1 2004-02-04 Benoit Regrain
2 * FIX : sort the images in the dicom dir
3 * FIX : Bug fix for python use of dicom dir
6 2004-02-04 Jean-Pierre Roux
7 * FIX : Final solution (?) for icone embedded images
8 * FIX : dicomVR.dic Overlay group is not *only* 6000, but 60xxx
9 (see http://medical.nema.org/dicom/2003/03_06PU.PDF)
10 add groups 6002, 6004, 6006, to allow 'clean' parsing of
11 gdcmData/gdcm-MR-SIEMENS-16.acr1
12 * ENH add gdcmData/checkWriteExplicit.sh gdcmData/checkWriteImplicit.sh
13 to make full checking easier
15 2004-02-04 Benoit Regrain
16 * FIX : WriteEntries : coding style & logic in parameters
17 * FIX : Set the elements to create the DicomDir in a dictionary file
19 2004-02-03 Benoit Regrain
20 * gdcmDirList : to parse a hard drive directory in recursive (or not)
21 * gdcmDicomDir : add the load of directory
22 * Bug fix and print add-on
24 2004-02-03 Jean-Pierre Roux
25 * ENH gdcmParser : allows "DICM" files, with NO group '0002'
26 * FIX handling 'non string elements' unsecure area (LUT, overlays, etc)
27 * FIX Dicts/dicomV3.dic : Add a few missing 'group length' Elements
28 * FIX gdcmParser.cxx : 'group length' elements are now considered
29 as integers, even for shadow groups, when file is Implicit VR
31 2004-02-02 Jean-Pierre Roux
32 * FIX : gdcmWrite : equal_range() for multimap doesn't return a 'second'
34 of the last synonym :-(
35 * FIX : gdcmWrite::WriteBase : method stops if Pixels not yet Read (except
37 * ENH gdcmData/checkWrite.sh :modif for full check of Explicit VR writting
38 * FIX taking into account the possible 7fe0,0010 multiplicity
39 * FIX add GRPixel,NumPixel,countGrPixel (gdcmParser protected members)
40 to allow removal of references to 7fe0,0010, to deal with
41 ACR-NEMA images, when 0028,0200 is meaningfull
43 2004-01-31 Jean-Pierre Roux
44 * FIX gdcmParser::WriteEntries : when a VR is tagged as 'Unknown'
45 no longer writes 'Un' on disk
46 * FIX SQ elements with actual length are now dealt with corectly
47 * FIX gdcmFile::WriteBase make the difference, for color images, between
48 the length (for Palette expanded omages)
49 and Raw Length (non expanded image + Palette)
50 * FIX Dicts/dicomV3.dic : removal of 'CTX' (context dependant) VR
51 (that broke Write). Replaced by UL.
52 Aware user will reload the field if he
53 thinks it's necesssary
55 2004-01-30 Jean-Pierre Roux
56 * gdcmParser::CheckSwap() now defaults the filetype to ACR
57 when 'dirty Acr' is found, to be compliant with the new
60 * gdcmHeaderHelper :add Pixel Type 'FD', for dealing with 'double' images.
61 (no DOUBLE images in kosher DICOM,
62 but so usefull for people that miss them ;-)
64 * add Test/testDicomDir.cxx, Test/makeDicomDir.cxx , Test/explDICOMDIR.cxx
65 DICOMDIR related utilities (not checked as Windoze compliant)
67 2004-01-28 Jean-Pierre Roux
68 * upgrade GdcmHeaderEntry Print Method for DICOMDIR
70 2004-01-27 Jean-Pierre Roux
71 * gdcmParser constructor has a new boolean param,'ignore_shadow',
72 to allow skipping the shadow elements, to save memory space.
73 The TRUE value for this param has to be used
74 with a FALSE value for the 'enable_sequence' param.
75 ('public elements' may be embedded in 'shadow Sequences')
76 * gdcmHeader methods now deal with 'embedded icones images' in the header
77 (even when an 'icone image sequence' is announced by the
78 element (0x0088,0x0200), but there is NO icone at all ...
80 * gdcmHeader sometimes Image Location value doesn't follow
81 the supposed processor endianity (see gdcmData/cr172241.dcm).
84 * gdcmHeader add the method
85 IterHT GetHeaderEntrySameNumber(grPixel,numPixel);
86 to get *all* the Header Entries with the same tag.
87 GetHeaderEntrySameName is probabely *useless*
88 (no meaning : Name is *not* an identifier within the Dictionnary)
90 2004-01-26 Benoit Regrain
91 * Bug fix in the print of hexadecimal representations. Remove long fields
92 in the print and add a third level of print to print them
94 2004-01-23 Benoit Regrain
95 * Bug fix on field having a VR = 'UI'. Assume that is a string field
96 * Bug fix on test suite after remove the strip made on not string fields
97 * Split the IsReadable method between gdcmParser which test that the file
98 is dicom and gdcmHeader which test that it's an image file
100 2004-01-22 Benoit Regrain
101 * DicomDir : clean code, add methods, set variables in protected or private
102 * gdcmUtil : bug fix for the clean string method
104 2004-01-19 Benoit Regrain
105 * Add the use of shadow dictionaries
106 * bug fix and coding style
108 2004-01-19 Benoit Regrain
109 * src/gdcmFile.cxx : bug fix concerning the close of file
110 * src/gdcmParser.[h|cxx] : remove obvious Pub informations
111 * Add the update of header entries using the shadow library
113 2004-01-19 Benoit Regrain
114 * removal of file gdcmHeader2.cxx
115 * split class gdcmHeader into gdcmParser and gdcmHeader, with gdcmHeader
116 inheriting from gdcmParser. This split is to prepare the integration
118 * bug fix under python
120 2004-01-16 Jean-Pierre Roux
121 * removal of class gdcmHeaderEntrySet
122 * removal of files gdcmHeaderEntrySet.cxx, gdcmHeaderEntrySet.h
123 * add file gdcmHeader2.cxx
124 * add method gdcmHeader::SetPrintLevel (for PrintHeader)
126 2004-01-15 Benoit Regrain
127 * src/gdcmDicSet.[h|cxx] : add virtual entries to have a reference of
128 entries created while parsing the header. Thus, they will be destroyed
129 when the gdcmDictSet will be destroyed
130 * src/gdcmHeader.cxx, gdcmHeaderEntrySet.cxx : uses virtual entries of
133 2004-01-15 Benoit Regrain
134 * vtk/vtkGdcmReader.cxx : bug fix : before, with python only, the program
135 made a fatal error because of the memory release at the end of program.
136 The problem was in vtkGdcmReader::ExecuteData where we were allocate
137 some memory and vtk seems to have some problems with that.
138 * src/gdcmHeaderEntrySet.cxx : bug fix for std lib and cout
140 2004-01-14 Benoit Regrain
141 * src/gdcmHeaderEntry.[h|cxx] : gdcmElValue -> gdcmHeaderEntry
142 * src/gdcmHeaderEntrySet.[h|cxx] : gdcmElValSet -> gdcmHeaderEntrySet
143 * src/*.[h|cxx] : make changes due to class name changes
144 * gdcmPython/demo/*.py : bug fix due to method names
146 2004-01-13 Benoit Regrain
147 * src/*.[h|cxx] : coding style
148 * vtk/*.[h|cxx] : coding style
150 2004-01-13 Benoit Regrain
151 * gdcmPython/testSuite.py : test the readable flag of file for tests
152 * src/gdcmDict.cxx, gdcmElValSet.cxx : bug fix under windows for prints.
153 It's lied to the stl compilation by MSVC (windows, always windows...)
154 * src/gdcmIdo.h, gdcmHeaderIdo.cxx : remove the Ido unused files
156 2004-01-12 Benoit Regrain
157 * src/*.h : add comments
158 * src/gdcmDictSet.h : set the method BuildDictPath in public
159 * src/gdcmTS.cxx, gdcmVR.cxx : use now a dictionnary file other than to be
160 directly setted in the source code
161 * Dicts/dicomTS.dic, dicomVR.dic : 2 new dictionnary files loaded by
164 2004-01-09 Benoit Regrain
165 * gdcmPython/gdcmVersion.py : add a gdcmVERSION variable information
166 * setup.py : use a reference to gdcmVERSION
168 2004-01-07 Benoit Regrain
169 * Modification to compile with the distutils.
