1 2004-02-10 Benoit Regrain
2 * FIX : bug fix in the gdcmDirList for the recursivity in directories
3 * FIX : in gdcmDicomDir when the directory is empty
5 2004-02-06 Jean-Pierre Roux
6 * ENH : - now gdcmDicomDir::CreateDicomDir() returns also the meta elements
7 - GDCM_META added to gdcmDicomDirType
8 - class gdcmMeta created
9 * ENH : - A brief summary is now displayed at the beginning of
10 'testDicomDir' to help disaster magnitude estimation
11 * REM : Now useless Test/explDICOMDIR.cxx
13 2004-02-05 Benoit Regrain
14 * ENH : add methods in gdcmObject to get the hash table or the list of
16 * FIX : wrapping python for ListPatient, ListStudy, ListSerie, ListImage
17 * FIX : wrapping python for TagHeaderEntryHT
19 2004-02-04 Benoit Regrain
20 * FIX : even length for some strings when writting the dicom dir
21 * FIX : sort the images in the dicom dir
22 * FIX : Bug fix for python use of dicom dir
25 2004-02-04 Jean-Pierre Roux
26 * FIX : Final solution (?) for icone embedded images
27 * FIX : dicomVR.dic Overlay group is not *only* 6000, but 60xxx
28 (see http://medical.nema.org/dicom/2003/03_06PU.PDF)
29 add groups 6002, 6004, 6006, to allow 'clean' parsing of
30 gdcmData/gdcm-MR-SIEMENS-16.acr1
31 * ENH add gdcmData/checkWriteExplicit.sh gdcmData/checkWriteImplicit.sh
32 to make full checking easier
34 2004-02-04 Benoit Regrain
35 * FIX : WriteEntries : coding style & logic in parameters
36 * FIX : Set the elements to create the DicomDir in a dictionary file
38 2004-02-03 Benoit Regrain
39 * gdcmDirList : to parse a hard drive directory in recursive (or not)
40 * gdcmDicomDir : add the load of directory
41 * Bug fix and print add-on
43 2004-02-03 Jean-Pierre Roux
44 * ENH gdcmParser : allows "DICM" files, with NO group '0002'
45 * FIX handling 'non string elements' unsecure area (LUT, overlays, etc)
46 * FIX Dicts/dicomV3.dic : Add a few missing 'group length' Elements
47 * FIX gdcmParser.cxx : 'group length' elements are now considered
48 as integers, even for shadow groups, when file is Implicit VR
50 2004-02-02 Jean-Pierre Roux
51 * FIX : gdcmWrite : equal_range() for multimap doesn't return a 'second'
53 of the last synonym :-(
54 * FIX : gdcmWrite::WriteBase : method stops if Pixels not yet Read (except
56 * ENH gdcmData/checkWrite.sh :modif for full check of Explicit VR writting
57 * FIX taking into account the possible 7fe0,0010 multiplicity
58 * FIX add GRPixel,NumPixel,countGrPixel (gdcmParser protected members)
59 to allow removal of references to 7fe0,0010, to deal with
60 ACR-NEMA images, when 0028,0200 is meaningfull
62 2004-01-31 Jean-Pierre Roux
63 * FIX gdcmParser::WriteEntries : when a VR is tagged as 'Unknown'
64 no longer writes 'Un' on disk
65 * FIX SQ elements with actual length are now dealt with corectly
66 * FIX gdcmFile::WriteBase make the difference, for color images, between
67 the length (for Palette expanded omages)
68 and Raw Length (non expanded image + Palette)
69 * FIX Dicts/dicomV3.dic : removal of 'CTX' (context dependant) VR
70 (that broke Write). Replaced by UL.
71 Aware user will reload the field if he
72 thinks it's necesssary
74 2004-01-30 Jean-Pierre Roux
75 * gdcmParser::CheckSwap() now defaults the filetype to ACR
76 when 'dirty Acr' is found, to be compliant with the new
79 * gdcmHeaderHelper :add Pixel Type 'FD', for dealing with 'double' images.
80 (no DOUBLE images in kosher DICOM,
81 but so usefull for people that miss them ;-)
83 * add Test/testDicomDir.cxx, Test/makeDicomDir.cxx , Test/explDICOMDIR.cxx
84 DICOMDIR related utilities (not checked as Windoze compliant)
86 2004-01-28 Jean-Pierre Roux
87 * upgrade GdcmHeaderEntry Print Method for DICOMDIR
89 2004-01-27 Jean-Pierre Roux
90 * gdcmParser constructor has a new boolean param,'ignore_shadow',
91 to allow skipping the shadow elements, to save memory space.
92 The TRUE value for this param has to be used
93 with a FALSE value for the 'enable_sequence' param.
94 ('public elements' may be embedded in 'shadow Sequences')
95 * gdcmHeader methods now deal with 'embedded icones images' in the header
96 (even when an 'icone image sequence' is announced by the
97 element (0x0088,0x0200), but there is NO icone at all ...
99 * gdcmHeader sometimes Image Location value doesn't follow
100 the supposed processor endianity (see gdcmData/cr172241.dcm).
103 * gdcmHeader add the method
104 IterHT GetHeaderEntrySameNumber(grPixel,numPixel);
105 to get *all* the Header Entries with the same tag.
106 GetHeaderEntrySameName is probabely *useless*
107 (no meaning : Name is *not* an identifier within the Dictionnary)
109 2004-01-26 Benoit Regrain
110 * Bug fix in the print of hexadecimal representations. Remove long fields
111 in the print and add a third level of print to print them
113 2004-01-23 Benoit Regrain
114 * Bug fix on field having a VR = 'UI'. Assume that is a string field
115 * Bug fix on test suite after remove the strip made on not string fields
116 * Split the IsReadable method between gdcmParser which test that the file
117 is dicom and gdcmHeader which test that it's an image file
119 2004-01-22 Benoit Regrain
120 * DicomDir : clean code, add methods, set variables in protected or private
121 * gdcmUtil : bug fix for the clean string method
123 2004-01-19 Benoit Regrain
124 * Add the use of shadow dictionaries
125 * bug fix and coding style
127 2004-01-19 Benoit Regrain
128 * src/gdcmFile.cxx : bug fix concerning the close of file
129 * src/gdcmParser.[h|cxx] : remove obvious Pub informations
130 * Add the update of header entries using the shadow library
132 2004-01-19 Benoit Regrain
133 * removal of file gdcmHeader2.cxx
134 * split class gdcmHeader into gdcmParser and gdcmHeader, with gdcmHeader
135 inheriting from gdcmParser. This split is to prepare the integration
137 * bug fix under python
139 2004-01-16 Jean-Pierre Roux
140 * removal of class gdcmHeaderEntrySet
141 * removal of files gdcmHeaderEntrySet.cxx, gdcmHeaderEntrySet.h
142 * add file gdcmHeader2.cxx
143 * add method gdcmHeader::SetPrintLevel (for PrintHeader)
145 2004-01-15 Benoit Regrain
146 * src/gdcmDicSet.[h|cxx] : add virtual entries to have a reference of
147 entries created while parsing the header. Thus, they will be destroyed
148 when the gdcmDictSet will be destroyed
149 * src/gdcmHeader.cxx, gdcmHeaderEntrySet.cxx : uses virtual entries of
152 2004-01-15 Benoit Regrain
153 * vtk/vtkGdcmReader.cxx : bug fix : before, with python only, the program
154 made a fatal error because of the memory release at the end of program.
155 The problem was in vtkGdcmReader::ExecuteData where we were allocate
156 some memory and vtk seems to have some problems with that.
157 * src/gdcmHeaderEntrySet.cxx : bug fix for std lib and cout
159 2004-01-14 Benoit Regrain
160 * src/gdcmHeaderEntry.[h|cxx] : gdcmElValue -> gdcmHeaderEntry
161 * src/gdcmHeaderEntrySet.[h|cxx] : gdcmElValSet -> gdcmHeaderEntrySet
162 * src/*.[h|cxx] : make changes due to class name changes
163 * gdcmPython/demo/*.py : bug fix due to method names
165 2004-01-13 Benoit Regrain
166 * src/*.[h|cxx] : coding style
167 * vtk/*.[h|cxx] : coding style
169 2004-01-13 Benoit Regrain
170 * gdcmPython/testSuite.py : test the readable flag of file for tests
171 * src/gdcmDict.cxx, gdcmElValSet.cxx : bug fix under windows for prints.
172 It's lied to the stl compilation by MSVC (windows, always windows...)
173 * src/gdcmIdo.h, gdcmHeaderIdo.cxx : remove the Ido unused files
175 2004-01-12 Benoit Regrain
176 * src/*.h : add comments
177 * src/gdcmDictSet.h : set the method BuildDictPath in public
178 * src/gdcmTS.cxx, gdcmVR.cxx : use now a dictionnary file other than to be
179 directly setted in the source code
180 * Dicts/dicomTS.dic, dicomVR.dic : 2 new dictionnary files loaded by
183 2004-01-09 Benoit Regrain
184 * gdcmPython/gdcmVersion.py : add a gdcmVERSION variable information
185 * setup.py : use a reference to gdcmVERSION
187 2004-01-07 Benoit Regrain
188 * Modification to compile with the distutils.
