From fd4a7d9e81f324f028ba735bdc88f51f4ede5df3 Mon Sep 17 00:00:00 2001 From: Romulo Pinho Date: Thu, 15 Dec 2011 18:43:42 +0100 Subject: [PATCH] motion masks with and without bands --- scripts/create_midP_masks-2.0.sh | 6 ++++-- 1 file changed, 4 insertions(+), 2 deletions(-) diff --git a/scripts/create_midP_masks-2.0.sh b/scripts/create_midP_masks-2.0.sh index eb5983a..5bd0c9f 100755 --- a/scripts/create_midP_masks-2.0.sh +++ b/scripts/create_midP_masks-2.0.sh @@ -119,10 +119,12 @@ create_registration_masks() # echo "$phase_file -> Creating registration masks..." # inside - create_banded_mask $mask_dir_tmp/inside_$phase_nb.mhd $mask_dir_tmp/mm_$phase_nb.mhd $mask_dir_tmp/banded_inside_$phase_nb.mhd $mask_dir_tmp/mask_inside_$phase_nb.mhd 4 + clitkMorphoMath -i $mask_dir_tmp/mm_$phase_nb.mhd -o $mask_dir_tmp/mask_inside_$phase_nb.mhd --type 1 --radius 8 + create_banded_mask $mask_dir_tmp/inside_$phase_nb.mhd $mask_dir_tmp/mm_$phase_nb.mhd $mask_dir_tmp/banded_inside_$phase_nb.mhd $mask_dir_tmp/banded_mask_inside_$phase_nb.mhd 4 # outside clitkExtractPatient -i $mask_dir_tmp/outside_$phase_nb.mhd -o $mask_dir_tmp/mm_outside_$phase_nb.mhd --noAutoCrop - create_banded_mask $mask_dir_tmp/outside_$phase_nb.mhd $mask_dir_tmp/mm_outside_$phase_nb.mhd $mask_dir_tmp/banded_outside_$phase_nb.mhd $mask_dir_tmp/mask_outside_$phase_nb.mhd 4 + clitkMorphoMath -i $mask_dir_tmp/mm_outside_$phase_nb.mhd -o $mask_dir_tmp/mask_outside_$phase_nb.mhd --type 1 --radius 8 + create_banded_mask $mask_dir_tmp/outside_$phase_nb.mhd $mask_dir_tmp/mm_outside_$phase_nb.mhd $mask_dir_tmp/banded_outside_$phase_nb.mhd $mask_dir_tmp/banded_mask_outside_$phase_nb.mhd 4 } mm_preprocessing() -- 2.44.0