172 2003-12-10 Benoit Regrain
173 * gdcmHeader is now aggregating gdcmFile, and not derived into. Thus, we
174 can use a gdcmHeaderHelper to load datas
175 * gdcmPython/testSuite.py : make the testSuite compliant with modifications
176 made in the source code
178 2003-12-10 Benoit Regrain
179 * Update Windows projects and .cvsignore files
181 2003-11-12 Jean-Pierre Roux
182 *ENH gdcmHeader constructor has one more parameter (default value : false)
183 that allows the user to 'go inside' the SeQuences only
185 gdcmElValSet:Print takes it into account
187 2003-11-12 Mathieu Malaterre <Mathieu.Malaterre@creatis.insa-lyon.fr>
188 *ENH: Update gdcmPython/CMakeLists
189 *FIX: (gdcmHeaderHelper) GetRescale and GetSlope
190 *FIX: (gdcmElValSet) char 'tag' was overiding private members (VC++)
192 2003-11-10 Jean-Pierre Roux
193 *FIX : gdcmHeader::LoadElements is now based
194 on the ListTag listElem member,
195 not longer on the TagElValueHT tagHt member
196 *ENH : PrintPubElVal shows (temporarily) both results,
197 with the tagHt member and the listElem member.
198 (it's easier to 'see' the problems when using Printheader)
200 *FIX : old private member LgrElem is now splitted into
201 ReadLength : Length actually found on disk (updated only
202 if bug fixing is necessary), for internal
204 UsableLength : Updated by FixFoundLength, to fix a bug
205 or to allow Parser going on.
206 Will allow to re-write a kosher header when a SeQuence
207 with a length (not 0000) is found
208 Warning : gdcmFile::Write still uses the TagHt (not ListElem)
209 because gdcmElValSet::Add does not update ListElem
212 2003-11-07 Jean-Pierre Roux
213 *FIX misstyping in Transfert Syntax name table
214 *ENH gdcmHeader::FixFoundLength now allow to 'go inside' tge SeQuences
215 when they have an actual length (not 0000 nor FFFFF)
216 (Nobody should care of it, but DICOMDIR explorers)
218 2003-11-06 Mathieu Malaterre <Mathieu.Malaterre@creatis.insa-lyon.fr>
219 *ENH: vtkgdcmViewer now works with LUT dicom (OT-PAL-face ...)
221 2003-11-05 Mathieu Malaterre <Mathieu.Malaterre@creatis.insa-lyon.fr>
222 *ENH: vtkGdcmReader now supports LUT !
223 (vtkgdcmViewer for now is not able to use them though)
225 2003-11-05 Jean-Pierre Roux
226 * in testSuite.py : new files names for checking the package
227 * Fix : Forgot to commit gdcmFile::GetImageDataSizeRaw();
228 that returns the pixel area size to the *aware* (vtk) user
229 that DOESN'T want to turn the PALETTE COLOR image into an RGB image
231 2003-11-05 Benoit Regrain
232 * in testSuite.py : Modify the rules for checking the paths
233 : Explicit error messages
234 * in __init__.py : Related modif
236 2003-11-03 Jean-Pierre Roux
237 * add gdcmHeaderHelper::GetNumberOfScalarComponentsRaw()
238 to be used by aware (vtk) users that want to manage
239 LUT (and no to turn the PALETTE image into an RGB pixels one)
240 * GetPixelType now returns 8U for 24 Bits images
241 (vtkGdcmReader compliant)
243 2003-10-31 Jean-Pierre Roux
244 * Removal of *all* gdcmData images and add them again
245 in order to loose the 'history' of un-anonymised images
247 2003-10-31 Jean-Pierre Roux
248 *RMV : removal of useless jBitsInJsample.h
249 for both 8 and 12 Bits JPEG Lossy Libraries
251 2003-10-31 Jean-Pierre Roux
252 * ENH : Add the functions gdcmFile::GetImageDataRaw
253 gdcmFile::GetImageDataIntoVectorRaw
254 that act as GetImageData and GetImageDataIntoVector
255 except the making of an RGB Plane from Gray Plane + LUT
256 Intended to aware (vtk) users who know how to manage
259 GetLUTRGBA return a R,G,B,A LUT if any
260 lgrTotaleRaw gives the 'Raw' length
261 GetImageDataRaw returns the gray Plane
262 * FIX : no more dirty trick for 'Segmented xxx Palette Color Lookup' images
263 (They stay Grey, just like with other Dicom viewers :-(
265 2003-10-30 Jean-Pierre Roux
266 * FIX : a VC++ intended syntax modif broke the 12/12 Bytes expanding
268 2003-10-29 Mathieu Malaterre <Mathieu.Malaterre@creatis.insa-lyon.fr>
269 *ENH: Can be used like this '$vtkgdcmViewer *.dcm' with *.dcm
270 being coherents dicom files.
272 2003-10-29 Mathieu Malaterre <Mathieu.Malaterre@creatis.insa-lyon.fr>
273 *FIX: DOH ! Forgot about windo$e users, they couldn't read lossless jpeg,
275 *ENH: Turn it into DOS file type to match libgdcmijpeg8.dsp file type
276 *ENH: Two steps is necessary to please VC++ compiler...
277 *FIX: DOH ! libgdcmijpg8 -> libgdcmljpeg
278 *ENH: Add include dir to medcon lib
279 *FIX: only one function is being exported for now !
280 You should use GLOBAL(return type) see ljpg/jpeg.h for more info
282 2003-10-29 Jean-Pierre Roux
283 * adding gdcmHeader::GetLUTRGBA
284 returns a 4 * 256 Bytes Reg/Green/Blue/Alpha vtk compliant LUT
285 --> Mathieu, the modif u're waiting for is not yet committed
286 * removal of now useless GetLUTRed,GetLUTGreen,GetLUTBlue,GetLUTRGB
288 2003-10-27 Jean-Pierre Roux
289 * adding some xmedcon breaker files (courtesy of Loïc Boussel)
290 . 00191113.dcm DermaColorLossLess.dcm
291 MxTwinLossLess.dcm RadBWLossLess.dcm
292 * ENH: For version prior to vtkImageViewer2 -r 1.19
293 * FIX: avoid pb with xmedcon-breaker CT McTwin Elscint images
295 2003-10-27 Mathieu Malaterre <Mathieu.Malaterre@creatis.insa-lyon.fr>
296 * Removal of ido stuff in CMakeLists.txt
298 2003-10-24 Mathieu Malaterre <Mathieu.Malaterre@creatis.insa-lyon.fr>
299 * ENH: vtkGdcmReader.cxx can now read multiframe dicom
300 * FIX: remove a call to ->Modified ... see comments
301 * FIX: vtkgdcmViewer.cxx was writting ASCII file...this is so slooooooow !
303 2003-10-23 Mathieu Malaterre <Mathieu.Malaterre@creatis.insa-lyon.fr>
304 * FIX: Problem with path for libvtkgdcmPython
305 * ENH: Try adding a search script for python site-package
306 * RMV: Remove some file from medcon lib that are not necessary
307 * FIX: gdcm/Makefile.am fix for generating ljpg medcon
308 * ENH: CMakeLists.txt now generate 'pygdcm.so' instead of 'libpygdcm.so'
309 * FIX: More pragma disable fro VC++,
310 I don't think I break something as it is also disable in VTK/ITK.
311 But it fasten debug compilation time.
313 2003-10-23 Jean-Pierre Roux
314 * gdcm now deals with 16 Bits Run Length Encoded images
315 (they are compressed as 2 planes images,
316 one for the high Bytes, the other for low Bytes)
318 2003-10-22 Jean-Pierre Roux
319 * Now CheckRead takes into account :
320 the bugged 'Leonardo' Siemens images
321 the XA images, sent thru the burning VPRO station
322 * add I9000001.dcm, a GE dlx XA image, thru the VEPRO burning station
325 2003-10-22 Mathieu Malaterre <Mathieu.Malaterre@creatis.insa-lyon.fr>
326 * FIX: When copying a Makefile.am to CMakeLists.txt
327 one should remove the '\'
329 2003-10-22 Jean-Pierre Roux
330 * in gdcmData adding a bugged 'Leonardo' Siemens image
331 (wrong lengths in header)
332 OK with gdcm, KO with the other viewers :-)
333 * add a GE dlx XA image, thru the VEPRO burning station
336 2003-10-21 Jean-Pierre Roux
337 * in gdcmData add the checkvtkgdcmViewer.sh shell script
338 for a brutal checking of vtkgdcmViewer compliance
340 2003-10-21 Jean-Pierre Roux
341 * add the files for 'xmedcon' Jpeg Lossless library
342 * call of 'xmedcom' Jpeg Lossles libray (instead of the old LibIDO one)
344 2003-10-21 Jean-Pierre Roux
345 * 'Compacted Files' (12 Bits Allocate, 12 Bits Stored) are now dealt with
347 2003-10-21 Jean-Pierre Roux
348 * garbage Siemens 'Leonardo' images dealt with
349 (the patch is easy to remove)
350 * cosmetic changes to avoid warnings
352 2003-10-20 Mathieu Malaterre <Mathieu.Malaterre@creatis.insa-lyon.fr>
353 * ENH: vtkgdcmViewer now autoscale color/window level on start-up,
354 no need to press 'r' now.