191 2003-12-10 Benoit Regrain
192 * gdcmHeader is now aggregating gdcmFile, and not derived into. Thus, we
193 can use a gdcmHeaderHelper to load datas
194 * gdcmPython/testSuite.py : make the testSuite compliant with modifications
195 made in the source code
197 2003-12-10 Benoit Regrain
198 * Update Windows projects and .cvsignore files
200 2003-11-12 Jean-Pierre Roux
201 *ENH gdcmHeader constructor has one more parameter (default value : false)
202 that allows the user to 'go inside' the SeQuences only
204 gdcmElValSet:Print takes it into account
206 2003-11-12 Mathieu Malaterre <Mathieu.Malaterre@creatis.insa-lyon.fr>
207 *ENH: Update gdcmPython/CMakeLists
208 *FIX: (gdcmHeaderHelper) GetRescale and GetSlope
209 *FIX: (gdcmElValSet) char 'tag' was overiding private members (VC++)
211 2003-11-10 Jean-Pierre Roux
212 *FIX : gdcmHeader::LoadElements is now based
213 on the ListTag listElem member,
214 not longer on the TagElValueHT tagHt member
215 *ENH : PrintPubElVal shows (temporarily) both results,
216 with the tagHt member and the listElem member.
217 (it's easier to 'see' the problems when using Printheader)
219 *FIX : old private member LgrElem is now splitted into
220 ReadLength : Length actually found on disk (updated only
221 if bug fixing is necessary), for internal
223 UsableLength : Updated by FixFoundLength, to fix a bug
224 or to allow Parser going on.
225 Will allow to re-write a kosher header when a SeQuence
226 with a length (not 0000) is found
227 Warning : gdcmFile::Write still uses the TagHt (not ListElem)
228 because gdcmElValSet::Add does not update ListElem
231 2003-11-07 Jean-Pierre Roux
232 *FIX misstyping in Transfert Syntax name table
233 *ENH gdcmHeader::FixFoundLength now allow to 'go inside' tge SeQuences
234 when they have an actual length (not 0000 nor FFFFF)
235 (Nobody should care of it, but DICOMDIR explorers)
237 2003-11-06 Mathieu Malaterre <Mathieu.Malaterre@creatis.insa-lyon.fr>
238 *ENH: vtkgdcmViewer now works with LUT dicom (OT-PAL-face ...)
240 2003-11-05 Mathieu Malaterre <Mathieu.Malaterre@creatis.insa-lyon.fr>
241 *ENH: vtkGdcmReader now supports LUT !
242 (vtkgdcmViewer for now is not able to use them though)
244 2003-11-05 Jean-Pierre Roux
245 * in testSuite.py : new files names for checking the package
246 * Fix : Forgot to commit gdcmFile::GetImageDataSizeRaw();
247 that returns the pixel area size to the *aware* (vtk) user
248 that DOESN'T want to turn the PALETTE COLOR image into an RGB image
250 2003-11-05 Benoit Regrain
251 * in testSuite.py : Modify the rules for checking the paths
252 : Explicit error messages
253 * in __init__.py : Related modif
255 2003-11-03 Jean-Pierre Roux
256 * add gdcmHeaderHelper::GetNumberOfScalarComponentsRaw()
257 to be used by aware (vtk) users that want to manage
258 LUT (and no to turn the PALETTE image into an RGB pixels one)
259 * GetPixelType now returns 8U for 24 Bits images
260 (vtkGdcmReader compliant)
262 2003-10-31 Jean-Pierre Roux
263 * Removal of *all* gdcmData images and add them again
264 in order to loose the 'history' of un-anonymised images
266 2003-10-31 Jean-Pierre Roux
267 *RMV : removal of useless jBitsInJsample.h
268 for both 8 and 12 Bits JPEG Lossy Libraries
270 2003-10-31 Jean-Pierre Roux
271 * ENH : Add the functions gdcmFile::GetImageDataRaw
272 gdcmFile::GetImageDataIntoVectorRaw
273 that act as GetImageData and GetImageDataIntoVector
274 except the making of an RGB Plane from Gray Plane + LUT
275 Intended to aware (vtk) users who know how to manage
278 GetLUTRGBA return a R,G,B,A LUT if any
279 lgrTotaleRaw gives the 'Raw' length
280 GetImageDataRaw returns the gray Plane
281 * FIX : no more dirty trick for 'Segmented xxx Palette Color Lookup' images
282 (They stay Grey, just like with other Dicom viewers :-(
284 2003-10-30 Jean-Pierre Roux
285 * FIX : a VC++ intended syntax modif broke the 12/12 Bytes expanding
287 2003-10-29 Mathieu Malaterre <Mathieu.Malaterre@creatis.insa-lyon.fr>
288 *ENH: Can be used like this '$vtkgdcmViewer *.dcm' with *.dcm
289 being coherents dicom files.
291 2003-10-29 Mathieu Malaterre <Mathieu.Malaterre@creatis.insa-lyon.fr>
292 *FIX: DOH ! Forgot about windo$e users, they couldn't read lossless jpeg,
294 *ENH: Turn it into DOS file type to match libgdcmijpeg8.dsp file type
295 *ENH: Two steps is necessary to please VC++ compiler...
296 *FIX: DOH ! libgdcmijpg8 -> libgdcmljpeg
297 *ENH: Add include dir to medcon lib
298 *FIX: only one function is being exported for now !
299 You should use GLOBAL(return type) see ljpg/jpeg.h for more info
301 2003-10-29 Jean-Pierre Roux
302 * adding gdcmHeader::GetLUTRGBA
303 returns a 4 * 256 Bytes Reg/Green/Blue/Alpha vtk compliant LUT
304 --> Mathieu, the modif u're waiting for is not yet committed
305 * removal of now useless GetLUTRed,GetLUTGreen,GetLUTBlue,GetLUTRGB
307 2003-10-27 Jean-Pierre Roux
308 * adding some xmedcon breaker files (courtesy of Loïc Boussel)
309 . 00191113.dcm DermaColorLossLess.dcm
310 MxTwinLossLess.dcm RadBWLossLess.dcm
311 * ENH: For version prior to vtkImageViewer2 -r 1.19
312 * FIX: avoid pb with xmedcon-breaker CT McTwin Elscint images
314 2003-10-27 Mathieu Malaterre <Mathieu.Malaterre@creatis.insa-lyon.fr>
315 * Removal of ido stuff in CMakeLists.txt
317 2003-10-24 Mathieu Malaterre <Mathieu.Malaterre@creatis.insa-lyon.fr>
318 * ENH: vtkGdcmReader.cxx can now read multiframe dicom
319 * FIX: remove a call to ->Modified ... see comments
320 * FIX: vtkgdcmViewer.cxx was writting ASCII file...this is so slooooooow !
322 2003-10-23 Mathieu Malaterre <Mathieu.Malaterre@creatis.insa-lyon.fr>
323 * FIX: Problem with path for libvtkgdcmPython
324 * ENH: Try adding a search script for python site-package
325 * RMV: Remove some file from medcon lib that are not necessary
326 * FIX: gdcm/Makefile.am fix for generating ljpg medcon
327 * ENH: CMakeLists.txt now generate 'pygdcm.so' instead of 'libpygdcm.so'
328 * FIX: More pragma disable fro VC++,
329 I don't think I break something as it is also disable in VTK/ITK.
330 But it fasten debug compilation time.
332 2003-10-23 Jean-Pierre Roux
333 * gdcm now deals with 16 Bits Run Length Encoded images
334 (they are compressed as 2 planes images,
335 one for the high Bytes, the other for low Bytes)
337 2003-10-22 Jean-Pierre Roux
338 * Now CheckRead takes into account :
339 the bugged 'Leonardo' Siemens images
340 the XA images, sent thru the burning VPRO station
341 * add I9000001.dcm, a GE dlx XA image, thru the VEPRO burning station
344 2003-10-22 Mathieu Malaterre <Mathieu.Malaterre@creatis.insa-lyon.fr>
345 * FIX: When copying a Makefile.am to CMakeLists.txt
346 one should remove the '\'
348 2003-10-22 Jean-Pierre Roux
349 * in gdcmData adding a bugged 'Leonardo' Siemens image
350 (wrong lengths in header)
351 OK with gdcm, KO with the other viewers :-)
352 * add a GE dlx XA image, thru the VEPRO burning station
355 2003-10-21 Jean-Pierre Roux
356 * in gdcmData add the checkvtkgdcmViewer.sh shell script
357 for a brutal checking of vtkgdcmViewer compliance
359 2003-10-21 Jean-Pierre Roux
360 * add the files for 'xmedcon' Jpeg Lossless library
361 * call of 'xmedcom' Jpeg Lossles libray (instead of the old LibIDO one)
363 2003-10-21 Jean-Pierre Roux
364 * 'Compacted Files' (12 Bits Allocate, 12 Bits Stored) are now dealt with
366 2003-10-21 Jean-Pierre Roux
367 * garbage Siemens 'Leonardo' images dealt with
368 (the patch is easy to remove)
369 * cosmetic changes to avoid warnings
371 2003-10-20 Mathieu Malaterre <Mathieu.Malaterre@creatis.insa-lyon.fr>
372 * ENH: vtkgdcmViewer now autoscale color/window level on start-up,
373 no need to press 'r' now.
