]> Creatis software - clitk.git/log
clitk.git
13 years agouint is not a type
Simon Rit [Sat, 18 Jun 2011 16:21:53 +0000 (18:21 +0200)]
uint is not a type

13 years agoFix for bug #274: move ExtractSlices definition in .h
Simon Rit [Sat, 18 Jun 2011 16:07:14 +0000 (18:07 +0200)]
Fix for bug #274: move ExtractSlices definition in .h

13 years agoOups, wrong exception message
Simon Rit [Fri, 17 Jun 2011 16:53:45 +0000 (18:53 +0200)]
Oups, wrong exception message

13 years agoResample is not robust to i/o spacings with different signs => launch
Simon Rit [Fri, 17 Jun 2011 16:40:45 +0000 (18:40 +0200)]
Resample is not robust to i/o spacings with different signs => launch
exception

13 years agoThe order of the libraries seemed to cause problem. Changed it...
Simon Rit [Thu, 16 Jun 2011 15:13:33 +0000 (17:13 +0200)]
The order of the libraries seemed to cause problem. Changed it...

13 years agoMerge branch 'master' of /home/dsarrut/clitk3.server
Vivien Delmon [Thu, 16 Jun 2011 09:50:44 +0000 (11:50 +0200)]
Merge branch 'master' of /home/dsarrut/clitk3.server

13 years agoUse Qt variables in vv/CMakeList.txt
Vivien Delmon [Thu, 16 Jun 2011 09:48:39 +0000 (11:48 +0200)]
Use Qt variables in vv/CMakeList.txt

Use ${QT_QTNETWORK_LIBRARY} instead of QtNetwork that didn't worked with
window Qt library named QtNetwork4.lib

13 years agoorientation change should not change T slice
Romulo Pinho [Wed, 15 Jun 2011 15:11:07 +0000 (17:11 +0200)]
orientation change should not change T slice

- time never changes when just the image orientation is changed...

13 years agoFix for bug #609
Simon Rit [Wed, 15 Jun 2011 10:43:05 +0000 (12:43 +0200)]
Fix for bug #609

13 years agoChange key for going to coordinate system origin. Now CTRL+g
Simon Rit [Wed, 15 Jun 2011 08:48:08 +0000 (10:48 +0200)]
Change key for going to coordinate system origin. Now CTRL+g

13 years agoRemoved unused text variable
Simon Rit [Wed, 15 Jun 2011 08:47:36 +0000 (10:47 +0200)]
Removed unused text variable

13 years agoQtNetwork is a required dependency of vvRegisterForm
Simon Rit [Tue, 14 Jun 2011 13:36:30 +0000 (15:36 +0200)]
QtNetwork is a required dependency of vvRegisterForm

13 years agoMerge branch 'master' of /home/dsarrut/clitk3.server
mpech [Tue, 14 Jun 2011 11:27:45 +0000 (13:27 +0200)]
Merge branch 'master' of /home/dsarrut/clitk3.server

13 years agowindows compatibility for tools
mpech [Tue, 14 Jun 2011 11:26:15 +0000 (13:26 +0200)]
windows compatibility for tools
 (size_t vs uint...)
and tests (.lib vs .a)

13 years agoadd QtNetwork for Fedora build
dsarrut [Tue, 14 Jun 2011 11:00:24 +0000 (13:00 +0200)]
add QtNetwork for Fedora build

13 years agoadd QtNetwork for Fedora build
dsarrut [Tue, 14 Jun 2011 10:58:55 +0000 (12:58 +0200)]
add QtNetwork for Fedora build

13 years agoAdd padding in clitkExtractLung
Vivien Delmon [Tue, 14 Jun 2011 08:59:50 +0000 (10:59 +0200)]
Add padding in clitkExtractLung

Add padding around the patient to form one big air area around him.
ExtractLung relies on this assumption which was false for dir-labs
patients cropped around the ribcage.

13 years agoMerge branch 'master' of /home/dsarrut/clitk3.server
Vivien Delmon [Tue, 14 Jun 2011 07:39:28 +0000 (09:39 +0200)]
Merge branch 'master' of /home/dsarrut/clitk3.server

13 years agoAdd test outside SearchForTrackea to avoid infinite loop
Vivien Delmon [Tue, 14 Jun 2011 07:38:15 +0000 (09:38 +0200)]
Add test outside SearchForTrackea to avoid infinite loop

When clitkExtractLung did not find the trackea it looped infinitly.