356 2003-10-20 Jean-Pierre Roux
357 * upgrade of checkRead.sh checkWrite.sh according
358 to new Jpeg Lossless decompressor
359 * add US.3405.1.dcm, a genuine RGB medical file ...
360 * add gdcm-ACR-LibIDO.acr, unnormalized Rectangular LibIDO format image
361 * add CLIP0001-Sequoia-U11.dcm, US 'Clip', from SEQUOIA machine,
363 2003-10-15 Jean-Pierre Roux
364 * general anonymisation in gdcmData
365 * adding the 'color files' from
366 http://www.leadtools.com/SDK/Medical/DICOM/ltdc19.htm
367 * adding some well knowed bugged-header images
368 * adding checkRead.sk, checkReadColor.sh, checkWrite.sh,
369 waiting for their inclusion in Python testsuite
371 2003-10-15 Jean-Pierre Roux
372 * gdcmHeader::gdcmHeader(const char *InFilename, bool exception_on_error)
373 no longer seg faults when file is not found
375 2003-10-14 Jean-Pierre Roux
376 * Emprovement of reading for Dicom encapsulated Jpeg LossLess MultiFrame images
378 2003-10-14 Mathieu Malaterre <Mathieu.Malaterre@creatis.insa-lyon.fr>
379 * TODO: *.in file to genereate a UseGDCM later
381 2003-10-14 Jean-Pierre Roux
382 * Some supposed-to-be Dicom Images have no preamble.
383 OpenFile takes it into account
384 * Jpeg LossLess 24 Bits images doesn't break any longer gdcm
385 * Missing elements added in dicomV3.dic
386 (just to be affraid : have a look at
387 ftp://medical.nema.org/medical/dicom/2003/01v03dif/01v03_06.pdf
388 and do it again next year ;->
390 2003-10-13 Jean-Pierre Roux
391 * According to PS 3.3-2003 C.11.1.1.2 p 619, when each pixel of
392 a PALETTE COLOR is stored on 2 Bytes, theese 2 Bytes must be equal.
393 But there are NOT. It's fixed !
395 2003-10-13 Mathieu Malaterre <Mathieu.Malaterre@creatis.insa-lyon.fr>
396 * FIX: "jpeglib.h" was not found on VC++
397 * FIX: vtkgdcm was not being installed
399 2003-10-10 Jean-Pierre Roux
400 * ENH : OpenFile closes the file if it *really* doesn't look like
401 an ACR-NEMA / DICOM one.
402 * FIX : testWrite no longer writes an empty file if the source file
404 * ENH : One more JPEG LossLess type "JPEG Baseline (Process 14)"
407 2003-10-10 Mathieu Malaterre <Mathieu.Malaterre@creatis.insa-lyon.fr>
408 * FIX: CMake generate now documentation
409 * ENH: out of source doc build !
410 * ENH: Generate both user and dev documentation
411 * ENH: Should work on windows too
412 * ENH: Only one doxygen config.in file is needed
413 * FIX: make install should be ok now on ùnix plateform
414 * FIX: PATH to dictionary was wrong (missing /)
415 * ENH: OpenFile, return true if the file looks like an ACR or DICOM file
417 2003-10-09 Mathieu Malaterre <Mathieu.Malaterre@creatis.insa-lyon.fr>
418 * vtkGdcmReader is now able to read rgb dicom file.
419 * src/gdcmHeaderHelper : GetNumberOfScalarComponents()
420 * added a gdcmViewer to vtk test, use mouse to control
421 window level & window width
423 2003-10-09 Mathieu Malaterre <Mathieu.Malaterre@creatis.insa-lyon.fr>
424 * CMake-ification of gdcm, we have now two build system
425 * FIX: on cygwin Wsock32 doesn't exist
426 * FIX: force jpeg dir to the local one (gdcm/src/jpeg)
428 2003-10-06 Emanuel Ollart
429 * FIX : compilation process wad broken.
430 Changed gdcmViewer_sources to vtkgdcmViewer_sources
432 2003-10-06 Mathieu Malaterre <Mathieu.Malaterre@creatis.insa-lyon.fr>
433 * change gdcmViewer -> vtkgdcmViewer
434 * change GetXSpacing and GetYSpacing "%f\\%" is parsed backward
436 2003-10-06 Jean-Pierre Roux
437 * FIX :A few nasty patches to allow the reading of a lot of nasty images
438 ( e.g : well known GE images with a wrong elem length,
439 : Philips MRI Images with a wrong Huffman table)
440 * still to be done : allow the reading of bugged LEONARDO Siemens images
442 2003-10-03 Jean-Pierre Roux
443 * Odd length strings are padded with '\0' (not with spaces,
444 to remain compliant with already defined strings,
445 like Transfert Syntax UID and others)
447 2003-10-03 Jean-Pierre Roux
448 * ENH :gdcmHeaderHelper::GetNumberOfScalarComponents() added,
449 to allow displaying RGB images (not only by affim ;-)
451 2003-10-03 Mathieu Malaterre <Mathieu.Malaterre@creatis.insa-lyon.fr>
452 * vtkGdcmReader is now able to read rgb dicom file.
453 * src/gdcmHeaderHelper : GetNumberOfScalarComponents()
455 2003-10-03 Jean-Pierre Roux
456 * A few nasty patches to allow the reading of a lot of nasty images
457 ( e.g : well known GE images with a wrong elem length,
458 : Philips MRI Images with a wrong Huffman table)
459 * still to be done : allow the reading of bugged LEONARDO Siemens images
461 2003-10-03 Jean-Pierre Roux
462 * One more JPEG LossLess type "JPEG Baseline (Process 14)" is now decoded.
464 2003-10-03 Jean-Pierre Roux
465 * gdcmHeaderHelper::GetNumberOfScalarComponents() added,
466 to allow displaying RGB images (not only by affim ;-)
468 2003-10-03 Jean-Pierre Roux
469 * gdcmFile::GetImageDataIntoVector now
470 - deals with MultiFrames MultiFragments Run Length Encoded files
471 - deals with YcBcR (YBR_FULL) files
472 - deals with YBR_YBR_FULL_422 files (they work as RBG files ?!?)
473 WARNING : nothing was checked for YBR_PARTIAL_422, YBR_ICT, YBR_RCT files.
476 2003-10-02 Mathieu Malaterre <Mathieu.Malaterre@creatis.insa-lyon.fr>
477 * src/*.cxx removed pragma thingies to src/gdcmCommon.h
478 Two reasons: - clear things
479 - third parties acces gdcm through header files, so won't
480 suffer anymore VC++ complains
481 2003-09-30 Mathieu Malaterre <Mathieu.Malaterre@creatis.insa-lyon.fr>
482 * add argv[1] in testvtkGdcmReader.cxx
485 2003-09-24 Jean-Pierre Roux
486 * The lines are now eigthy characters long.for
487 gdcmHeader.cxx gdcmHeaderHelper.cxx gdcmParse.cxx
489 2003-09-22 Benoit Regrain <Benoit.Regrain@creatis.insa-lyon.fr>
490 * src/gdcmUtil.[cxx|h] : change the _CreateCleanString return value from
491 char* to std::string. Thus, the use of strdup becomes useless. (see
492 previous commis of Malaterre)
493 * src/gdcmElValSet.cxx : reuse commented call to _CreateCleanString like
494 before the last Malaterre's commit.
496 2003-09-19 Mathieu Malaterre <Mathieu.Malaterre@creatis.insa-lyon.fr>
497 * This commit should fix the Debug building under VC++, the problem
498 was mainly a mixture of debug and release lib being loaded at startup.
499 * I also remove a depency to a specific C function: strdup. Because I had
500 to force the link to msvcrtd (whereas strdup is in libc).
502 2003-09-16 Benoit Regrain <Benoit.Regrain@creatis.insa-lyon.fr>
503 * "gdcm::Unfound" string changed to a constant variable (GDCM_UNFOUND)
504 located in the gdcmCommon.h file. All use of reference of tha has been
505 changed to now use the variable GDCM_UNFOUND.
507 2003-09-16 Eric Boix <Eric.Boix@creatis.insa-lyon.fr> with JPR
509 - gdcmPython/testSuite.py adapted to the JPR updated Dicts/dicomV3.dic
510 Dicom dictionary. The test suite can now be run again. Note:
511 I'm note very happy with the " (RET)" changes. I believe this
512 RETAINED comment should be dropped when parsing the dictionary.
515 - AUTHORS updated and now in alphabetical order
516 * Makefile.am now exports gdcm.dsw for Windoze users.