375 2003-10-20 Jean-Pierre Roux
376 * upgrade of checkRead.sh checkWrite.sh according
377 to new Jpeg Lossless decompressor
378 * add US.3405.1.dcm, a genuine RGB medical file ...
379 * add gdcm-ACR-LibIDO.acr, unnormalized Rectangular LibIDO format image
380 * add CLIP0001-Sequoia-U11.dcm, US 'Clip', from SEQUOIA machine,
382 2003-10-15 Jean-Pierre Roux
383 * general anonymisation in gdcmData
384 * adding the 'color files' from
385 http://www.leadtools.com/SDK/Medical/DICOM/ltdc19.htm
386 * adding some well knowed bugged-header images
387 * adding checkRead.sk, checkReadColor.sh, checkWrite.sh,
388 waiting for their inclusion in Python testsuite
390 2003-10-15 Jean-Pierre Roux
391 * gdcmHeader::gdcmHeader(const char *InFilename, bool exception_on_error)
392 no longer seg faults when file is not found
394 2003-10-14 Jean-Pierre Roux
395 * Emprovement of reading for Dicom encapsulated Jpeg LossLess MultiFrame images
397 2003-10-14 Mathieu Malaterre <Mathieu.Malaterre@creatis.insa-lyon.fr>
398 * TODO: *.in file to genereate a UseGDCM later
400 2003-10-14 Jean-Pierre Roux
401 * Some supposed-to-be Dicom Images have no preamble.
402 OpenFile takes it into account
403 * Jpeg LossLess 24 Bits images doesn't break any longer gdcm
404 * Missing elements added in dicomV3.dic
405 (just to be affraid : have a look at
406 ftp://medical.nema.org/medical/dicom/2003/01v03dif/01v03_06.pdf
407 and do it again next year ;->
409 2003-10-13 Jean-Pierre Roux
410 * According to PS 3.3-2003 C.11.1.1.2 p 619, when each pixel of
411 a PALETTE COLOR is stored on 2 Bytes, theese 2 Bytes must be equal.
412 But there are NOT. It's fixed !
414 2003-10-13 Mathieu Malaterre <Mathieu.Malaterre@creatis.insa-lyon.fr>
415 * FIX: "jpeglib.h" was not found on VC++
416 * FIX: vtkgdcm was not being installed
418 2003-10-10 Jean-Pierre Roux
419 * ENH : OpenFile closes the file if it *really* doesn't look like
420 an ACR-NEMA / DICOM one.
421 * FIX : testWrite no longer writes an empty file if the source file
423 * ENH : One more JPEG LossLess type "JPEG Baseline (Process 14)"
426 2003-10-10 Mathieu Malaterre <Mathieu.Malaterre@creatis.insa-lyon.fr>
427 * FIX: CMake generate now documentation
428 * ENH: out of source doc build !
429 * ENH: Generate both user and dev documentation
430 * ENH: Should work on windows too
431 * ENH: Only one doxygen config.in file is needed
432 * FIX: make install should be ok now on ùnix plateform
433 * FIX: PATH to dictionary was wrong (missing /)
434 * ENH: OpenFile, return true if the file looks like an ACR or DICOM file
436 2003-10-09 Mathieu Malaterre <Mathieu.Malaterre@creatis.insa-lyon.fr>
437 * vtkGdcmReader is now able to read rgb dicom file.
438 * src/gdcmHeaderHelper : GetNumberOfScalarComponents()
439 * added a gdcmViewer to vtk test, use mouse to control
440 window level & window width
442 2003-10-09 Mathieu Malaterre <Mathieu.Malaterre@creatis.insa-lyon.fr>
443 * CMake-ification of gdcm, we have now two build system
444 * FIX: on cygwin Wsock32 doesn't exist
445 * FIX: force jpeg dir to the local one (gdcm/src/jpeg)
447 2003-10-06 Emanuel Ollart
448 * FIX : compilation process wad broken.
449 Changed gdcmViewer_sources to vtkgdcmViewer_sources
451 2003-10-06 Mathieu Malaterre <Mathieu.Malaterre@creatis.insa-lyon.fr>
452 * change gdcmViewer -> vtkgdcmViewer
453 * change GetXSpacing and GetYSpacing "%f\\%" is parsed backward
455 2003-10-06 Jean-Pierre Roux
456 * FIX :A few nasty patches to allow the reading of a lot of nasty images
457 ( e.g : well known GE images with a wrong elem length,
458 : Philips MRI Images with a wrong Huffman table)
459 * still to be done : allow the reading of bugged LEONARDO Siemens images
461 2003-10-03 Jean-Pierre Roux
462 * Odd length strings are padded with '\0' (not with spaces,
463 to remain compliant with already defined strings,
464 like Transfert Syntax UID and others)
466 2003-10-03 Jean-Pierre Roux
467 * ENH :gdcmHeaderHelper::GetNumberOfScalarComponents() added,
468 to allow displaying RGB images (not only by affim ;-)
470 2003-10-03 Mathieu Malaterre <Mathieu.Malaterre@creatis.insa-lyon.fr>
471 * vtkGdcmReader is now able to read rgb dicom file.
472 * src/gdcmHeaderHelper : GetNumberOfScalarComponents()
474 2003-10-03 Jean-Pierre Roux
475 * A few nasty patches to allow the reading of a lot of nasty images
476 ( e.g : well known GE images with a wrong elem length,
477 : Philips MRI Images with a wrong Huffman table)
478 * still to be done : allow the reading of bugged LEONARDO Siemens images
480 2003-10-03 Jean-Pierre Roux
481 * One more JPEG LossLess type "JPEG Baseline (Process 14)" is now decoded.
483 2003-10-03 Jean-Pierre Roux
484 * gdcmHeaderHelper::GetNumberOfScalarComponents() added,
485 to allow displaying RGB images (not only by affim ;-)
487 2003-10-03 Jean-Pierre Roux
488 * gdcmFile::GetImageDataIntoVector now
489 - deals with MultiFrames MultiFragments Run Length Encoded files
490 - deals with YcBcR (YBR_FULL) files
491 - deals with YBR_YBR_FULL_422 files (they work as RBG files ?!?)
492 WARNING : nothing was checked for YBR_PARTIAL_422, YBR_ICT, YBR_RCT files.
495 2003-10-02 Mathieu Malaterre <Mathieu.Malaterre@creatis.insa-lyon.fr>
496 * src/*.cxx removed pragma thingies to src/gdcmCommon.h
497 Two reasons: - clear things
498 - third parties acces gdcm through header files, so won't
499 suffer anymore VC++ complains
500 2003-09-30 Mathieu Malaterre <Mathieu.Malaterre@creatis.insa-lyon.fr>
501 * add argv[1] in testvtkGdcmReader.cxx
504 2003-09-24 Jean-Pierre Roux
505 * The lines are now eigthy characters long.for
506 gdcmHeader.cxx gdcmHeaderHelper.cxx gdcmParse.cxx
508 2003-09-22 Benoit Regrain <Benoit.Regrain@creatis.insa-lyon.fr>
509 * src/gdcmUtil.[cxx|h] : change the _CreateCleanString return value from
510 char* to std::string. Thus, the use of strdup becomes useless. (see
511 previous commis of Malaterre)
512 * src/gdcmElValSet.cxx : reuse commented call to _CreateCleanString like
513 before the last Malaterre's commit.
515 2003-09-19 Mathieu Malaterre <Mathieu.Malaterre@creatis.insa-lyon.fr>
516 * This commit should fix the Debug building under VC++, the problem
517 was mainly a mixture of debug and release lib being loaded at startup.
518 * I also remove a depency to a specific C function: strdup. Because I had
519 to force the link to msvcrtd (whereas strdup is in libc).
521 2003-09-16 Benoit Regrain <Benoit.Regrain@creatis.insa-lyon.fr>
522 * "gdcm::Unfound" string changed to a constant variable (GDCM_UNFOUND)
523 located in the gdcmCommon.h file. All use of reference of tha has been
524 changed to now use the variable GDCM_UNFOUND.
526 2003-09-16 Eric Boix <Eric.Boix@creatis.insa-lyon.fr> with JPR
528 - gdcmPython/testSuite.py adapted to the JPR updated Dicts/dicomV3.dic
529 Dicom dictionary. The test suite can now be run again. Note:
530 I'm note very happy with the " (RET)" changes. I believe this
531 RETAINED comment should be dropped when parsing the dictionary.
534 - AUTHORS updated and now in alphabetical order
535 * Makefile.am now exports gdcm.dsw for Windoze users.
