageFilter<InternalImageType, InternalImageType, InternalImageType> SetBackgroundImageFilterType;
-
-    //---------------------------------
-    // Cast
-    //---------------------------------
-    typename InputCastImageFilterType::Pointer castImageFilter=InputCastImageFilterType::New();
-    castImageFilter->SetInput(this->GetInput());
-    castImageFilter->Update();
-
-    //---------------------------------
-    // Threshold
-    //---------------------------------
-    typename InputThresholdImageFilterType::Pointer thresholdImageFilter=InputThresholdImageFilterType::New();
-    thresholdImageFilter->SetInput(castImageFilter->GetOutput());
-    thresholdImageFilter->ThresholdAbove(m_MaximumNumberOfLabels);
-    thresholdImageFilter->SetOutsideValue(m_ForegroundValue);
-    if(m_Verbose) std::cout<<"Thresholding the input to "<<m_MaximumNumberOfLabels<<" labels ..."<<std::endl;
-    thresholdImageFilter->Update();
-
-    //---------------------------------
-    // Set -1 to padding value
-    //---------------------------------
-    typename SetBackgroundImageFilterType::Pointer setBackgroundFilter =SetBackgroundImageFilterType::New();
-    setBackgroundFilter->SetInput(thresholdImageFilter->GetOutput());
-    setBackgroundFilter->SetInput2(castImageFilter->GetOutput());
-    setBackgroundFilter->SetMaskValue(m_ErosionPaddingValue);
-    setBackgroundFilter->SetOutsideValue(-1);
-    if(m_Verbose) std::cout<<"Setting the eroded region from "<<m_ErosionPaddingValue<<" to -1..."<<std::endl;
-
-    
-    //---------------------------------
-    // Count the initial labels
-    //---------------------------------
-    typename StatisticsImageFilterType::Pointer inputStatisticsImageFilter=StatisticsImageFilterType::New();
-    inputStatisticsImageFilter->SetInput(setBackgroundFilter->GetOutput());
-    if(m_Verbose) std::cout<<"Counting the initial labels..."<<std::endl;
-    inputStatisticsImageFilter->Update();
-    unsigned int initialNumberOfLabels= inputStatisticsImageFilter->GetMaximum();
-    if(m_Verbose) std::cout<<"The input contained "<<initialNumberOfLabels<<" disctictive label(s)..."<<std::endl;
-    unsigned int numberOfConsideredLabels=std::min(initialNumberOfLabels, m_MaximumNumberOfLabels);
-    if(m_Verbose) std::cout<<"Performing dilation the first "<<numberOfConsideredLabels<<" disctictive labels..."<<std::endl;
-
-    //---------------------------------
-    // Dilate while change
-    //---------------------------------
-    typename itk::NumericTraits<InputPixelType>::AccumulateType difference=1;
-    typename InternalImageType::Pointer labelImage=inputStatisticsImageFilter->GetOutput();
-    typename InternalImageType::Pointer oldLabelImage=inputStatisticsImageFilter->GetOutput();
-
-    // element
-    KernelType structuringElement;
-    structuringElement.SetRadius(m_Radius);
-    structuringElement.CreateStructuringElement();
-
-    while( difference)
-      {
-	// Dilate all labels once
-	for ( int label=0; label<(int)numberOfConsideredLabels+1;label++)  
-	  if ( m_BackgroundValue != label)
-	    {
-	      typename ConditionalBinaryDilateImageFilterType::Pointer dilateFilter=ConditionalBinaryDilateImageFilterType::New();
-	      dilateFilter->SetBoundaryToForeground(false);
-	      dilateFilter->SetKernel(structuringElement);
-	      dilateFilter->SetBackgroundValue (-1);
-	      dilateFilter->SetInput (labelImage);
-	      dilateFilter->SetForegroundValue (label);
-	      if(m_Verbose) std::cout<<"Dilating the label "<<label<<"..."<<std::endl;
-	      dilateFilter->Update();
-	      labelImage=dilateFilter->GetOutput();
-	    }
-  
-	// Difference with previous labelImage
-	typename DifferenceImageFilterType::Pointer differenceFilter=DifferenceImageFilterType::New();
-	differenceFilter->SetValidInput(oldLabelImage);
-	differenceFilter->SetTestInput(labelImage);
-	differenceFilter->Update();
-	difference =differenceFilter->GetTotalDifference();
-	if(m_Verbose) std::cout<<"The change in this iteration was "<<difference<<"..."<<std::endl;     
-	oldLabelImage=labelImage;
-      }
-      
-    //---------------------------------
-    // Set -1 to padding value
-    //---------------------------------
-    typename SetBackgroundImageFilterType::Pointer setBackgroundFilter2 =SetBackgroundImageFilterType::New();
-    setBackgroundFilter2->SetInput(labelImage);
-    setBackgroundFilter2->SetInput2(labelImage);
-    setBackgroundFilter2->SetMaskValue(-1);
-    setBackgroundFilter2->SetOutsideValue(m_ErosionPaddingValue);
-    if(m_Verbose) std::cout<<"Setting the eroded region to "<<m_ErosionPaddingValue<<"..."<<std::endl;
-
-    //---------------------------------
-    // Cast
-    //---------------------------------
-    typename OutputCastImageFilterType::Pointer outputCastImageFilter=OutputCastImageFilterType::New();
-    outputCastImageFilter->SetInput(setBackgroundFilter2->GetOutput());
-    if(m_Verbose) std::cout<<"Casting the output..."<<std::endl;
-    outputCastImageFilter->Update();
-
-    //---------------------------------
-    // SetOutput
-    //---------------------------------
-    this->SetNthOutput(0, outputCastImageFilter->GetOutput());
-
-
-  }
-
-
-}//end clitk
- 
-#endif //#define clitkReconstructThroughDilationImageFilter_txx