1 # CMakeLists for Testing purpose
2 # Cxx file that need a file to run should be place aproprietly
4 SET(CXX_TEST_PATH ${EXECUTABLE_OUTPUT_PATH})
6 SET(GDCM_TESTS ${CXX_TEST_PATH}/gdcmTests)
8 # add test that does not require data:
9 # They usally return if no argument is given
16 TestDicomDirElement.cxx
22 # add tests that require data
24 SET(TEST_SOURCES ${TEST_SOURCES}
25 TestReadWriteReadCompare.cxx # includes generated gdcmDataImages.h
26 PrintAllDocument.cxx # includes generated gdcmDataImages.h
27 TestAllReadCompareDicom.cxx # includes generated gdcmDataImages.h
28 TestAllEntryVerify.cxx # includes generated gdcmDataImages.h
30 TestCopyDicom.cxx # includes generated gdcmDataImages.h
31 TestCopyRescaleDicom.cxx # includes generated gdcmDataImages.h
32 TestDicomDir.cxx # require DICOMDIR
33 BuildUpDicomDir.cxx # writes a file named "NewDICOMDIR"
34 makeDicomDir.cxx # writes a file named "NewDICOMDIR"
37 # add test that require VTK:
39 # Include the VTK library
40 INCLUDE(${VTK_USE_FILE})
43 ${GDCM_SOURCE_DIR}/vtk/
45 SET(TEST_SOURCES ${TEST_SOURCES}
51 ENDIF (GDCM_DATA_ROOT)
57 ${GDCM_SOURCE_DIR}/src/
61 CREATE_TEST_SOURCELIST(Tests gdcmTests.cxx ${TEST_SOURCES})
62 ADD_EXECUTABLE(gdcmTests ${Tests})
64 TARGET_LINK_LIBRARIES(gdcmTests vtkgdcm vtkRendering)
66 TARGET_LINK_LIBRARIES(gdcmTests gdcm)
69 SET (TestsToRun ${Tests})
70 REMOVE (TestsToRun gdcmTests.cxx)
72 # Loop over files and create executables
73 FOREACH(file ${TEST_SOURCES})
74 GET_FILENAME_COMPONENT(name ${file} NAME_WE)
76 # ADD_TEST(${name} ${GDCM_TESTS} ${name}
77 # -D ${GDCM_DATA_ROOT}
78 # -T ${GDCM_BINARY_DIR}/Testing/Temporary
79 # -V Baseline/gdcm/${name}.png)
80 # ELSE (GDCM_DATA_ROOT)
81 ADD_TEST(${name} ${GDCM_TESTS} ${name})
82 # ENDIF (GDCM_DATA_ROOT)
83 ENDFOREACH(file ${TEST_SOURCES})
85 #-----------------------------------------------------------------------------
87 # We need to test the reading of all dicom images in the gdcmData directory
88 # First parse this directory and extract all images
90 IF(${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION} GREATER 1.9)
91 FILE(GLOB GDCM_DATA_IMAGES_GLOB
92 "${GDCM_DATA_ROOT}/*.acr"
93 "${GDCM_DATA_ROOT}/*.dcm"
94 "${GDCM_DATA_ROOT}/*.nema"
95 "${GDCM_DATA_ROOT}/*.ima"
97 FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB
98 "${GDCM_DATA_ROOT}/*FileSeq0.acr"
99 "${GDCM_DATA_ROOT}/*FileSeq0.dcm"
100 "${GDCM_DATA_ROOT}/*FileSeq0.nema"
101 "${GDCM_DATA_ROOT}/*FileSeq0.ima"
103 ELSE(${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION} GREATER 1.9)
104 # Since there is a bug in cmake 1.8.3, I'll have to do two separate globs
105 FILE(GLOB GDCM_DATA_IMAGES_GLOB_ACR
106 "${GDCM_DATA_ROOT}/*.acr"
108 FILE(GLOB GDCM_DATA_IMAGES_GLOB_DCM
109 "${GDCM_DATA_ROOT}/*.dcm"
111 FILE(GLOB GDCM_DATA_IMAGES_GLOB_NEMA