13 years agoAdd --noAutoCrop option to clitkExtractLung
Vivien Delmon [Tue, 14 Jun 2011 07:35:20 +0000 (09:35 +0200)]
Add --noAutoCrop option to clitkExtractLung

13 years agoRemove comments
dsarrut [Thu, 9 Jun 2011 12:38:42 +0000 (14:38 +0200)]
Remove comments

13 years agoAdd "normalize" and "divide by a scalar"
dsarrut [Thu, 9 Jun 2011 12:36:39 +0000 (14:36 +0200)]
Add "normalize" and "divide by a scalar"

13 years agoMerge branch 'master' of /home/dsarrut/clitk3.server
dsarrut [Thu, 9 Jun 2011 12:35:51 +0000 (14:35 +0200)]
Merge branch 'master' of /home/dsarrut/clitk3.server

13 years agostill on bug 375
Romulo Pinho [Thu, 9 Jun 2011 09:52:31 +0000 (11:52 +0200)]
still on bug 375

- image origin is now also updated to cope with crop

13 years agoMerge branch 'master' of /home/dsarrut/clitk3.server
Simon Rit [Thu, 9 Jun 2011 09:22:51 +0000 (11:22 +0200)]
Merge branch 'master' of /home/dsarrut/clitk3.server

13 years agoUpdating reslice filter information in UpdateDisplayExtent was not enough, calling
Simon Rit [Thu, 9 Jun 2011 09:19:48 +0000 (11:19 +0200)]
Updating reslice filter information  in UpdateDisplayExtent was not enough, calling
AdjustResliceToSliceOrientation does a better job although it should not
be necessary.

13 years agoAdded "Reset transformation to identity" in image right-click menu
Simon Rit [Wed, 8 Jun 2011 15:45:12 +0000 (17:45 +0200)]
Added "Reset transformation to identity" in image right-click menu

13 years agoMerge branch 'master' of /home/dsarrut/clitk3.server
dsarrut [Thu, 9 Jun 2011 05:23:05 +0000 (07:23 +0200)]
Merge branch 'master' of /home/dsarrut/clitk3.server

13 years agosolved bug 375 (Binarize after crop)
Romulo Pinho [Wed, 8 Jun 2011 16:25:37 +0000 (18:25 +0200)]
solved bug 375 (Binarize after crop)

- image index is now forced to zero after passing through cropping filter
        + apparently solved other crop-related bugs... (please test!)
- also did some refactoring and clean-up

13 years agoMerge branch 'master' of /home/dsarrut/clitk3.server
Simon Rit [Wed, 8 Jun 2011 15:44:51 +0000 (17:44 +0200)]
Merge branch 'master' of /home/dsarrut/clitk3.server

13 years agoRemove trailing whitespace
Vivien Delmon [Wed, 8 Jun 2011 15:34:55 +0000 (17:34 +0200)]
Remove trailing whitespace

13 years agoAdd padding in clitkExtractPatient
Vivien Delmon [Wed, 8 Jun 2011 15:31:33 +0000 (17:31 +0200)]
Add padding in clitkExtractPatient

Add padding around the patient to form one big air area around the
patient. ExtractPatient relies on this assumption which was false for
dir-labs patients cropped around the ribcage.

13 years agoRemoved empty file
Simon Rit [Wed, 8 Jun 2011 13:04:46 +0000 (15:04 +0200)]
Removed empty file

13 years agoMerge branch 'master' of /home/dsarrut/clitk3.server
dsarrut [Wed, 8 Jun 2011 05:39:35 +0000 (07:39 +0200)]
Merge branch 'master' of /home/dsarrut/clitk3.server

13 years agoMerge branch 'master' of /home/dsarrut/clitk3.server
Simon Rit [Tue, 7 Jun 2011 15:01:04 +0000 (17:01 +0200)]
Merge branch 'master' of /home/dsarrut/clitk3.server

13 years agosolved bug 442 (2D+t vector field)
Romulo Pinho [Tue, 7 Jun 2011 14:41:18 +0000 (16:41 +0200)]
solved bug 442 (2D+t vector field)

- added another image type: VECTORFIELDWITHTIME

13 years agosolved bug 519 (Fusion flickering)
Romulo Pinho [Tue, 7 Jun 2011 12:46:57 +0000 (14:46 +0200)]
solved bug 519 (Fusion flickering)

13 years agoremoval of threshold test for random point selection
Romulo Pinho [Tue, 7 Jun 2011 10:44:36 +0000 (12:44 +0200)]
removal of threshold test for random point selection