537 2003-09-11 Mathieu Malaterre <Mathieu.Malaterre@creatis.insa-lyon.fr>
538 * cygwin complains about missing std:: in subdir Test/
540 2003-09-10 Mathieu Malaterre <Mathieu.Malaterre@creatis.insa-lyon.fr>
541 * remove some methods that are now in gdcmHeaderHelper
543 2003-09-10 Mathieu Malaterre <Mathieu.Malaterre@creatis.insa-lyon.fr>
544 * vtkGdcmReader set spacing and origin correctly
546 2003-09-09 Mathieu Malaterre <Mathieu.Malaterre@creatis.insa-lyon.fr>
547 * Fix a few delete/delete[] mismatch
549 2003-09-08 Mathieu Malaterre <Mathieu.Malaterre@creatis.insa-lyon.fr>
550 * src/gdcmHeaderHelper.[h cxx]: added new class that provide an
551 interpretation to data given by gdcmHeader. For instance there are
552 heuristics to get informations (look at different places).
553 * it also include a specific class: gdcmSerieHeaderHelper devoted to
554 sorting DICOM images based on different strategies.
555 * modified Makefiles accordingly.
557 2003-09-05 Mathieu Malaterre <Mathieu.Malaterre@creatis.insa-lyon.fr>
558 * src/*.cxx : added pragma disable 4786/4251 to get rid of ~4300 warning
559 when building in debug mode
560 * vtk/win32/vtkgdcm.dsp : change /MT -> /MD and /MTd -> /MDd to match
561 src/win32/gdcmdll.dsp
562 * vtk/win32/vtkgdcm.dsp : added /nodefaultlib "mscvrt" for debug mode
564 2003-08-29 Mathieu Malaterre <Mathieu.Malaterre@creatis.insa-lyon.fr>
565 * Corrected a leak in vtkGdcmREader.cxx, the pSource was find thanks to valgrind.
567 2003-07-29 Mathieu Malaterre <Mathieu.Malaterre@creatis.insa-lyon.fr>
568 * src/win32/libgdcmjpeg12.dsp was not dos format
569 * src/win32/libgdcmjpeg12.dsp : libgdcmijpeg12_EXPORTS -> LIBGDCMIJPEG12_EXPORTS
570 * src/win32/gdcmdll.dsp: + /I "..\jpeg\libijg12"
572 2003-07-29 Benoit Regrain <Benoit.Regrain@creatis.insa-lyon.fr>
573 * src/gdcmHeader.h : add std:: prefix for stl elements... like others in
575 * src/gdcmFile.cxx : bug fix in affectation type
576 * src/jpeg/libijpeg12/jmorecfg12.h : export for windows modified... like
577 in src/jpeg/libijpeg8/jmorecfg8.h (JPR : copy/paste exists !!!)
578 * Modifs of MVSC projects to compile them. Not concerning 2 identic
579 symbols... future problem ?
581 2003-07-29 Mathieu Malaterre <Mathieu.Malaterre@creatis.insa-lyon.fr>
582 * src/win32/libgdcmijpeg12.dsp was missing
583 * modified gdcm.dsw accordingly
585 2003-07-28 Mathieu Malaterre <Mathieu.Malaterre@creatis.insa-lyon.fr>
586 * src/gdcmHeader.cxx : misplaced return 0.; for ACR/NEMA
588 2003-07-24 Benoit Regrain <Benoit.Regrain@creatis.insa-lyon.fr>
589 * src/jpeg/libijg12/.cvsignore, jconfig.* : ommited files while last
590 commit of JPR (before his hollidays to facilitate our work).
591 * setup.py : bug fix in code. Modifications made while the last commit
592 of JPR. The code hasn't been tested before the commit... it's so
593 useless to make that (for best programmer that is JPR) !!!
595 2003-07-08 Eric Boix <Eric.Boix@creatis.insa-lyon.fr>
596 * tagged the current version as Version0_3 (i.e. version 0.3)
598 2003-07-08 Benoit Regrain <Benoit.Regrain@creatis.insa-lyon.fr>
599 * vtk/testvtkGdcmReader.cxx : remove a symbol that is unused
600 * src/jpeg/libijg8/jmorecfg.h : adding export symbol for windows
601 * *.dsp : modifications to use new libgdcmijpeg8 library
602 * setup.py : bug fix on VTKPATH variable
603 * PACKAGER : adding all concerning windows
605 2003-07-07 Eric Boix <Eric.Boix@creatis.insa-lyon.fr>
606 * src/gdcmElValSet.cxx, gdcmFile.cxx: JPR bug fix, removal of
608 * TODO, vtk/vtkGdcmReader.cxx: upcoming fixes comments.
609 * gdcmPython/testSuite.py: JPR bug fix, brutal erasement of
610 test suite reported error.
611 * PACKAGER file added (describes what a packager must do when
612 packaging a new release).
613 * MANIFEST.in, now declares jconfig.linux and jconfig.vc
614 * configure.in: upgraded version number to 0.3.0
615 * fixing build of rpm (through rpm -ta):
616 - Doc/Makefile.am exports proper doxygen files
617 - src/jpeg/libijg8/Makefile.am exports the include files.
619 2003-07-07 Benoit Regrain <Benoit.Regrain@creatis.insa-lyon.fr>
620 * vtk/vtkGdcmReader.cxx : bug fix when loading only 1 file.
621 * src/gdcmHeader.h : formatting code
623 2003-07-07 Benoit Regrain <Benoit.Regrain@creatis.insa-lyon.fr>
624 * vtk/vtkGdcmReader.[cxx|h] : bug fix when loading only one file.
625 We were obtaining error message from vtk. Now, creation of file list
626 is made in an internal list to prevent this problem.
627 Bug fix when output is empty.
628 Bug fix in update of progress value. Previous commit for this was a bad
630 * vtk/vtkGdcmReader.h : adding comments for InternalFileNaleList variable
632 2003-07-04 Benoit Regrain <Benoit.Regrain@creatis.insa-lyon.fr>
633 * src/gdcmHeader.h : added method to get the file name
634 * vtk/vtkGdcmReader.[cxx|h] : bug fix concerning loading of bad dicom
635 files. Added method to remove all files on the input
636 Added FIXME comment concerning the bad parsing of header made by
637 ExecuteInformation method (in ExecuteData method)
639 2003-07-03 Eric Boix <Eric.Boix@creatis.insa-lyon.fr>
640 * vtk/Makefile.am: vtkGdcmReader.h should now be cleany installed
641 when using make instal.
642 * src/gdcmFile.cxx : bug fix under Window after JPR commit
643 RQ : the JPR doesn't appear in the ChangeLog... normal for him
645 2003-07-03 Benoit Regrain <Benoit.Regrain@creatis.insa-lyon.fr>
646 * setup.py : adding include dir of jpeg lib to compile all sources
647 * */Win32/*.dsp : JPR fix for windows compilation
649 2003-07-02 Benoit Regrain <Benoit.Regrain@creatis.insa-lyon.fr>
650 * src/jpeg/libijg8/jconfig.* : JPR bug fix : now compile on both
652 * src/gdcmJpeg.cxx : JPR bug fix : erroneous include
653 * src/win32/gdcmdll.dsp : JPR fix for windows compilation
655 2003-07-02 Eric Boix <Eric.Boix@creatis.insa-lyon.fr>
656 * setup.py is again effective on un*x (takes into account the
657 addon of the jpeg library)
658 * Doc/DoxyDevelInstal.txt added (developper's raw documentation)
659 * Doc/Doxy* updated (includes above enhancements)
660 * INSTALL now points to web documentation
662 2003-07-01 Eric Boix <Eric.Boix@creatis.insa-lyon.fr>
663 * src/gdcmHeader.h doesn't make unnecessary reference to
665 * gdcmPython/Makefile.am now avoids calling the wrappers for the
667 * src/gdcm*.[cxx|h] :
668 - to allow compilation with gcc 3.x
669 -- clean up of STL usage (added explicit usage of std::)
670 -- small fixes on exceptions.
671 Note: linking not tested !
672 - clean of doxygen comments to avoid warnings at documentation
674 * vtk/vtkGdcmReader.cxx: g++ warning message clean up (platform
675 dependent convertion).
677 2003-06-20 Eric Boix <Eric.Boix@creatis.insa-lyon.fr>
678 * Clean up of previous JPR garbage commit (not even commented in the
680 - Test/Makefile.am removed the reference to unexisting testTS.cxx
681 - moved all jpeg related files from src to src/jpeg/libijg8, with
682 addition/modification of Makefile.am and configure.in.
683 - the testSuite is still brain damage (not guilty).