518 2003-09-11 Mathieu Malaterre <Mathieu.Malaterre@creatis.insa-lyon.fr>
519 * cygwin complains about missing std:: in subdir Test/
521 2003-09-10 Mathieu Malaterre <Mathieu.Malaterre@creatis.insa-lyon.fr>
522 * remove some methods that are now in gdcmHeaderHelper
524 2003-09-10 Mathieu Malaterre <Mathieu.Malaterre@creatis.insa-lyon.fr>
525 * vtkGdcmReader set spacing and origin correctly
527 2003-09-09 Mathieu Malaterre <Mathieu.Malaterre@creatis.insa-lyon.fr>
528 * Fix a few delete/delete[] mismatch
530 2003-09-08 Mathieu Malaterre <Mathieu.Malaterre@creatis.insa-lyon.fr>
531 * src/gdcmHeaderHelper.[h cxx]: added new class that provide an
532 interpretation to data given by gdcmHeader. For instance there are
533 heuristics to get informations (look at different places).
534 * it also include a specific class: gdcmSerieHeaderHelper devoted to
535 sorting DICOM images based on different strategies.
536 * modified Makefiles accordingly.
538 2003-09-05 Mathieu Malaterre <Mathieu.Malaterre@creatis.insa-lyon.fr>
539 * src/*.cxx : added pragma disable 4786/4251 to get rid of ~4300 warning
540 when building in debug mode
541 * vtk/win32/vtkgdcm.dsp : change /MT -> /MD and /MTd -> /MDd to match
542 src/win32/gdcmdll.dsp
543 * vtk/win32/vtkgdcm.dsp : added /nodefaultlib "mscvrt" for debug mode
545 2003-08-29 Mathieu Malaterre <Mathieu.Malaterre@creatis.insa-lyon.fr>
546 * Corrected a leak in vtkGdcmREader.cxx, the pSource was find thanks to valgrind.
548 2003-07-29 Mathieu Malaterre <Mathieu.Malaterre@creatis.insa-lyon.fr>
549 * src/win32/libgdcmjpeg12.dsp was not dos format
550 * src/win32/libgdcmjpeg12.dsp : libgdcmijpeg12_EXPORTS -> LIBGDCMIJPEG12_EXPORTS
551 * src/win32/gdcmdll.dsp: + /I "..\jpeg\libijg12"
553 2003-07-29 Benoit Regrain <Benoit.Regrain@creatis.insa-lyon.fr>
554 * src/gdcmHeader.h : add std:: prefix for stl elements... like others in
556 * src/gdcmFile.cxx : bug fix in affectation type
557 * src/jpeg/libijpeg12/jmorecfg12.h : export for windows modified... like
558 in src/jpeg/libijpeg8/jmorecfg8.h (JPR : copy/paste exists !!!)
559 * Modifs of MVSC projects to compile them. Not concerning 2 identic
560 symbols... future problem ?
562 2003-07-29 Mathieu Malaterre <Mathieu.Malaterre@creatis.insa-lyon.fr>
563 * src/win32/libgdcmijpeg12.dsp was missing
564 * modified gdcm.dsw accordingly
566 2003-07-28 Mathieu Malaterre <Mathieu.Malaterre@creatis.insa-lyon.fr>
567 * src/gdcmHeader.cxx : misplaced return 0.; for ACR/NEMA
569 2003-07-24 Benoit Regrain <Benoit.Regrain@creatis.insa-lyon.fr>
570 * src/jpeg/libijg12/.cvsignore, jconfig.* : ommited files while last
571 commit of JPR (before his hollidays to facilitate our work).
572 * setup.py : bug fix in code. Modifications made while the last commit
573 of JPR. The code hasn't been tested before the commit... it's so
574 useless to make that (for best programmer that is JPR) !!!
576 2003-07-08 Eric Boix <Eric.Boix@creatis.insa-lyon.fr>
577 * tagged the current version as Version0_3 (i.e. version 0.3)
579 2003-07-08 Benoit Regrain <Benoit.Regrain@creatis.insa-lyon.fr>
580 * vtk/testvtkGdcmReader.cxx : remove a symbol that is unused
581 * src/jpeg/libijg8/jmorecfg.h : adding export symbol for windows
582 * *.dsp : modifications to use new libgdcmijpeg8 library
583 * setup.py : bug fix on VTKPATH variable
584 * PACKAGER : adding all concerning windows
586 2003-07-07 Eric Boix <Eric.Boix@creatis.insa-lyon.fr>
587 * src/gdcmElValSet.cxx, gdcmFile.cxx: JPR bug fix, removal of
589 * TODO, vtk/vtkGdcmReader.cxx: upcoming fixes comments.
590 * gdcmPython/testSuite.py: JPR bug fix, brutal erasement of
591 test suite reported error.
592 * PACKAGER file added (describes what a packager must do when
593 packaging a new release).
594 * MANIFEST.in, now declares jconfig.linux and jconfig.vc
595 * configure.in: upgraded version number to 0.3.0
596 * fixing build of rpm (through rpm -ta):
597 - Doc/Makefile.am exports proper doxygen files
598 - src/jpeg/libijg8/Makefile.am exports the include files.
600 2003-07-07 Benoit Regrain <Benoit.Regrain@creatis.insa-lyon.fr>
601 * vtk/vtkGdcmReader.cxx : bug fix when loading only 1 file.
602 * src/gdcmHeader.h : formatting code
604 2003-07-07 Benoit Regrain <Benoit.Regrain@creatis.insa-lyon.fr>
605 * vtk/vtkGdcmReader.[cxx|h] : bug fix when loading only one file.
606 We were obtaining error message from vtk. Now, creation of file list
607 is made in an internal list to prevent this problem.
608 Bug fix when output is empty.
609 Bug fix in update of progress value. Previous commit for this was a bad
611 * vtk/vtkGdcmReader.h : adding comments for InternalFileNaleList variable
613 2003-07-04 Benoit Regrain <Benoit.Regrain@creatis.insa-lyon.fr>
614 * src/gdcmHeader.h : added method to get the file name
615 * vtk/vtkGdcmReader.[cxx|h] : bug fix concerning loading of bad dicom
616 files. Added method to remove all files on the input
617 Added FIXME comment concerning the bad parsing of header made by
618 ExecuteInformation method (in ExecuteData method)
620 2003-07-03 Eric Boix <Eric.Boix@creatis.insa-lyon.fr>
621 * vtk/Makefile.am: vtkGdcmReader.h should now be cleany installed
622 when using make instal.
623 * src/gdcmFile.cxx : bug fix under Window after JPR commit
624 RQ : the JPR doesn't appear in the ChangeLog... normal for him
626 2003-07-03 Benoit Regrain <Benoit.Regrain@creatis.insa-lyon.fr>
627 * setup.py : adding include dir of jpeg lib to compile all sources
628 * */Win32/*.dsp : JPR fix for windows compilation
630 2003-07-02 Benoit Regrain <Benoit.Regrain@creatis.insa-lyon.fr>
631 * src/jpeg/libijg8/jconfig.* : JPR bug fix : now compile on both
633 * src/gdcmJpeg.cxx : JPR bug fix : erroneous include
634 * src/win32/gdcmdll.dsp : JPR fix for windows compilation
636 2003-07-02 Eric Boix <Eric.Boix@creatis.insa-lyon.fr>
637 * setup.py is again effective on un*x (takes into account the
638 addon of the jpeg library)
639 * Doc/DoxyDevelInstal.txt added (developper's raw documentation)
640 * Doc/Doxy* updated (includes above enhancements)
641 * INSTALL now points to web documentation
643 2003-07-01 Eric Boix <Eric.Boix@creatis.insa-lyon.fr>
644 * src/gdcmHeader.h doesn't make unnecessary reference to
646 * gdcmPython/Makefile.am now avoids calling the wrappers for the
648 * src/gdcm*.[cxx|h] :
649 - to allow compilation with gcc 3.x
650 -- clean up of STL usage (added explicit usage of std::)
651 -- small fixes on exceptions.
652 Note: linking not tested !
653 - clean of doxygen comments to avoid warnings at documentation
655 * vtk/vtkGdcmReader.cxx: g++ warning message clean up (platform
656 dependent convertion).
658 2003-06-20 Eric Boix <Eric.Boix@creatis.insa-lyon.fr>
659 * Clean up of previous JPR garbage commit (not even commented in the
661 - Test/Makefile.am removed the reference to unexisting testTS.cxx
662 - moved all jpeg related files from src to src/jpeg/libijg8, with
663 addition/modification of Makefile.am and configure.in.
664 - the testSuite is still brain damage (not guilty).
666 2003-06-02 Benoit Regrain <Benoit.Regrain@creatis.insa-lyon.fr>
667 * WrapVTK.py : modifications to get correctly vtk source files to
669 * vtk/vtkGdcmReader.cxx : modification for an already existing name
670 (FileName -> Filename)
672 2003-06-11 Eric Boix <Eric.Boix@creatis.insa-lyon.fr>
673 * vtk/vtkGdcmReader.[cxx/h]:
674 - UpdateProgress method should now be effective
675 - removed the limitation on having only images loaded (as opposed
677 - when building a stack of images/volume, a lesser number of
678 gdcmHeader and gdcmFile instances should be used (hopefully
679 accelerating things).