13 years agoremoval of threshold test for point selction
Romulo Pinho [Tue, 7 Jun 2011 08:33:09 +0000 (10:33 +0200)]
removal of threshold test for point selction

13 years agoMerge branch 'master' into blutdirmaster
Romulo Pinho [Tue, 7 Jun 2011 08:04:11 +0000 (10:04 +0200)]
Merge branch 'master' into blutdirmaster

13 years agoMerge branch 'master' of /home/dsarrut/clitk3.server
dsarrut [Tue, 7 Jun 2011 05:27:34 +0000 (07:27 +0200)]
Merge branch 'master' of /home/dsarrut/clitk3.server

13 years agoMerge branch 'master' of /home/dsarrut/clitk3.server
Simon Rit [Mon, 6 Jun 2011 14:26:12 +0000 (16:26 +0200)]
Merge branch 'master' of /home/dsarrut/clitk3.server

13 years agoMerge branch 'master' of /home/dsarrut/clitk3.server
Romulo Pinho [Mon, 6 Jun 2011 12:40:03 +0000 (14:40 +0200)]
Merge branch 'master' of /home/dsarrut/clitk3.server

13 years agoTrasnparency of color maps in fusion images
Romulo Pinho [Mon, 6 Jun 2011 12:38:41 +0000 (14:38 +0200)]
Trasnparency of color maps in fusion images

- finer control of transparency is given through a transparency threshold

13 years agoAdd ComputeLabelMap and Clone
dsarrut [Wed, 1 Jun 2011 11:54:00 +0000 (13:54 +0200)]
Add ComputeLabelMap and Clone

13 years agoMerge branch 'master' of /home/dsarrut/clitk3.server
dsarrut [Wed, 1 Jun 2011 09:17:26 +0000 (11:17 +0200)]
Merge branch 'master' of /home/dsarrut/clitk3.server

13 years agoClean up of unused functions / signals
Simon Rit [Tue, 31 May 2011 15:00:13 +0000 (17:00 +0200)]
Clean up of unused functions / signals

13 years ago[VV] New feature to jump on image origin
Vivien Delmon [Tue, 31 May 2011 14:06:01 +0000 (16:06 +0200)]
[VV] New feature to jump on image origin

13 years agoOnly display data value in corner annotation if ImageActor is visible
Simon Rit [Tue, 31 May 2011 13:07:43 +0000 (15:07 +0200)]
Only display data value in corner annotation if ImageActor is visible

13 years agoAlways UpdateCursorPosition even if ImageActor is not visible, drawing
Simon Rit [Tue, 31 May 2011 13:05:59 +0000 (15:05 +0200)]
Always UpdateCursorPosition even if ImageActor is not visible, drawing
of slicer is handled by the renderer draw mode

13 years agoSetDisplayMode only changes draw mode of renderer
Simon Rit [Tue, 31 May 2011 13:05:17 +0000 (15:05 +0200)]
SetDisplayMode only changes draw mode of renderer

13 years agoRolled back to drawing parent image if it were selected before instead
Simon Rit [Tue, 31 May 2011 12:58:19 +0000 (14:58 +0200)]
Rolled back to drawing parent image if it were selected before instead
of every time parent is changed

13 years agoLet vvSlicer handle visibility
Simon Rit [Tue, 31 May 2011 12:57:57 +0000 (14:57 +0200)]
Let vvSlicer handle visibility

13 years agoMerge branch 'master' of /home/dsarrut/clitk3.server
dsarrut [Tue, 31 May 2011 08:55:43 +0000 (10:55 +0200)]
Merge branch 'master' of /home/dsarrut/clitk3.server

13 years agoMerge branch 'master' of /home/dsarrut/clitk3.server
Simon Rit [Mon, 30 May 2011 17:18:28 +0000 (19:18 +0200)]
Merge branch 'master' of /home/dsarrut/clitk3.server

13 years agoForce visilibty of base image on first click of him or one of his
Simon Rit [Mon, 30 May 2011 17:15:33 +0000 (19:15 +0200)]
Force visilibty of base image on first click of him or one of his
children

13 years agoUndo previous change: the visibility has to change for correct
Simon Rit [Mon, 30 May 2011 17:15:02 +0000 (19:15 +0200)]
Undo previous change: the visibility has to change for correct
interaction

13 years agoMerge branch 'master' of /home/dsarrut/clitk3.server
Simon Rit [Mon, 30 May 2011 16:17:48 +0000 (18:17 +0200)]
Merge branch 'master' of /home/dsarrut/clitk3.server