685 2003-06-02 Benoit Regrain <Benoit.Regrain@creatis.insa-lyon.fr>
686 * WrapVTK.py : modifications to get correctly vtk source files to
688 * vtk/vtkGdcmReader.cxx : modification for an already existing name
689 (FileName -> Filename)
691 2003-06-11 Eric Boix <Eric.Boix@creatis.insa-lyon.fr>
692 * vtk/vtkGdcmReader.[cxx/h]:
693 - UpdateProgress method should now be effective
694 - removed the limitation on having only images loaded (as opposed
696 - when building a stack of images/volume, a lesser number of
697 gdcmHeader and gdcmFile instances should be used (hopefully
698 accelerating things).
699 - when building a stack of images/volumes, files which are not
700 loadable (wrong path-filename, wrong permissions on existing file,
701 or file not parsable by gdcm) are replaced with a black image
702 in the stack (for the caller to notice the problem).
704 2003-06-03 Eric Boix <Eric.Boix@creatis.insa-lyon.fr>
705 * vtk/vtkGdcmReader.cxx: hopefully corrected Z extent.
707 2003-06-02 Benoit Regrain <Benoit.Regrain@creatis.insa-lyon.fr>
708 * vtk/vtkGdcmReader[cxx|h] : makes correct code to remove conflicts
709 between standard library (std) and vtk library (problems are found
710 under Windows... thanks Windows !)
712 2003-05-30 Eric Boix <Eric.Boix@creatis.insa-lyon.fr>
713 * vtk/vtkGdcmReader[cxx|h] should now be volume aware (read ready for
715 * gdcmPython/demo/vtkGdcmReader.py: commented lines for volume test
717 2003-05-29 Eric Boix <Eric.Boix@creatis.insa-lyon.fr>
718 * vtk/vtkGdcmReader[cxx|h] preparation addons for loading volumes.
720 2003-05-28 Eric Boix <Eric.Boix@creatis.insa-lyon.fr>
721 * When compiling with distutils (see setup.py) the C++ compiler is
722 called with different flags than the default ones (with automake).
723 In order to fix all those warning, I compiled gdcm with the command
724 make 'CXXFLAGS=-Wall -Wstrict-prototypes -D__STDC_LIMIT_MACROS'
725 and went for warning fixes:
726 - src/gdcmHeader.cxx, Test/dcm2acr.cxx, pourFindTaggs.cxx cleaned
727 up from unused variables.
728 - vtk/vtkGdcmReader.cxx: potential bug fix.
729 * src/gdcmHeader.h: Doxygen warning cleanup
731 2003-05-27 Eric Boix <Eric.Boix@creatis.insa-lyon.fr>
733 - typemaps correction to take into account the systematic replacement
734 of "using namespace std" with std:: prefix e.g. std::list,
735 std::string... (cf changes of 2003-05-21).
736 - gdcmGlob global variable of type gdcmGlobal (defined in
737 src/gdcmUtil.cxx and declared in gdcmPython/gdcm.i) is now
738 exported to Python a as cvar.
739 * gdcmPython/__init__.py now defines two functions GetPubDictTagNames()
740 and GetPubDictTagNamesByCategory() as a replacement for deprecated
741 gdcmDictSet.GetPubDictTagNames() and
742 gdcmDictSet.GetPubDictTagNamesByCategory() class functions (i.e.
744 * gdcmPython/demo/printGroupedPublicDict.py is operational again,
745 with the above changes.
747 2003-05-22 Benoit Regrain <Benoit.Regrain@creatis.insa-lyon.fr>
748 * setup.py, manifest.in : bug fix under linux
750 2003-05-22 Benoit Regrain <Benoit.Regrain@creatis.insa-lyon.fr>
751 * Modification of setup.py to compile vtk part too. Then, we have 2
752 wrappers which must work with same distutils. For that, we have a
753 generic distutils in distusiltsWrapping.py ; with :
754 - build_extWrap class to wrap generically all extensions,
755 - ExtensionWrap base class for all wrapping extension that contains
757 - Wrapper interface which wrap sources
758 + In WrapSwig.py we have extension and wrapper for Swig
759 + In WrapVTK.py we have extension and wrapper for VTK
760 * MANIFEST.in : modifications to consider vtk directory and new python
761 files for compilation
763 2003-05-21 Eric Boix <Eric.Boix@creatis.insa-lyon.fr> with Benoit Regrain
764 * Added python wrappers of vtkGdcmReader vtk class (see the
765 source in vtk/vtkGdcmReader.cxx) :
766 - vtk/Makefile.am now builds a library
767 - gdcmPython/Makefile.am now builds vtkgdcmPython a second import
768 python library (as opposed to _gdcm.so wich are the python
769 wrappers of gdcm). vtkgdcmPython.so uses the vtk python wrappers
770 (vtkWrapPython and vtkWrapPythonInit utility) to build vtkgdcmPython
772 - configure.in has an additional flag --enable-vtk that needs
773 to be set to enable compilation of vtk related code, that is:
774 + vtk/vtkGdcmReader.so and
775 + vtk/testvtkGdcmReader C++ demo of vtk wrappers of gdcm)
776 + gdcmPython/vtkgdcmPython.so (see above)
777 - gdcmPython/demo/vtkGdcmDemo.py corrected (some images cannot
778 be read when compressed or when HighBit + 1 != BitsStored),
779 - gdcmPython/demo/vtkGdcmReader.py added. This demo illustrates
780 the usage of the python wrapper of vtkGdcmReader vtk class.
781 * vtk/vtkGdcmReader.cxx: bug fixed (thanks to Benoit Regrain).
782 * src/*.[h] all occurences of stl classes are now prefixed with
783 std::, and all occurences of "using namespace std;" where removed.
784 This is to avoid pollution of global namespace in included files.
785 Apparently vtk does not avoid this pitfall: when using both
786 gdcm and vtk (as in vtk/vtkGdcmReader.cxx) this ended up in a
787 collision of various stl members (principally cout...).
788 * gdcmPython/testSuite.py now cleanly removes temprory generated
790 * gdcmPython/gdcm.i now declares a typemap for std::string (to
791 comply with above changes)
793 2003-05-12 Eric Boix <Eric.Boix@creatis.insa-lyon.fr> with JPR
794 * src/gdcmHeader>[h/cxx] added gdcmHeader::GetPixelSize()
795 * vtk/vtkGdcmReader.cxx now properly inports the image in the
796 vtk data structure (an image Flip was required).
797 * vtk/testvtkGdcmReader.cxx refers to gdcmData subdir instead of Data.
798 * cosmetic changes in documentation.
800 2003-05-7 Eric Boix <Eric.Boix@creatis.insa-lyon.fr> with JPR
801 * src/gdcmHeader.cxx: the constructor no longer exits when an
802 unexisting file is given as argument.
803 * The subdirectory Data (containing all the images used for the
804 test suite) is not part of this repository anymore. A new module
805 containing those images is now available at
806 :pserver:xxx@cvs.creatis.insa-lyon.fr:2402/cvs/public
807 with the name gdcmData.
808 All the python scripts (including the package initialisation file
809 gdcmPython/__init__.py) were adapated to take this change into
810 account (basically GDCM_DATA_PATH is now GDCM_TEST_DATA_PATH).
812 2003-05-5 Eric Boix <Eric.Boix@creatis.insa-lyon.fr> with JPR
813 * vtk subdir added. Contains vtkGdcmReader.[cxx|h] a vtk class
814 inherinting from vtkImageReader and testvtkGdcmReader.cxx a small
815 demo of the usage of this class.
816 Compilation of this vtk part is only done when using the --enable-vtk
817 at configure (or autogen.sh) stage.
819 2003-04-16 Eric Boix <Eric.Boix@creatis.insa-lyon.fr> with JPR
820 * More memory link related corrections and documentation fixes.
822 - maximum info is obtained with a command of the form:
823 valgrind --leak-check=yes --leak-resolution=high --num-callers=40
824 --show-reachable=yes PrintHeader
825 - the remaining reachable blocks seem to come from the STL
826 allocation scheme through the usage of map and list. It looks
827 like this memory cannot be freed but it is not a memory leak
828 (in fact further invocation to the STL would recollect the
829 unused memory allthough it cannot explicitely be freed).
830 * gdcmPython/demo/vtkGdcmDemo.py added: this is a small demo
831 of displaying an image parsed with gdcm and displayed with VTK.
832 Note: some images don't seem to work e.g.
833 python vtkGdcmDemo.py ../../Data/US-RGB-8-esopecho.dcm
834 * src/gdcmHeader.x: dicom_vr and Dicts are not class members anymore.
835 Allthough this weakens the semantics, it is a ditch attempt to
836 make gdcm more thread friendly.
838 2003-04-15 Eric Boix <Eric.Boix@creatis.insa-lyon.fr> with JPR
839 * Memory link hunt (by using valgrind through the command
840 valgrind --show-reachable=yes --leak-check=yes PrintHeader).
841 - added src/gdcmVR.cxx gdcmVR.h that objectify the previous
842 gdcmHeader::_dicom_vr.
843 - gdcmHeader::InitVRDict transfered as gdcmVR::gdcmVR().