680 - when building a stack of images/volumes, files which are not
681 loadable (wrong path-filename, wrong permissions on existing file,
682 or file not parsable by gdcm) are replaced with a black image
683 in the stack (for the caller to notice the problem).
685 2003-06-03 Eric Boix <Eric.Boix@creatis.insa-lyon.fr>
686 * vtk/vtkGdcmReader.cxx: hopefully corrected Z extent.
688 2003-06-02 Benoit Regrain <Benoit.Regrain@creatis.insa-lyon.fr>
689 * vtk/vtkGdcmReader[cxx|h] : makes correct code to remove conflicts
690 between standard library (std) and vtk library (problems are found
691 under Windows... thanks Windows !)
693 2003-05-30 Eric Boix <Eric.Boix@creatis.insa-lyon.fr>
694 * vtk/vtkGdcmReader[cxx|h] should now be volume aware (read ready for
696 * gdcmPython/demo/vtkGdcmReader.py: commented lines for volume test
698 2003-05-29 Eric Boix <Eric.Boix@creatis.insa-lyon.fr>
699 * vtk/vtkGdcmReader[cxx|h] preparation addons for loading volumes.
701 2003-05-28 Eric Boix <Eric.Boix@creatis.insa-lyon.fr>
702 * When compiling with distutils (see setup.py) the C++ compiler is
703 called with different flags than the default ones (with automake).
704 In order to fix all those warning, I compiled gdcm with the command
705 make 'CXXFLAGS=-Wall -Wstrict-prototypes -D__STDC_LIMIT_MACROS'
706 and went for warning fixes:
707 - src/gdcmHeader.cxx, Test/dcm2acr.cxx, pourFindTaggs.cxx cleaned
708 up from unused variables.
709 - vtk/vtkGdcmReader.cxx: potential bug fix.
710 * src/gdcmHeader.h: Doxygen warning cleanup
712 2003-05-27 Eric Boix <Eric.Boix@creatis.insa-lyon.fr>
714 - typemaps correction to take into account the systematic replacement
715 of "using namespace std" with std:: prefix e.g. std::list,
716 std::string... (cf changes of 2003-05-21).
717 - gdcmGlob global variable of type gdcmGlobal (defined in
718 src/gdcmUtil.cxx and declared in gdcmPython/gdcm.i) is now
719 exported to Python a as cvar.
720 * gdcmPython/__init__.py now defines two functions GetPubDictTagNames()
721 and GetPubDictTagNamesByCategory() as a replacement for deprecated
722 gdcmDictSet.GetPubDictTagNames() and
723 gdcmDictSet.GetPubDictTagNamesByCategory() class functions (i.e.
725 * gdcmPython/demo/printGroupedPublicDict.py is operational again,
726 with the above changes.
728 2003-05-22 Benoit Regrain <Benoit.Regrain@creatis.insa-lyon.fr>
729 * setup.py, manifest.in : bug fix under linux
731 2003-05-22 Benoit Regrain <Benoit.Regrain@creatis.insa-lyon.fr>
732 * Modification of setup.py to compile vtk part too. Then, we have 2
733 wrappers which must work with same distutils. For that, we have a
734 generic distutils in distusiltsWrapping.py ; with :
735 - build_extWrap class to wrap generically all extensions,
736 - ExtensionWrap base class for all wrapping extension that contains
738 - Wrapper interface which wrap sources
739 + In WrapSwig.py we have extension and wrapper for Swig
740 + In WrapVTK.py we have extension and wrapper for VTK
741 * MANIFEST.in : modifications to consider vtk directory and new python
742 files for compilation
744 2003-05-21 Eric Boix <Eric.Boix@creatis.insa-lyon.fr> with Benoit Regrain
745 * Added python wrappers of vtkGdcmReader vtk class (see the
746 source in vtk/vtkGdcmReader.cxx) :
747 - vtk/Makefile.am now builds a library
748 - gdcmPython/Makefile.am now builds vtkgdcmPython a second import
749 python library (as opposed to _gdcm.so wich are the python
750 wrappers of gdcm). vtkgdcmPython.so uses the vtk python wrappers
751 (vtkWrapPython and vtkWrapPythonInit utility) to build vtkgdcmPython
753 - configure.in has an additional flag --enable-vtk that needs
754 to be set to enable compilation of vtk related code, that is:
755 + vtk/vtkGdcmReader.so and
756 + vtk/testvtkGdcmReader C++ demo of vtk wrappers of gdcm)
757 + gdcmPython/vtkgdcmPython.so (see above)
758 - gdcmPython/demo/vtkGdcmDemo.py corrected (some images cannot
759 be read when compressed or when HighBit + 1 != BitsStored),
760 - gdcmPython/demo/vtkGdcmReader.py added. This demo illustrates
761 the usage of the python wrapper of vtkGdcmReader vtk class.
762 * vtk/vtkGdcmReader.cxx: bug fixed (thanks to Benoit Regrain).
763 * src/*.[h] all occurences of stl classes are now prefixed with
764 std::, and all occurences of "using namespace std;" where removed.
765 This is to avoid pollution of global namespace in included files.
766 Apparently vtk does not avoid this pitfall: when using both
767 gdcm and vtk (as in vtk/vtkGdcmReader.cxx) this ended up in a
768 collision of various stl members (principally cout...).
769 * gdcmPython/testSuite.py now cleanly removes temprory generated
771 * gdcmPython/gdcm.i now declares a typemap for std::string (to
772 comply with above changes)
774 2003-05-12 Eric Boix <Eric.Boix@creatis.insa-lyon.fr> with JPR
775 * src/gdcmHeader>[h/cxx] added gdcmHeader::GetPixelSize()
776 * vtk/vtkGdcmReader.cxx now properly inports the image in the
777 vtk data structure (an image Flip was required).
778 * vtk/testvtkGdcmReader.cxx refers to gdcmData subdir instead of Data.
779 * cosmetic changes in documentation.
781 2003-05-7 Eric Boix <Eric.Boix@creatis.insa-lyon.fr> with JPR
782 * src/gdcmHeader.cxx: the constructor no longer exits when an
783 unexisting file is given as argument.
784 * The subdirectory Data (containing all the images used for the
785 test suite) is not part of this repository anymore. A new module
786 containing those images is now available at
787 :pserver:xxx@cvs.creatis.insa-lyon.fr:2402/cvs/public
788 with the name gdcmData.
789 All the python scripts (including the package initialisation file
790 gdcmPython/__init__.py) were adapated to take this change into
791 account (basically GDCM_DATA_PATH is now GDCM_TEST_DATA_PATH).
793 2003-05-5 Eric Boix <Eric.Boix@creatis.insa-lyon.fr> with JPR
794 * vtk subdir added. Contains vtkGdcmReader.[cxx|h] a vtk class
795 inherinting from vtkImageReader and testvtkGdcmReader.cxx a small
796 demo of the usage of this class.
797 Compilation of this vtk part is only done when using the --enable-vtk
798 at configure (or autogen.sh) stage.
800 2003-04-16 Eric Boix <Eric.Boix@creatis.insa-lyon.fr> with JPR
801 * More memory link related corrections and documentation fixes.
803 - maximum info is obtained with a command of the form:
804 valgrind --leak-check=yes --leak-resolution=high --num-callers=40
805 --show-reachable=yes PrintHeader
806 - the remaining reachable blocks seem to come from the STL
807 allocation scheme through the usage of map and list. It looks
808 like this memory cannot be freed but it is not a memory leak
809 (in fact further invocation to the STL would recollect the
810 unused memory allthough it cannot explicitely be freed).
811 * gdcmPython/demo/vtkGdcmDemo.py added: this is a small demo
812 of displaying an image parsed with gdcm and displayed with VTK.
813 Note: some images don't seem to work e.g.
814 python vtkGdcmDemo.py ../../Data/US-RGB-8-esopecho.dcm
815 * src/gdcmHeader.x: dicom_vr and Dicts are not class members anymore.
816 Allthough this weakens the semantics, it is a ditch attempt to
817 make gdcm more thread friendly.
819 2003-04-15 Eric Boix <Eric.Boix@creatis.insa-lyon.fr> with JPR
820 * Memory link hunt (by using valgrind through the command
821 valgrind --show-reachable=yes --leak-check=yes PrintHeader).
822 - added src/gdcmVR.cxx gdcmVR.h that objectify the previous
823 gdcmHeader::_dicom_vr.
824 - gdcmHeader::InitVRDict transfered as gdcmVR::gdcmVR().