13 years agoDo not change visilibity of actors when changing renderer drawing action
Simon Rit [Mon, 30 May 2011 15:44:19 +0000 (17:44 +0200)]
Do not change visilibity of actors when changing renderer drawing action

13 years agoMake fusion, overlay and vf visible by default
Simon Rit [Mon, 30 May 2011 15:21:41 +0000 (17:21 +0200)]
Make fusion, overlay and vf visible by default

13 years agoSet colormaps even if corresponding actor is not visible
Simon Rit [Mon, 30 May 2011 15:07:31 +0000 (17:07 +0200)]
Set colormaps even if corresponding actor is not visible

13 years agoRemoved unused and unuseful function
Simon Rit [Mon, 30 May 2011 13:33:16 +0000 (15:33 +0200)]
Removed unused and unuseful function

13 years agoModified DisplayChanged to master the logic of the image tree and
Simon Rit [Mon, 30 May 2011 13:19:28 +0000 (15:19 +0200)]
Modified DisplayChanged to master the logic of the image tree and
correct some bugs. Added comments to facilitate future debugging (there will be some!)

13 years agodebugging messages
Romulo Pinho [Mon, 30 May 2011 12:48:16 +0000 (14:48 +0200)]
debugging messages

13 years agoMerge branch 'master' of /home/dsarrut/clitk3.server
Vivien Delmon [Mon, 30 May 2011 11:59:26 +0000 (13:59 +0200)]
Merge branch 'master' of /home/dsarrut/clitk3.server

13 years agoAdd panel shift in y direction in Cone Beam Project
Vivien Delmon [Mon, 30 May 2011 11:57:42 +0000 (13:57 +0200)]
Add panel shift in y direction in Cone Beam Project

- Add it in the filter.
- Modify the ggo and generic filter to handle it.

13 years agoHandle panel shift in Backprojection
Vivien Delmon [Mon, 30 May 2011 11:54:45 +0000 (13:54 +0200)]
Handle panel shift in Backprojection

Handle panel shift in x and y direction to generate back projected
images.

13 years ago[BUG] use itk interpolator
Vivien Delmon [Mon, 30 May 2011 11:51:55 +0000 (13:51 +0200)]
[BUG] use itk interpolator

Use itk interpolator instead of a home made implementation that
generated NaN in many cases.

13 years agoMerge branch 'master' of /home/dsarrut/clitk3.server
dsarrut [Mon, 30 May 2011 10:41:25 +0000 (12:41 +0200)]
Merge branch 'master' of /home/dsarrut/clitk3.server

13 years agoAdded "image" in actor type for SetActorVisibility and added
Simon Rit [Mon, 30 May 2011 08:40:55 +0000 (10:40 +0200)]
Added "image" in actor type for SetActorVisibility and added
corresponding GetActorVisibility.

13 years agoCorrected tooltip with absolute file path
Simon Rit [Mon, 30 May 2011 08:08:48 +0000 (10:08 +0200)]
Corrected tooltip with absolute file path

13 years agoAccessor to list of filenames
Simon Rit [Mon, 30 May 2011 07:37:23 +0000 (09:37 +0200)]
Accessor to list of filenames

13 years agoUnitialized variable was causing crash at startup on Windows
Simon Rit [Mon, 30 May 2011 07:35:59 +0000 (09:35 +0200)]
Unitialized variable was causing crash at startup on Windows

13 years agoUse OutputDebugString for DD on Windows
Simon Rit [Mon, 30 May 2011 07:35:27 +0000 (09:35 +0200)]
Use OutputDebugString for DD on Windows

13 years agoAdd clitkBool to perform boolean operation
dsarrut [Fri, 27 May 2011 15:35:42 +0000 (17:35 +0200)]
Add clitkBool to perform boolean operation

13 years agosolved bug 457
Romulo Pinho [Fri, 27 May 2011 13:23:45 +0000 (15:23 +0200)]
solved bug 457

- overall, just a matter of calling Render() after updating the contours
- another issue corrected: change of slice orientation didn't change contour orientation
- still existing issue: flickering and delay in contour update when navigating across slices (added to bug tracker)

13 years agoMerge branch 'master' of /home/dsarrut/clitk3.server
Romulo Pinho [Fri, 27 May 2011 10:58:36 +0000 (12:58 +0200)]
Merge branch 'master' of /home/dsarrut/clitk3.server