844 - gdcmHeader::dicom_vr is now of type gdcmVR* as opposed to
846 - gdcmGlobal global object contained class added (see src/gdcmUtil.x)
848 2003-04-9 Eric Boix <Eric.Boix@creatis.insa-lyon.fr> with JPR
849 * src/Makefile.am now exports all the necessary include files at
853 * UpdateGroupLength replaced by new one
856 * UpdateGroupLength re-written using H-Table
857 (named UpdateGroupLengthNew untill checks are over)
859 2003-04-7 Eric Boix <Eric.Boix@creatis.insa-lyon.fr> with JPR
860 * Data/im_00001 renamed to gdcm-MR-PHILIPS-16-Multi-Seq.dcm
861 * gdcmPython/testSuite.py now include a test of gdcmFile::Write.
863 - gdcmHeader::GetPubElValSet removed.
864 - gdcmElValSet::WriteDcm, WriteAcr, WriteExplVR, revamped to
865 UpdateGroupLength, WriteElements, Write.
866 - gdcmHeader::FileType moved to gdcmCommon.h. The enum FileType
867 doesn't contain TrueDicom anymore since ExplicitVR and ImplicitVR
868 carried the same semantics.
869 - src/gdcmHeaderIdo.cxx changed accordingly.
870 - gdcmFile::WriteBase now regroups all the codes from previous
871 versions of WriteDcm, WriteDcmImplVR, and WriteACR.
872 - enum FileType moved to gdcmCommon.h
873 * src/gdcmHeader.cxx AddDefault trashed
875 * getimageDataSize now calls gdcmGetXSize
876 * Test/*.cxx changed to agree with above changes
878 2003-03-31 Eric Boix <Eric.Boix@creatis.insa-lyon.fr>
879 * src/gdcmHeader.h: LoadElements() is not a public method anymore
880 (to avoid double call by end user).
881 * Test/*.cxx LoadElements() doesn't need to be called explicitely
882 by end user, since gdcmHeader::gdcmHeader now handles it.
884 2003-03-29 Eric Boix <Eric.Boix@creatis.insa-lyon.fr>
885 * gdcm/Doc many doxygen changes:
886 - Doxyfile now has two different versions, DoxyfileUsers that generates
887 the html.users end users oriented documentation and
888 DoxyfileDeveloppers that generates the html.developper developper
889 oriented documentation.
890 - README changed accordingly
891 - requirement.txt removed (old design info moved to TODO).
892 - Additional files DoxyInstallation.txt, DoxyIntroduction.txt,
893 DoxyMainPage.txt, DoxyPython.txt provide more information.
894 - Note: the website http://www.creatis.insa-lyon.fr/Public/Gdcm/ can now
895 be updated by simply regenerating the docs with doxygen and copying
896 html.developper and html.users to tux:/home/httpd/html/Public/Gdcm
897 * src/gdcmElValSet.cxx: stl <map>.count() can only return 0 or 1. Hence
898 all the tests in the form "if (<map>.count() >1)" were removed.
899 * src/gdcmFile.cxx: cosmetic changes to avoid messages of doxygen about
900 ill-formed documentation sections.
901 * src/gdcmHeader.cxx: ditto
903 2003-03-27 Eric Boix <Eric.Boix@creatis.insa-lyon.fr>
904 * setup.py fixed for un*x (needed macro for stdint.h)
905 * Test/test.cxx renamed to PrintHeader.cxx to avoid collision on
906 un*ces with sh-utils test utility.
907 * gdcmPython/demo/test.py renamed to PrintHeader.py
908 * gdcmPython/demo/ReorganiseFiles.py new demo script added.
909 * gdcmPython/win32/gdcmpycomplet.dsp renamed to gdcmpyembedded.dsp.
910 * gdcmPython/win32/gdcmpy.dsp trashed away (brain damaged).
911 * src/gdcm*.cxx JPR's bad inclusion fixed.
913 2003-03-26 Eric Boix <Eric.Boix@creatis.insa-lyon.fr>
914 * src/gdcmHeader[h, cxx] gdcmHeader now has an IsReadable predicate.
915 * gdcmPython/demo/test.py changed accordingly.
917 2003-03-25 Eric Boix <Eric.Boix@creatis.insa-lyon.fr>
918 * gdcmPython/Makefile.am fixed linking against libstdc++
919 * gdcmPython/_gdcm.so symbolic link to gdcmPython/.libs/pygdcm.so added.
920 * Swig subdir (historical tests of swig version 1.3.17++) removed
921 * Test/testChangeEntete.cxx some lines commented out in order to make
923 * src/gdcmHeader.cxx cleaned up wild JPR's dirty kludge.
924 * src/gdcmElValSet.cxx cleaned up frog's forgotten debug message
926 2003-03-24 Eric Boix <Eric.Boix@creatis.insa-lyon.fr>
927 * src/gdcmHeader.cxx gdcmHeader::gdcmHeader now calls LoadElements(),
928 hence the user doesn't need this explicit call.
929 - gdcmPython/testSuite.py, gdcmPython/demo/*.py changed accordingly
930 i.e. LoadElements() call removed.
931 * src/gdcmCommon.h now defines UINT32_MAX (see stdint.h).
932 - src/Makefile.am declares the proper flag for g++.
933 * src/gdcmElValSet.h added gdcmElValSet::GenerateFreeTagKeyInGroup
934 for adding user defined new tags.
935 - src/gdcmHeader.cxx gdcmHeader::NewManualElValToPubDict added.
936 - src/gdcmHeader.cxx gdcmHeader::AddAndDefaultElements now
937 cleanly adds some gdcm added tags (like gdcmXSize, gdcmYSize...)
939 2003-03-17 Fabrice Bellet <Fabrice.Bellet@creatis.insa-lyon.fr>
940 * Makefile.am, acinclude.m4, configure.in, python.m4, Dicts/Makefile.am,
941 Doc/Makefile.am, Test/Makefile.am, gdcmPython/Makefile.am,
942 src/Makefile.am : the project should properly compile and install
943 with the autotools, included the python wrappers part.
944 * gdcm.spec.in : added a spec file for RPM packaging.
946 2003-03-14 Benoit Regrain <Benoit.Regrain@creatis.insa-lyon.fr>
947 * src/gdcmUtils.cxx : redifinition of defaults parameters in code
949 2003-03-12 Eric Boix <Eric.Boix@creatis.insa-lyon.fr>
950 * gdcmPython/__init__.py fix of GDCM_DICT_PATH which was not
951 to exported to the environement (see gdcmPython/testSuite.py
953 * src/gdcmElValSet.[cxx/h], gdcmElValue.[cxx/h], gdcmFile.[cxx/h],
954 gdcmHeader.[cxx/h]: ElValSet class renamed to gdcmElValSet, and
955 ElValue class renamed to gdcmElValue for obvious consistency reasons.
956 * src/gdcmElValSet.cxx, src/gdcmUtil.[cxx-h] Tokenize utility function
957 moved away from gdcmElValSet.cxx to gdcmUtil.cxx.
959 2003-03-10 Eric Boix <Eric.Boix@creatis.insa-lyon.fr>
960 * gdcmPython/__init__.py doesn't crash anymore when running in
961 in InstallMode or PreInstallMode but with an environement given
962 value of GDCM_DICT_PATH.
963 * src/gdcmDictSet.[cxx/h] coding style.
965 2003-03-06 Eric Boix <Eric.Boix@creatis.insa-lyon.fr>
966 * src/gdcmHeader.h and gdcmHeader.cxx Coding style + doxigenation.
967 * src/gdcm.h general comments moved to TODO, and README
968 * src/gdcm.h should now be seen as a user commodity (including it
969 should suffice to fully use gdcm). It is nowhere including within
970 any of the kernel files src/*.cxx and src/*.h.
972 2003-03-05 Eric Boix <Eric.Boix@creatis.insa-lyon.fr>
973 * src/gdcm.h splitted in gdcmCommon.h, gdcmDict.h, gdcmDictEntry.h,
974 gdcmDictSet.h, gdcmElValSet.h, gdcmElValue.h, gdcmFile.h,
976 * src/gdcm*.cxx only include their corresponding include file
977 (as opposed to gdcm.h)
978 * gdcmPython/gdcm.i changed accordingly
979 * Test/Makefile.am corrected and added NEWS, AUTHORS in order for
980 the autogen.sh generated "make snapshot" command to work.
981 * autogen.sh removed history related references to crea package.
983 2003-03-04 Eric Boix <Eric.Boix@creatis.insa-lyon.fr>
984 * distutilsSwigCPlusPlus.py work around some swig portability
987 2003-03-03 Eric Boix <Eric.Boix@creatis.insa-lyon.fr>
988 * Eventually, python/gdcmPython was renamed to gdcmPython. This
989 was done in a last ditch attempt to get setup.py _really_
990 operationnal. The python/gdcmPython layaout add the advantage
991 of hidding away the python related distutils specific files
992 (MANIFEST.in, setup.py, distutils*.py...) from the main directory.