825 - gdcmHeader::dicom_vr is now of type gdcmVR* as opposed to
827 - gdcmGlobal global object contained class added (see src/gdcmUtil.x)
829 2003-04-9 Eric Boix <Eric.Boix@creatis.insa-lyon.fr> with JPR
830 * src/Makefile.am now exports all the necessary include files at
834 * UpdateGroupLength replaced by new one
837 * UpdateGroupLength re-written using H-Table
838 (named UpdateGroupLengthNew untill checks are over)
840 2003-04-7 Eric Boix <Eric.Boix@creatis.insa-lyon.fr> with JPR
841 * Data/im_00001 renamed to gdcm-MR-PHILIPS-16-Multi-Seq.dcm
842 * gdcmPython/testSuite.py now include a test of gdcmFile::Write.
844 - gdcmHeader::GetPubElValSet removed.
845 - gdcmElValSet::WriteDcm, WriteAcr, WriteExplVR, revamped to
846 UpdateGroupLength, WriteElements, Write.
847 - gdcmHeader::FileType moved to gdcmCommon.h. The enum FileType
848 doesn't contain TrueDicom anymore since ExplicitVR and ImplicitVR
849 carried the same semantics.
850 - src/gdcmHeaderIdo.cxx changed accordingly.
851 - gdcmFile::WriteBase now regroups all the codes from previous
852 versions of WriteDcm, WriteDcmImplVR, and WriteACR.
853 - enum FileType moved to gdcmCommon.h
854 * src/gdcmHeader.cxx AddDefault trashed
856 * getimageDataSize now calls gdcmGetXSize
857 * Test/*.cxx changed to agree with above changes
859 2003-03-31 Eric Boix <Eric.Boix@creatis.insa-lyon.fr>
860 * src/gdcmHeader.h: LoadElements() is not a public method anymore
861 (to avoid double call by end user).
862 * Test/*.cxx LoadElements() doesn't need to be called explicitely
863 by end user, since gdcmHeader::gdcmHeader now handles it.
865 2003-03-29 Eric Boix <Eric.Boix@creatis.insa-lyon.fr>
866 * gdcm/Doc many doxygen changes:
867 - Doxyfile now has two different versions, DoxyfileUsers that generates
868 the html.users end users oriented documentation and
869 DoxyfileDeveloppers that generates the html.developper developper
870 oriented documentation.
871 - README changed accordingly
872 - requirement.txt removed (old design info moved to TODO).
873 - Additional files DoxyInstallation.txt, DoxyIntroduction.txt,
874 DoxyMainPage.txt, DoxyPython.txt provide more information.
875 - Note: the website http://www.creatis.insa-lyon.fr/Public/Gdcm/ can now
876 be updated by simply regenerating the docs with doxygen and copying
877 html.developper and html.users to tux:/home/httpd/html/Public/Gdcm
878 * src/gdcmElValSet.cxx: stl <map>.count() can only return 0 or 1. Hence
879 all the tests in the form "if (<map>.count() >1)" were removed.
880 * src/gdcmFile.cxx: cosmetic changes to avoid messages of doxygen about
881 ill-formed documentation sections.
882 * src/gdcmHeader.cxx: ditto
884 2003-03-27 Eric Boix <Eric.Boix@creatis.insa-lyon.fr>
885 * setup.py fixed for un*x (needed macro for stdint.h)
886 * Test/test.cxx renamed to PrintHeader.cxx to avoid collision on
887 un*ces with sh-utils test utility.
888 * gdcmPython/demo/test.py renamed to PrintHeader.py
889 * gdcmPython/demo/ReorganiseFiles.py new demo script added.
890 * gdcmPython/win32/gdcmpycomplet.dsp renamed to gdcmpyembedded.dsp.
891 * gdcmPython/win32/gdcmpy.dsp trashed away (brain damaged).
892 * src/gdcm*.cxx JPR's bad inclusion fixed.
894 2003-03-26 Eric Boix <Eric.Boix@creatis.insa-lyon.fr>
895 * src/gdcmHeader[h, cxx] gdcmHeader now has an IsReadable predicate.
896 * gdcmPython/demo/test.py changed accordingly.
898 2003-03-25 Eric Boix <Eric.Boix@creatis.insa-lyon.fr>
899 * gdcmPython/Makefile.am fixed linking against libstdc++
900 * gdcmPython/_gdcm.so symbolic link to gdcmPython/.libs/pygdcm.so added.
901 * Swig subdir (historical tests of swig version 1.3.17++) removed
902 * Test/testChangeEntete.cxx some lines commented out in order to make
904 * src/gdcmHeader.cxx cleaned up wild JPR's dirty kludge.
905 * src/gdcmElValSet.cxx cleaned up frog's forgotten debug message
907 2003-03-24 Eric Boix <Eric.Boix@creatis.insa-lyon.fr>
908 * src/gdcmHeader.cxx gdcmHeader::gdcmHeader now calls LoadElements(),
909 hence the user doesn't need this explicit call.
910 - gdcmPython/testSuite.py, gdcmPython/demo/*.py changed accordingly
911 i.e. LoadElements() call removed.
912 * src/gdcmCommon.h now defines UINT32_MAX (see stdint.h).
913 - src/Makefile.am declares the proper flag for g++.
914 * src/gdcmElValSet.h added gdcmElValSet::GenerateFreeTagKeyInGroup
915 for adding user defined new tags.
916 - src/gdcmHeader.cxx gdcmHeader::NewManualElValToPubDict added.
917 - src/gdcmHeader.cxx gdcmHeader::AddAndDefaultElements now
918 cleanly adds some gdcm added tags (like gdcmXSize, gdcmYSize...)
920 2003-03-17 Fabrice Bellet <Fabrice.Bellet@creatis.insa-lyon.fr>
921 * Makefile.am, acinclude.m4, configure.in, python.m4, Dicts/Makefile.am,
922 Doc/Makefile.am, Test/Makefile.am, gdcmPython/Makefile.am,
923 src/Makefile.am : the project should properly compile and install
924 with the autotools, included the python wrappers part.
925 * gdcm.spec.in : added a spec file for RPM packaging.
927 2003-03-14 Benoit Regrain <Benoit.Regrain@creatis.insa-lyon.fr>
928 * src/gdcmUtils.cxx : redifinition of defaults parameters in code
930 2003-03-12 Eric Boix <Eric.Boix@creatis.insa-lyon.fr>
931 * gdcmPython/__init__.py fix of GDCM_DICT_PATH which was not
932 to exported to the environement (see gdcmPython/testSuite.py
934 * src/gdcmElValSet.[cxx/h], gdcmElValue.[cxx/h], gdcmFile.[cxx/h],
935 gdcmHeader.[cxx/h]: ElValSet class renamed to gdcmElValSet, and
936 ElValue class renamed to gdcmElValue for obvious consistency reasons.
937 * src/gdcmElValSet.cxx, src/gdcmUtil.[cxx-h] Tokenize utility function
938 moved away from gdcmElValSet.cxx to gdcmUtil.cxx.
940 2003-03-10 Eric Boix <Eric.Boix@creatis.insa-lyon.fr>
941 * gdcmPython/__init__.py doesn't crash anymore when running in
942 in InstallMode or PreInstallMode but with an environement given
943 value of GDCM_DICT_PATH.
944 * src/gdcmDictSet.[cxx/h] coding style.
946 2003-03-06 Eric Boix <Eric.Boix@creatis.insa-lyon.fr>
947 * src/gdcmHeader.h and gdcmHeader.cxx Coding style + doxigenation.
948 * src/gdcm.h general comments moved to TODO, and README
949 * src/gdcm.h should now be seen as a user commodity (including it
950 should suffice to fully use gdcm). It is nowhere including within
951 any of the kernel files src/*.cxx and src/*.h.
953 2003-03-05 Eric Boix <Eric.Boix@creatis.insa-lyon.fr>
954 * src/gdcm.h splitted in gdcmCommon.h, gdcmDict.h, gdcmDictEntry.h,
955 gdcmDictSet.h, gdcmElValSet.h, gdcmElValue.h, gdcmFile.h,
957 * src/gdcm*.cxx only include their corresponding include file
958 (as opposed to gdcm.h)
959 * gdcmPython/gdcm.i changed accordingly
960 * Test/Makefile.am corrected and added NEWS, AUTHORS in order for
961 the autogen.sh generated "make snapshot" command to work.
962 * autogen.sh removed history related references to crea package.
964 2003-03-04 Eric Boix <Eric.Boix@creatis.insa-lyon.fr>
965 * distutilsSwigCPlusPlus.py work around some swig portability
968 2003-03-03 Eric Boix <Eric.Boix@creatis.insa-lyon.fr>
969 * Eventually, python/gdcmPython was renamed to gdcmPython. This
970 was done in a last ditch attempt to get setup.py _really_
971 operationnal. The python/gdcmPython layaout add the advantage
972 of hidding away the python related distutils specific files
973 (MANIFEST.in, setup.py, distutils*.py...) from the main directory.
974 Alas, the src directory was out of scope (i.e. it's relative
975 position to setup.py was ../src) which made things impossible to
976 handle (see previous version of python/setup.py). Crossing fingers...