13 years agoComment unused executable
dsarrut [Fri, 27 May 2011 10:58:04 +0000 (12:58 +0200)]
Comment unused executable

13 years agoMerge branch 'master' of /home/dsarrut/clitk3.server
Romulo Pinho [Fri, 27 May 2011 10:50:23 +0000 (12:50 +0200)]
Merge branch 'master' of /home/dsarrut/clitk3.server

13 years agoRemove warning
dsarrut [Fri, 27 May 2011 10:03:24 +0000 (12:03 +0200)]
Remove warning

13 years agoComment MedianImageFilter
dsarrut [Fri, 27 May 2011 09:35:51 +0000 (11:35 +0200)]
Comment MedianImageFilter

13 years agocomment clitkExtractLymphStations
dsarrut [Fri, 27 May 2011 09:35:25 +0000 (11:35 +0200)]
comment clitkExtractLymphStations

13 years agoAdd AutoCrop
dsarrut [Fri, 27 May 2011 09:28:11 +0000 (11:28 +0200)]
Add AutoCrop

13 years agoRemove debug
dsarrut [Fri, 27 May 2011 09:24:22 +0000 (11:24 +0200)]
Remove debug

13 years agoRemove debug
dsarrut [Fri, 27 May 2011 09:23:55 +0000 (11:23 +0200)]
Remove debug

13 years agoCorrect extrusion (-spacing instead of spacing)
dsarrut [Fri, 27 May 2011 09:23:18 +0000 (11:23 +0200)]
Correct extrusion (-spacing instead of spacing)

13 years agoRemove deltaZ computation
dsarrut [Fri, 27 May 2011 09:22:57 +0000 (11:22 +0200)]
Remove deltaZ computation

13 years agoRemove DeltaZ computation (false)
dsarrut [Fri, 27 May 2011 09:22:43 +0000 (11:22 +0200)]
Remove DeltaZ computation (false)

13 years agosolved bug 457
Romulo Pinho [Thu, 26 May 2011 16:43:29 +0000 (18:43 +0200)]
solved bug 457

- but there's another bug
+ change of orientation does not work

13 years agoMerge branch 'master' of /home/dsarrut/clitk3.server
dsarrut [Thu, 26 May 2011 14:15:29 +0000 (16:15 +0200)]
Merge branch 'master' of /home/dsarrut/clitk3.server

13 years agoMerge branch 'master' of /home/dsarrut/clitk3.server
Romulo Pinho [Thu, 26 May 2011 13:28:19 +0000 (15:28 +0200)]
Merge branch 'master' of /home/dsarrut/clitk3.server

13 years agojust removed some debugging messages
Romulo Pinho [Thu, 26 May 2011 13:28:03 +0000 (15:28 +0200)]
just removed some debugging messages

13 years agoMerge branch 'master' of /home/dsarrut/clitk3.server
maxime Pech [Thu, 26 May 2011 13:17:55 +0000 (15:17 +0200)]
Merge branch 'master' of /home/dsarrut/clitk3.server

13 years agofix crash due to clicking the reload button when we have a cropTool popup opened
maxime Pech [Thu, 26 May 2011 13:17:03 +0000 (15:17 +0200)]
fix crash due to clicking the reload button when we have a cropTool popup opened

13 years agosolved bug 316
Romulo Pinho [Thu, 26 May 2011 13:16:48 +0000 (15:16 +0200)]
solved bug 316

- also refactored the code a bit...

13 years agosolved bug 317
Romulo Pinho [Thu, 26 May 2011 11:15:49 +0000 (13:15 +0200)]
solved bug 317

13 years agoMerge branch 'master' of /home/dsarrut/clitk3.server
Romulo Pinho [Thu, 26 May 2011 11:14:40 +0000 (13:14 +0200)]
Merge branch 'master' of /home/dsarrut/clitk3.server

13 years agomigration gdcm 2.0
Vivien Delmon [Thu, 26 May 2011 11:09:05 +0000 (13:09 +0200)]
migration gdcm 2.0

- Rewrite the RT_Struct reader using gdcm 2.0

13 years agoAdd verboseFile to display the contents of all struct in the dicom file
dsarrut [Thu, 26 May 2011 07:27:32 +0000 (09:27 +0200)]
Add verboseFile to display the contents of all struct in the dicom file

13 years agoDo not seg fault anymore with GDCM1 if the name of the structure does not exist.
dsarrut [Thu, 26 May 2011 06:55:48 +0000 (08:55 +0200)]
Do not seg fault anymore with GDCM1 if the name of the structure does not exist.