993 Alas, the src directory was out of scope (i.e. it's relative
994 position to setup.py was ../src) which made things impossible to
995 handle (see previous version of python/setup.py). Crossing fingers...
997 2003-02-20 Eric Boix <Eric.Boix@creatis.insa-lyon.fr>
998 * python/setup.py now works on Un*x. (harder than I thougth)
999 * python/distutilsSwigCPlusPlus.py can now have include files
1000 among the list of sources.
1002 2003-02-20 Benoit Regrain <Benoit.Regrain@creatis.insa-lyon.fr>
1003 * src/gdcmHeader.cxx : bug fix - opening dicom file in binary !!!
1004 * modifications in MSVC projects
1006 2003-02-19 Eric Boix <Eric.Boix@creatis.insa-lyon.fr>
1007 * As stated by the first lines of Test/ExceptionAndPython/README, it
1008 looks like we can move back to original usage of exception within
1009 src/gdcm* and hence remove the errno stuff that was introduced
1010 as a quick and dirty fixture of this problem (added to the TODO).
1011 * Doc/Doxyfile configuration file for Doxygen and corresponding
1012 README file for usage added.
1013 * Test/testWrite.cxx added. This new test comes from a split of
1014 test.cxx that is now reverted to its original purpous i.e.
1015 testing the proper parsing of a Dicom related file.
1016 testWrite.cxx concentrates on testing the IO part of gdcm.
1017 * Test/bug1.cxx (containing a bug on WIn32) added.
1018 * src/gdcm.h, gdcmHeader.cxx, gdcmDictSet.cxx:
1019 - gdcmHeader::GetPubTagNames and gdcmHeader::GetPubTagNamesByCategory
1020 whose purpose is to publish the content of the TagNames of the
1021 Dicom public dictionnary were not accessible without an
1022 instance of class gdcmHeader.
1023 - those methods are now static methods of gdcmDictSet and hence
1024 require no instances at all to be invocated.
1025 - within gdcmDictSet this change required to change some method
1026 to class methods (i.e. are now static) among which SetDictPath
1027 (renamed to BuildDictPath) and LoadDefaultPubDict.
1028 * python/gdcmPython/demo/printGroupedPublicDict.py changed to illustrate
1029 the above changes by calling the new method classes of gdcmDictSet.
1030 * python/gdcmPython/__init__.py now exposes gdcm.gdcmDictSet for
1031 the above to be effective.
1032 * python/gdcmPython: in order to wrap properly the above changes
1033 for Python, swig version now needs to be > 1.3.17.
1034 * python/gdcmPython/Makefile fixed to adapt itself to new
1035 configure/make shema introduced by Johan Montagnat (thanks for the
1036 contribution). Alas this Makefile cannot be turned into a proper
1037 Makefile.am without some heavy changes in the configure.in
1038 (for python dectection).
1039 * python/gdcmPython/gdcm.i: the out typemap map<string, list<string>>*
1040 now avoids publishing the empty entries.
1042 2003-02-13 Benoit Regrain <Benoit.Regrain@creatis.insa-lyon.fr>
1043 * python/setup.py : bug fix concerning install under windows
1044 ExtraPath reused :-P
1045 * gdcm.dsw : bug fix concerning path for libraries for python !!!
1047 2003-02-13 Benoit Regrain <Benoit.Regrain@creatis.insa-lyon.fr>
1048 * Dicts/dicomV3.dic : remove double spaces !!!
1049 * src/gdcmElValSet.cxx : bug fix concerning windows compiler
1050 * python/gdcmPython/win32/gdcmpycomplet.dsp : bug fix concerning paths
1053 2003-01-28 Eric Boix <Eric.Boix@creatis.insa-lyon.fr>
1054 * src/gdcmHeader.cxx added a post header parsing AddAndDefaultElements
1055 method. Doxygenation.
1056 * src/gdcm.h clean up of JPR spurious comments.
1058 2003-01-17 Eric Boix <Eric.Boix@creatis.insa-lyon.fr>
1059 * python/distutilsSwigCPlusPlus.py now properly collects the
1060 shadow classes generated by "swig -c++" (gdcm.py in our case)
1061 when using "python setup.py install".
1062 * python/gdcmPython/__init__.py imports gdcm.py and only manually
1063 reexports the working classes.
1064 * src/gdcmHeader.cxx all the try/catch/throw calls were replaced
1065 by the classical C errno scheme. This is to prevent an obscure
1066 behavior of the python wrappers when importing wxPython.wx prior
1067 to gdcmPython (which ended up in an abort call). An illustration
1068 of this oddity can be found in the Test/ExceptionAndPython
1069 subdir (see the README file). This problem probably due to
1070 an combination of g++ and dynamic loading.
1071 * added Test/ExceptionAndPython (see above)
1073 2003-01-17 Eric Boix <Eric.Boix@creatis.insa-lyon.fr>
1074 * Changed the layout of the python part to avoid bloating main
1075 directory with setup.py, distutilsSwigCPlusPlus.py, MANIFEST.in
1076 i.e. the distutils arsenal. All the python related stuff is
1077 again in a python subdir, but the package itself is now in
1079 * setup.py was cleaned up:
1080 - pythonIncludePath removed
1081 - python setup.py bdist target is now functional.
1082 * gdcmPython/__init__.py doesn't export FileName any more (to avoid
1083 collision with other packages). gdcmPython/demo/*.py changed
1086 2003-01-15 Eric Boix <Eric.Boix@creatis.insa-lyon.fr>
1087 * python subdir moved to gdcmPython (preparation of distutils packaging).
1088 * gdcmPython/setup.py and distutilsSwigCPlusPlus.py added. The
1089 distutils installer is operational.
1090 * - gdcmPython/__init__.py now properly loads the swig generated
1091 shadow classes (from gdcm.py).
1092 - gdcmPython/demo/*.py changed to import the package gdcmPython
1093 instead of gdcmPython/demo/load.py.
1094 - gdcmPython/testSuite.py changed to import the package gdcmPython.
1096 2002-12-16 Eric Boix <Eric.Boix@creatis.insa-lyon.fr>
1097 * src/gdcm.h, src/gdcmHeader.cxx: added GetPubTagNames() resp.
1098 GetPubTagNamesByCategory() to gdcmHeader that return a list of the
1099 entries within the associated public Dicom dictionary resp. the same
1100 information but sorted by the fourth field (PAT, IMG, DIR) of the
1102 - Dicts/dicomV3.dic Entries which had and unspecified fourth field
1103 are now in the "???" group.
1104 - python/gdcm.i changed accordingly,
1105 - python/demo/printGroupedPublicDict.py added, that gives an example
1106 of the above new functionalities in Python.
1108 2002-12-11 Eric Boix <Eric.Boix@creatis.insa-lyon.fr>
1109 * src/gdcm.h, gdcmHeader.cxx:
1110 - historic references to glib's g_malloc and g_free (#defined)
1111 were definitively removed.
1112 - gdcm.h: cosmetic changes (part of comments moved to Doc/requirements)
1113 * src/gdcmElValSet.cxx:
1114 - GetElement(guint32, guint32) renamed to GetElementByNumber.
1115 - GetElValue(guint32, guint32) renamed to GetElValueByNumber.
1116 - GetElValue(string) renamed to GetElValueByName.
1117 - Added GetElementByName(string).
1118 * src/gdcmHeader.cxx: added
1119 - GetPubElValRepByNumber(guint16, guint16)
1120 - GetPubElValRepByName(string)
1121 - GetShaElValRepByNumber(guint16, guint16)
1122 - GetShaElValRepByName(string)
1123 - GetShaElValByNumber(guint16, guint16)
1124 - GetShaElValRepByName(string)
1125 - GetElValRepByNumber(guint16, guint16)
1126 - GetElValRepByName(string)
1127 - GetElValByNumber(guint16, guint16)
1128 - GetElValRepByName(string)
1129 * Doc/requirements.txt added.
1131 2002-12-9 Eric Boix <Eric.Boix@creatis.insa-lyon.fr>
1132 * Test/Makefile building now depends on the one of libgdcm.so
1133 * src/gdcmHeader.cxx and gdcm.h are now OB (undefined length encoded
1134 pixel data) aware which enables finding the address (offset) of
1135 the pixel data of JPEG encoded DICOM files. This leaves only a single
1136 file in the testSuite whose pixel data address (offset) is unknown.
1137 * python/testSuite.py changed accordingly.
1139 2002-12-6 Christophe Odet + Hugues Benoit-Cattin + Eric.Boix
1140 * VC++ has some strong limitations when working with the STL, as stated
1141 in http://support.microsoft.com/support/kb/articles/Q168/9/58.ASP :
1142 "Also note that some STL containers (map, set, queue, list, deque)
1143 cannot be exported. [...]
1144 Some STL classes contain nested classes. These classes can not
1146 This is caused by a designed limitation that once a template
1147 class is instantiated, it can not be re-instantiated and
1149 Since our usage of map<> is ubiquitous in gdcm, this "designed
1150 limitation" of VC++ is a pitfall.