978 2003-02-20 Eric Boix <Eric.Boix@creatis.insa-lyon.fr>
979 * python/setup.py now works on Un*x. (harder than I thougth)
980 * python/distutilsSwigCPlusPlus.py can now have include files
981 among the list of sources.
983 2003-02-20 Benoit Regrain <Benoit.Regrain@creatis.insa-lyon.fr>
984 * src/gdcmHeader.cxx : bug fix - opening dicom file in binary !!!
985 * modifications in MSVC projects
987 2003-02-19 Eric Boix <Eric.Boix@creatis.insa-lyon.fr>
988 * As stated by the first lines of Test/ExceptionAndPython/README, it
989 looks like we can move back to original usage of exception within
990 src/gdcm* and hence remove the errno stuff that was introduced
991 as a quick and dirty fixture of this problem (added to the TODO).
992 * Doc/Doxyfile configuration file for Doxygen and corresponding
993 README file for usage added.
994 * Test/testWrite.cxx added. This new test comes from a split of
995 test.cxx that is now reverted to its original purpous i.e.
996 testing the proper parsing of a Dicom related file.
997 testWrite.cxx concentrates on testing the IO part of gdcm.
998 * Test/bug1.cxx (containing a bug on WIn32) added.
999 * src/gdcm.h, gdcmHeader.cxx, gdcmDictSet.cxx:
1000 - gdcmHeader::GetPubTagNames and gdcmHeader::GetPubTagNamesByCategory
1001 whose purpose is to publish the content of the TagNames of the
1002 Dicom public dictionnary were not accessible without an
1003 instance of class gdcmHeader.
1004 - those methods are now static methods of gdcmDictSet and hence
1005 require no instances at all to be invocated.
1006 - within gdcmDictSet this change required to change some method
1007 to class methods (i.e. are now static) among which SetDictPath
1008 (renamed to BuildDictPath) and LoadDefaultPubDict.
1009 * python/gdcmPython/demo/printGroupedPublicDict.py changed to illustrate
1010 the above changes by calling the new method classes of gdcmDictSet.
1011 * python/gdcmPython/__init__.py now exposes gdcm.gdcmDictSet for
1012 the above to be effective.
1013 * python/gdcmPython: in order to wrap properly the above changes
1014 for Python, swig version now needs to be > 1.3.17.
1015 * python/gdcmPython/Makefile fixed to adapt itself to new
1016 configure/make shema introduced by Johan Montagnat (thanks for the
1017 contribution). Alas this Makefile cannot be turned into a proper
1018 Makefile.am without some heavy changes in the configure.in
1019 (for python dectection).
1020 * python/gdcmPython/gdcm.i: the out typemap map<string, list<string>>*
1021 now avoids publishing the empty entries.
1023 2003-02-13 Benoit Regrain <Benoit.Regrain@creatis.insa-lyon.fr>
1024 * python/setup.py : bug fix concerning install under windows
1025 ExtraPath reused :-P
1026 * gdcm.dsw : bug fix concerning path for libraries for python !!!
1028 2003-02-13 Benoit Regrain <Benoit.Regrain@creatis.insa-lyon.fr>
1029 * Dicts/dicomV3.dic : remove double spaces !!!
1030 * src/gdcmElValSet.cxx : bug fix concerning windows compiler
1031 * python/gdcmPython/win32/gdcmpycomplet.dsp : bug fix concerning paths
1034 2003-01-28 Eric Boix <Eric.Boix@creatis.insa-lyon.fr>
1035 * src/gdcmHeader.cxx added a post header parsing AddAndDefaultElements
1036 method. Doxygenation.
1037 * src/gdcm.h clean up of JPR spurious comments.
1039 2003-01-17 Eric Boix <Eric.Boix@creatis.insa-lyon.fr>
1040 * python/distutilsSwigCPlusPlus.py now properly collects the
1041 shadow classes generated by "swig -c++" (gdcm.py in our case)
1042 when using "python setup.py install".
1043 * python/gdcmPython/__init__.py imports gdcm.py and only manually
1044 reexports the working classes.
1045 * src/gdcmHeader.cxx all the try/catch/throw calls were replaced
1046 by the classical C errno scheme. This is to prevent an obscure
1047 behavior of the python wrappers when importing wxPython.wx prior
1048 to gdcmPython (which ended up in an abort call). An illustration
1049 of this oddity can be found in the Test/ExceptionAndPython
1050 subdir (see the README file). This problem probably due to
1051 an combination of g++ and dynamic loading.
1052 * added Test/ExceptionAndPython (see above)
1054 2003-01-17 Eric Boix <Eric.Boix@creatis.insa-lyon.fr>
1055 * Changed the layout of the python part to avoid bloating main
1056 directory with setup.py, distutilsSwigCPlusPlus.py, MANIFEST.in
1057 i.e. the distutils arsenal. All the python related stuff is
1058 again in a python subdir, but the package itself is now in
1060 * setup.py was cleaned up:
1061 - pythonIncludePath removed
1062 - python setup.py bdist target is now functional.
1063 * gdcmPython/__init__.py doesn't export FileName any more (to avoid
1064 collision with other packages). gdcmPython/demo/*.py changed
1067 2003-01-15 Eric Boix <Eric.Boix@creatis.insa-lyon.fr>
1068 * python subdir moved to gdcmPython (preparation of distutils packaging).
1069 * gdcmPython/setup.py and distutilsSwigCPlusPlus.py added. The
1070 distutils installer is operational.
1071 * - gdcmPython/__init__.py now properly loads the swig generated
1072 shadow classes (from gdcm.py).
1073 - gdcmPython/demo/*.py changed to import the package gdcmPython
1074 instead of gdcmPython/demo/load.py.
1075 - gdcmPython/testSuite.py changed to import the package gdcmPython.
1077 2002-12-16 Eric Boix <Eric.Boix@creatis.insa-lyon.fr>
1078 * src/gdcm.h, src/gdcmHeader.cxx: added GetPubTagNames() resp.
1079 GetPubTagNamesByCategory() to gdcmHeader that return a list of the
1080 entries within the associated public Dicom dictionary resp. the same
1081 information but sorted by the fourth field (PAT, IMG, DIR) of the
1083 - Dicts/dicomV3.dic Entries which had and unspecified fourth field
1084 are now in the "???" group.
1085 - python/gdcm.i changed accordingly,
1086 - python/demo/printGroupedPublicDict.py added, that gives an example
1087 of the above new functionalities in Python.
1089 2002-12-11 Eric Boix <Eric.Boix@creatis.insa-lyon.fr>
1090 * src/gdcm.h, gdcmHeader.cxx:
1091 - historic references to glib's g_malloc and g_free (#defined)
1092 were definitively removed.
1093 - gdcm.h: cosmetic changes (part of comments moved to Doc/requirements)
1094 * src/gdcmElValSet.cxx:
1095 - GetElement(guint32, guint32) renamed to GetElementByNumber.
1096 - GetElValue(guint32, guint32) renamed to GetElValueByNumber.
1097 - GetElValue(string) renamed to GetElValueByName.
1098 - Added GetElementByName(string).
1099 * src/gdcmHeader.cxx: added
1100 - GetPubElValRepByNumber(guint16, guint16)
1101 - GetPubElValRepByName(string)
1102 - GetShaElValRepByNumber(guint16, guint16)
1103 - GetShaElValRepByName(string)
1104 - GetShaElValByNumber(guint16, guint16)
1105 - GetShaElValRepByName(string)
1106 - GetElValRepByNumber(guint16, guint16)
1107 - GetElValRepByName(string)
1108 - GetElValByNumber(guint16, guint16)
1109 - GetElValRepByName(string)
1110 * Doc/requirements.txt added.
1112 2002-12-9 Eric Boix <Eric.Boix@creatis.insa-lyon.fr>
1113 * Test/Makefile building now depends on the one of libgdcm.so
1114 * src/gdcmHeader.cxx and gdcm.h are now OB (undefined length encoded
1115 pixel data) aware which enables finding the address (offset) of
1116 the pixel data of JPEG encoded DICOM files. This leaves only a single
1117 file in the testSuite whose pixel data address (offset) is unknown.
1118 * python/testSuite.py changed accordingly.
1120 2002-12-6 Christophe Odet + Hugues Benoit-Cattin + Eric.Boix
1121 * VC++ has some strong limitations when working with the STL, as stated
1122 in http://support.microsoft.com/support/kb/articles/Q168/9/58.ASP :
1123 "Also note that some STL containers (map, set, queue, list, deque)
1124 cannot be exported. [...]
1125 Some STL classes contain nested classes. These classes can not
1127 This is caused by a designed limitation that once a template
1128 class is instantiated, it can not be re-instantiated and
1130 Since our usage of map<> is ubiquitous in gdcm, this "designed
1131 limitation" of VC++ is a pitfall.