112 "${GDCM_DATA_ROOT}/*.nema"
114 FILE(GLOB GDCM_DATA_IMAGES_GLOB_IMA
115 "${GDCM_DATA_ROOT}/*.ima"
117 SET(GDCM_DATA_IMAGES_GLOB
118 ${GDCM_DATA_IMAGES_GLOB_DCM} ${GDCM_DATA_IMAGES_GLOB_ACR}
119 ${GDCM_DATA_IMAGES_GLOB_NEMA} ${GDCM_DATA_IMAGES_GLOB_IMA})
121 FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB_ACR
122 "${GDCM_DATA_ROOT}/*FileSeq0.acr"
124 FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB_DCM
125 "${GDCM_DATA_ROOT}/*FileSeq0.dcm"
127 FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB_NEMA
128 "${GDCM_DATA_ROOT}/*FileSeq0.nema"
130 FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB_IMA
131 "${GDCM_DATA_ROOT}/*FileSeq0.ima"
133 SET(GDCM_DATA_SEQ_IMAGES_GLOB
134 ${GDCM_DATA_SEQ_IMAGES_GLOB_DCM} ${GDCM_DATA_SEQ_IMAGES_GLOB_ACR}
135 ${GDCM_DATA_SEQ_IMAGES_GLOB_NEMA} ${GDCM_DATA_SEQ_IMAGES_GLOB_IMA})
136 ENDIF(${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION} GREATER 1.9)
138 # Black list of images known to break lots of readers (efilm, xmedcon ...):
140 # serial killer (also segfaults vtkgdcmViewer, but NOT PrintFile)
141 #"gdcm-JPEG-LossLessThoravision.dcm"
143 # Mathieu: temporarily remove as it kills my gnome session (but not kde)
144 # JPR: also breaks TestReadWriteReadCompare : Pixel differ (as expanded
146 #"KODAK-12-MONO1-Odd_Terminated_Sequence.dcm"
148 # Multiframe Papyrus format image
149 # Just to remember this format exist, and is gdcm::Header compliant
150 # (NOT gdcm::File ...)
151 # any contribution is welcome
152 "PET-cardio-Multiframe-Papyrus.dcm"
156 # Add a special test that requires dciodvfy from dicom3tools
157 INCLUDE(${GDCM_SOURCE_DIR}/FindDicom3Tools.cmake)
159 # This is a GLOB expression, change it into a list separated with a comma and \n
160 SET(GDCM_DATA_IMAGES)
161 FOREACH(filename ${GDCM_DATA_IMAGES_GLOB})
162 GET_FILENAME_COMPONENT(filename_temp ${filename} NAME)
164 ADD_TEST("Clunie-${filename_temp}" "${DCIODVFY_EXECUTABLE}" "${filename}")
165 ENDIF(DCIODVFY_FOUND)
166 STRING(REGEX MATCH ${filename_temp} bad_dicom ${BLACK_LIST})
168 SET(GDCM_DATA_IMAGES "${GDCM_DATA_IMAGES}\n\"${filename_temp}\",")
172 SET(GDCM_DATA_SEQ_IMAGES)
173 FOREACH(filename ${GDCM_DATA_SEQ_IMAGES_GLOB})
174 GET_FILENAME_COMPONENT(filename_temp ${filename} NAME)
175 STRING(REGEX MATCH ${filename_temp} bad_dicom ${BLACK_LIST})
177 STRING(REGEX REPLACE "(.*)FileSeq0(.*)" "\\1FileSeq%d\\2" filename_temp2 ${filename_temp})
179 SET(GDCM_DATA_SEQ_IMAGES "${GDCM_DATA_SEQ_IMAGES}\n\"${filename_temp2}\",")
183 # Populate GDCM_DATA_IMAGES:
184 FILE(WRITE "${GDCM_BINARY_DIR}/gdcmDataImages.h"
185 "const char * const gdcmDataImages[] = { ${GDCM_DATA_IMAGES}\n0 };\n"
188 # Populate GDCM_DATA_SEQ_IMAGES:
189 FILE(WRITE "${GDCM_BINARY_DIR}/gdcmDataSeqImages.h"
190 "const char * const gdcmDataSeqImages[] = { ${GDCM_DATA_SEQ_IMAGES}\n0 };\n"