1151 Hence the Python wrappers of gdcm cannot be incrementally linked
1152 against the c++ dynamic library. The dirty but only workaround is
1153 to forget about incremental link of dynamic libraries and to generate
1154 the Python wrappers library with the inclusions of the underlying C++
1156 The following modifications concern this matter on Win32/VC++:
1157 - wrapping python correct with standalone wrapped dll (don't use separate
1158 dll under windows !!!!)
1159 - python21_d debug mode enabled (ask Frog how to use it :-)
1160 - NO problem with having an STL member of class for example string in C++
1161 WITH THE RESTRICTION OF FORGETING ABOUT INCREMENTAL LINK.
1162 - Python test of dcmlib in Python is ok under windows on a large set
1164 * removed glib references
1165 * typedef's inserted in gdcm.i for correct swig type management
1167 2002-11-27 Eric Boix <Eric.Boix@creatis.insa-lyon.fr>
1168 * python/demo/*.py load.py extracted from test.py. Added explore.py
1169 that only displays required tags and testAll.py that parses all
1170 the files of the testsuite without using unittest.
1171 * python/testSuite.py other additional test on new files added.
1172 * Data/* new test files added accordingly to the testSuite.
1173 * src/gdcmHeader.cxx avoid overwriting of the dictionary when
1174 the vr in the file differs from the one of the dictionary.
1176 2002-11-20 Eric Boix <Eric.Boix@creatis.insa-lyon.fr>
1177 * src/gdcm.h and gdcmHeader.cxx gdcm no longer loads all the elements
1178 values, but limits itself to values which are below a user specified
1179 size (by default 1024 bytes).
1180 * python/gdcm.i : elements not loaded (because their size is above the
1181 user specified treshold) are exported with their TagKey as key of the
1182 python dictionary. This enables the testsuite to make some checks
1183 on the unloaded elements (since we have their offset and size).
1184 * python/testSuite.py
1185 - now tests for the existence and proper value of the pixel data
1186 - two new examples added.
1187 * Data/gdcm-MR-SIEMENS-16.acr[12] added.
1189 2002-11-18 Eric Boix <Eric.Boix@creatis.insa-lyon.fr>
1190 * src/gdcm.h and gdcmHeader.cxx are now "Big Endian transfer syntax"
1191 aware. See the strategy comments in gdcmHeader::FindeLength().
1192 * Test/test.cxx now accepts a filename as first argument.
1193 * Data/US-PAL-8-10x-echo.dcm and US-RGB-8-epicard.dcm added.
1194 * python/testSuite.py changed to integrate test on above files.
1196 2002-11-15 Eric Boix <Eric.Boix@creatis.insa-lyon.fr>
1197 * Dicts/dicomV3.dic removed all the trailing (RET) when the
1198 the vr was also RET.
1199 * python/testSuite.py more tests added.
1201 2002-11-14 Eric Boix <Eric.Boix@creatis.insa-lyon.fr>
1202 * python/testSuite.py unittest test suite added (uses Data)
1203 * Data/* dcm and acr files for the test suite.
1204 * glib dependance removed from un*x version. We now use ISO C99
1205 7.18 Integer types (see stdint.h)
1206 - python/Makefile, src/Makefile src/gdcm.h
1207 * src/ when an explicit vr (like dicom files) suddenly poped an
1208 implicit element we use to mark the underlying DictEntry of the
1209 concerned ElValue with "Implicit". This strategy was damageable
1210 too the public or provite dictionaries, since some of their vr
1211 would be changed. Since Header::FindLength heavily relies on the
1212 detection by Header::FindVR of falsely explicit elements, I
1213 added an extra ImplicitVr member to ElValue (boolean).
1214 The rest of the changes we the necessary adaptations.
1216 2002-11-12 Eric Boix <Eric.Boix@creatis.insa-lyon.fr>
1217 * src/gdcmHeader::FindLength bug fix when trapping falsely explicit
1219 * src/gdcmHeader::FindVR: hard way fix of falsely explicit vr files.
1221 2002-11-8 Eric Boix <Eric.Boix@creatis.insa-lyon.fr>
1222 * Adaptation for porting to VC++:
1224 o forced to use std namespace (for string to be known)
1225 o all class use __declspec export style on WIN32
1226 - src/gdcmUtil.cxx new Exit method that wraps the exit call
1227 (in stdlib.h on Win32 but in std:: for gcc)
1228 * src/gdcmDictSet::SetDictPath adds a trailing / to environement
1229 variable GDCM_DICT_PATH.
1230 * src/gdcmHeader.cxx verbose comments made discrete.
1232 2002-11-7 Eric Boix <Eric.Boix@creatis.insa-lyon.fr>
1233 * python/gdcm.i: added a typemap that converts a C++ hashing table
1234 to native Python dictionary.
1235 * python/demo/test.py:
1236 - now uses the native dictionary for exploration of gdcmHeader.
1237 - takes an optional filename argument (the file to parse).
1238 * src/gdcm.h and gdcmHeader.cxx: gdcmHeader now has an accessor on
1239 PubElVals hashing table.
1240 * Dicts/dicomV3.dic removed error prone trailing spaces.
1242 2002-11-6 Eric Boix <Eric.Boix@creatis.insa-lyon.fr>
1243 * Python wrapping process moved away from src/Makefile to
1244 newly created python/Makefile (as well as gdcm.i)
1245 * python/demo/test.py (that mirrors Test/test.cxx) is effective.
1246 * src/gdcmHeader::FindLength only looks for current vr when necessary.
1247 * src/gdcmDictSet.cxx: the dictionnaries directory path is now imported
1248 from the environement variable GDCM_DICT_PATH (when existing).
1249 * src/gdcmDict::GetTag bug fix.
1251 2002-10-31 Eric Boix <Eric.Boix@creatis.insa-lyon.fr>
1252 * Straightforward temporary fixes for swig to build the python wrappers.
1253 src/Makefile now has a python working entry [by working we mean
1254 that we can import de shadow classes without errors].
1256 2002-10-29 Eric Boix <Eric.Boix@creatis.insa-lyon.fr>
1257 * hashtest.cxx removed (since allready in Test)
1258 * src/gdcmlib.h renamed to src/gdcm.h
1259 * src/dcm.i renamed to src/gdcm.i
1260 * src/Makefile prepared for python wrapping
1262 2002-10-29 Eric Boix <Eric.Boix@creatis.insa-lyon.fr>
1263 * src/gdcmHeader.cxx :
1264 - Parsing of header is now separated from loading of element values
1265 (see gdcmHeader::LoadElements).
1266 - general clean up of hopefully all file access (creation of
1267 ReadInt16 and ReadInt32)
1269 2002-10-22 Eric Boix <Eric.Boix@creatis.insa-lyon.fr>
1270 * src/gdcmHeader.cxx :
1271 - RecupLgr renamed to FindLength and cut off with new IsAnInteger
1273 - SetLgrElem renamed to SetLength
1274 - GetLgrElem renamed to GetLength
1275 - ~gdcmHeader() made virtual to pesky warning messages at compile.
1276 * src/gdcmElValSet.cxx fixed both GetElValue methods
1277 * Dicts/dicomV3.dic falacious entry [7fe0 0010 OT PXL Pixel Data]
1278 due to IdoDude was cleaned out.
1280 2002-10-21 Eric Boix <Eric.Boix@creatis.insa-lyon.fr>
1281 * src/gdcmHeader.cxx RecupLgr split in FindVR and RecupLgr. FindVR
1282 concentrates on finding the value representation (when it exists).
1283 RecupLgr now only finds the element value length, and it avoids
1284 returning the unecessary skL (skipped length).
1285 Also, offsetCourant was simply removed (with taille_fich) since
1286 it was redundant with the File position internals (by using
1287 ftell and fseek). This also made skL (see above in RecupLgr) usage
1289 * src/gdcmHeaderIdo.cxx src/gdcmIdo.h added. Those files concentrate
1290 on the libido specificities which are handled through class
1292 * Test/implicit_vr.dcm dicom v3 in implicit value representation
1295 2002-10-17 Eric Boix <Eric.Boix@creatis.insa-lyon.fr>
1296 * Truckload of changes. Parsing of header is barely functional
1297 (see Test/test) with the standard dictionary (see Dicts/dicomV3.dic).
1299 2002-10-10 Eric Boix <Eric.Boix@creatis.insa-lyon.fr>
1300 * src/gdcmHeader.cxx many addons of low level methods
1302 2002-10-07 Eric Boix <Eric.Boix@creatis.insa-lyon.fr>
1303 * src/gdcmHeader now contains_IdDcmCheckSwap, _IdDcmRecupLgr,
1304 and _IdDcmSWAP_LONG.
1306 2002-09-12 Eric Boix <Eric.Boix@creatis.insa-lyon.fr>
1307 * This corresponds to all the changes decided at the meeting of
1308 May 23 2002. Needless to say we are running late...