1132 Hence the Python wrappers of gdcm cannot be incrementally linked
1133 against the c++ dynamic library. The dirty but only workaround is
1134 to forget about incremental link of dynamic libraries and to generate
1135 the Python wrappers library with the inclusions of the underlying C++
1137 The following modifications concern this matter on Win32/VC++:
1138 - wrapping python correct with standalone wrapped dll (don't use separate
1139 dll under windows !!!!)
1140 - python21_d debug mode enabled (ask Frog how to use it :-)
1141 - NO problem with having an STL member of class for example string in C++
1142 WITH THE RESTRICTION OF FORGETING ABOUT INCREMENTAL LINK.
1143 - Python test of dcmlib in Python is ok under windows on a large set
1145 * removed glib references
1146 * typedef's inserted in gdcm.i for correct swig type management
1148 2002-11-27 Eric Boix <Eric.Boix@creatis.insa-lyon.fr>
1149 * python/demo/*.py load.py extracted from test.py. Added explore.py
1150 that only displays required tags and testAll.py that parses all
1151 the files of the testsuite without using unittest.
1152 * python/testSuite.py other additional test on new files added.
1153 * Data/* new test files added accordingly to the testSuite.
1154 * src/gdcmHeader.cxx avoid overwriting of the dictionary when
1155 the vr in the file differs from the one of the dictionary.
1157 2002-11-20 Eric Boix <Eric.Boix@creatis.insa-lyon.fr>
1158 * src/gdcm.h and gdcmHeader.cxx gdcm no longer loads all the elements
1159 values, but limits itself to values which are below a user specified
1160 size (by default 1024 bytes).
1161 * python/gdcm.i : elements not loaded (because their size is above the
1162 user specified treshold) are exported with their TagKey as key of the
1163 python dictionary. This enables the testsuite to make some checks
1164 on the unloaded elements (since we have their offset and size).
1165 * python/testSuite.py
1166 - now tests for the existence and proper value of the pixel data
1167 - two new examples added.
1168 * Data/gdcm-MR-SIEMENS-16.acr[12] added.
1170 2002-11-18 Eric Boix <Eric.Boix@creatis.insa-lyon.fr>
1171 * src/gdcm.h and gdcmHeader.cxx are now "Big Endian transfer syntax"
1172 aware. See the strategy comments in gdcmHeader::FindeLength().
1173 * Test/test.cxx now accepts a filename as first argument.
1174 * Data/US-PAL-8-10x-echo.dcm and US-RGB-8-epicard.dcm added.
1175 * python/testSuite.py changed to integrate test on above files.
1177 2002-11-15 Eric Boix <Eric.Boix@creatis.insa-lyon.fr>
1178 * Dicts/dicomV3.dic removed all the trailing (RET) when the
1179 the vr was also RET.
1180 * python/testSuite.py more tests added.
1182 2002-11-14 Eric Boix <Eric.Boix@creatis.insa-lyon.fr>
1183 * python/testSuite.py unittest test suite added (uses Data)
1184 * Data/* dcm and acr files for the test suite.
1185 * glib dependance removed from un*x version. We now use ISO C99
1186 7.18 Integer types (see stdint.h)
1187 - python/Makefile, src/Makefile src/gdcm.h
1188 * src/ when an explicit vr (like dicom files) suddenly poped an
1189 implicit element we use to mark the underlying DictEntry of the
1190 concerned ElValue with "Implicit". This strategy was damageable
1191 too the public or provite dictionaries, since some of their vr
1192 would be changed. Since Header::FindLength heavily relies on the
1193 detection by Header::FindVR of falsely explicit elements, I
1194 added an extra ImplicitVr member to ElValue (boolean).
1195 The rest of the changes we the necessary adaptations.
1197 2002-11-12 Eric Boix <Eric.Boix@creatis.insa-lyon.fr>
1198 * src/gdcmHeader::FindLength bug fix when trapping falsely explicit
1200 * src/gdcmHeader::FindVR: hard way fix of falsely explicit vr files.
1202 2002-11-8 Eric Boix <Eric.Boix@creatis.insa-lyon.fr>
1203 * Adaptation for porting to VC++:
1205 o forced to use std namespace (for string to be known)
1206 o all class use __declspec export style on WIN32
1207 - src/gdcmUtil.cxx new Exit method that wraps the exit call
1208 (in stdlib.h on Win32 but in std:: for gcc)
1209 * src/gdcmDictSet::SetDictPath adds a trailing / to environement
1210 variable GDCM_DICT_PATH.
1211 * src/gdcmHeader.cxx verbose comments made discrete.
1213 2002-11-7 Eric Boix <Eric.Boix@creatis.insa-lyon.fr>
1214 * python/gdcm.i: added a typemap that converts a C++ hashing table
1215 to native Python dictionary.
1216 * python/demo/test.py:
1217 - now uses the native dictionary for exploration of gdcmHeader.
1218 - takes an optional filename argument (the file to parse).
1219 * src/gdcm.h and gdcmHeader.cxx: gdcmHeader now has an accessor on
1220 PubElVals hashing table.
1221 * Dicts/dicomV3.dic removed error prone trailing spaces.
1223 2002-11-6 Eric Boix <Eric.Boix@creatis.insa-lyon.fr>
1224 * Python wrapping process moved away from src/Makefile to
1225 newly created python/Makefile (as well as gdcm.i)
1226 * python/demo/test.py (that mirrors Test/test.cxx) is effective.
1227 * src/gdcmHeader::FindLength only looks for current vr when necessary.
1228 * src/gdcmDictSet.cxx: the dictionnaries directory path is now imported
1229 from the environement variable GDCM_DICT_PATH (when existing).
1230 * src/gdcmDict::GetTag bug fix.
1232 2002-10-31 Eric Boix <Eric.Boix@creatis.insa-lyon.fr>
1233 * Straightforward temporary fixes for swig to build the python wrappers.
1234 src/Makefile now has a python working entry [by working we mean
1235 that we can import de shadow classes without errors].
1237 2002-10-29 Eric Boix <Eric.Boix@creatis.insa-lyon.fr>
1238 * hashtest.cxx removed (since allready in Test)
1239 * src/gdcmlib.h renamed to src/gdcm.h
1240 * src/dcm.i renamed to src/gdcm.i
1241 * src/Makefile prepared for python wrapping
1243 2002-10-29 Eric Boix <Eric.Boix@creatis.insa-lyon.fr>
1244 * src/gdcmHeader.cxx :
1245 - Parsing of header is now separated from loading of element values
1246 (see gdcmHeader::LoadElements).
1247 - general clean up of hopefully all file access (creation of
1248 ReadInt16 and ReadInt32)
1250 2002-10-22 Eric Boix <Eric.Boix@creatis.insa-lyon.fr>
1251 * src/gdcmHeader.cxx :
1252 - RecupLgr renamed to FindLength and cut off with new IsAnInteger
1254 - SetLgrElem renamed to SetLength
1255 - GetLgrElem renamed to GetLength
1256 - ~gdcmHeader() made virtual to pesky warning messages at compile.
1257 * src/gdcmElValSet.cxx fixed both GetElValue methods
1258 * Dicts/dicomV3.dic falacious entry [7fe0 0010 OT PXL Pixel Data]
1259 due to IdoDude was cleaned out.
1261 2002-10-21 Eric Boix <Eric.Boix@creatis.insa-lyon.fr>
1262 * src/gdcmHeader.cxx RecupLgr split in FindVR and RecupLgr. FindVR
1263 concentrates on finding the value representation (when it exists).
1264 RecupLgr now only finds the element value length, and it avoids
1265 returning the unecessary skL (skipped length).
1266 Also, offsetCourant was simply removed (with taille_fich) since
1267 it was redundant with the File position internals (by using
1268 ftell and fseek). This also made skL (see above in RecupLgr) usage
1270 * src/gdcmHeaderIdo.cxx src/gdcmIdo.h added. Those files concentrate
1271 on the libido specificities which are handled through class
1273 * Test/implicit_vr.dcm dicom v3 in implicit value representation
1276 2002-10-17 Eric Boix <Eric.Boix@creatis.insa-lyon.fr>
1277 * Truckload of changes. Parsing of header is barely functional
1278 (see Test/test) with the standard dictionary (see Dicts/dicomV3.dic).
1280 2002-10-10 Eric Boix <Eric.Boix@creatis.insa-lyon.fr>
1281 * src/gdcmHeader.cxx many addons of low level methods
1283 2002-10-07 Eric Boix <Eric.Boix@creatis.insa-lyon.fr>
1284 * src/gdcmHeader now contains_IdDcmCheckSwap, _IdDcmRecupLgr,
1285 and _IdDcmSWAP_LONG.
1287 2002-09-12 Eric Boix <Eric.Boix@creatis.insa-lyon.fr>
1288 * This corresponds to all the changes decided at the meeting of
1289 May 23 2002. Needless to say we are running late...