1 /*=========================================================================
4 Module: $RCSfile: AnonymizeNoLoad.cxx,v $
6 Date: $Date: 2005/08/22 11:14:27 $
7 Version: $Revision: 1.9 $
9 Copyright (c) CREATIS (Centre de Recherche et d'Applications en Traitement de
10 l'Image). All rights reserved. See Doc/License.txt or
11 http://www.creatis.insa-lyon.fr/Public/Gdcm/License.html for details.
13 This software is distributed WITHOUT ANY WARRANTY; without even
14 the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15 PURPOSE. See the above copyright notices for more information.
17 =========================================================================*/
19 #include "gdcmFileHelper.h"
20 #include "gdcmCommon.h"
21 #include "gdcmDebug.h"
22 #include "gdcmDirList.h"
24 #include "gdcmArgMgr.h"
28 int main(int argc, char *argv[])
31 "\n AnonymizeNoLoad :\n",
32 "Anonymize a gdcm-readable Dicom image even if pixels aren't gdcm readable ",
33 " Warning : Warning : the image is overwritten ",
34 " to preserve image integrity, use a copy. ",
35 "usage: AnonymizeNoLoad {filein=inputFileName|dirin=inputDirectoryName} ",
36 " [rubout=listOfElementsToRubOut] ",
37 " [ { [noshadowseq] | [noshadow][noseq] } ] [debug] ",
38 " inputFileName : Name of the (single) file user wants to anonymize ",
39 " inputDirectoryName : user wants to anonymize *all* the files ",
40 " within the (single Patient!) directory ",
41 " listOfElementsToRubOut : group-elem,g2-e2,... (in hexa, no space) ",
42 " of extra Elements to rub out ",
43 " noshadowseq: user doesn't want to load Private Sequences ",
44 " noshadow : user doesn't want to load Private groups (odd number) ",
45 " noseq : user doesn't want to load Sequences ",
46 " debug : user wants to run the program in 'debug mode' ",
49 // ----- Initialize Arguments Manager ------
51 gdcm::ArgMgr *am = new gdcm::ArgMgr(argc, argv);
53 if (am->ArgMgrDefined("usage") || argc == 1)
55 am->ArgMgrUsage(usage); // Display 'usage'
60 if (am->ArgMgrDefined("debug"))
61 gdcm::Debug::DebugOn();
63 char *fileName = am->ArgMgrGetString("filein",(char *)0);
64 char *dirName = am->ArgMgrGetString("dirin",(char *)0);
66 if ( (fileName == 0 && dirName == 0)
68 (fileName != 0 && dirName != 0) )
71 << "Either 'filein=' or 'dirin=' must be present;"
72 << std::endl << "Not both" << std::endl;
73 am->ArgMgrUsage(usage); // Display 'usage'
78 int loadMode = 0x00000000;
79 if ( am->ArgMgrDefined("noshadowseq") )
80 loadMode |= NO_SHADOWSEQ;
83 if ( am->ArgMgrDefined("noshadow") )
84 loadMode |= NO_SHADOW;
85 if ( am->ArgMgrDefined("noseq") )
90 uint16_t *elemsToRubOut = am->ArgMgrGetXInt16Enum("rubout", &rubOutNb);
92 /* if unused Param we give up */
93 if ( am->ArgMgrPrintUnusedLabels() )
95 am->ArgMgrUsage(usage);
100 delete am; // ------ we don't need Arguments Manager any longer ------
102 if ( fileName != 0 ) // ====== Deal with a single file ======
106 // Parse the input file.
109 f = new gdcm::File( );
110 f->SetLoadMode(loadMode);
111 f->SetFileName( fileName );
112 bool res = f->Load();
114 // gdcm::File::IsReadable() is no usable here, because we deal with
115 // any kind of gdcm::Readable *document*
116 // not only gdcm::File (as opposed to gdcm::DicomDir)
119 std::cout <<std::endl
120 << "Sorry, " << fileName <<" not a gdcm-readable "
121 << "DICOM / ACR Document"
126 std::cout << fileName << " is readable " << std::endl;
129 // No need to load the pixels in memory.
130 // File will be overwritten
135 // Choose the fields to anonymize.
139 f->AddAnonymizeElement( 0x0008, 0x0080, "Xanadoo" );
141 f->AddAnonymizeElement( 0x0010, 0x0010, "g^Fantomas" );
143 f->AddAnonymizeElement( 0x0010, 0x0020,"1515" );
144 // Patient's Birthdate
145 f->AddAnonymizeElement( 0x0010, 0x0030,"11.11.1111" );
147 f->AddAnonymizeElement( 0x0010, 0x1040,"Sing-sing" );
148 // Patient's Mother's Birth Name
149 f->AddAnonymizeElement( 0x0010, 0x1060,"g^Vampirella" );
150 // Study Instance UID
151 f->AddAnonymizeElement( 0x0020, 0x000d, "9.99.999.9999" );
153 f->AddAnonymizeElement(0x0010, 0x2154, "3615" );
155 for (int ri=0; ri<rubOutNb; ri++)
157 printf("%04x,%04x\n",elemsToRubOut[2*ri], elemsToRubOut[2*ri+1]);
158 f->AddAnonymizeElement((uint32_t)elemsToRubOut[2*ri],
159 (uint32_t)elemsToRubOut[2*ri+1],"*" );
162 // Aware use will add new fields here
165 // Overwrite the file
168 std::cout <<"Let's AnonymizeNoLoad " << std::endl;
170 // The gdcm::File remains untouched in memory
172 f->AnonymizeNoLoad();
174 // No need to write the file : modif were done on disc !
175 // ( The Dicom file is overwritten )
176 std::cout <<"End AnonymizeNoLoad" << std::endl;
179 // Remove the Anonymize list
181 f->ClearAnonymizeList();
187 else // ====== Deal with a (single Patient) Directory ======
189 std::cout << "dirName [" << dirName << "]" << std::endl;
190 gdcm::DirList dirList(dirName,1); // gets recursively the file list
191 gdcm::DirListType fileList = dirList.GetFilenames();
192 for( gdcm::DirListType::iterator it = fileList.begin();
193 it != fileList.end();
198 f = new gdcm::File( );
199 f->SetLoadMode(loadMode);
200 f->SetFileName( it->c_str() );
201 bool res = f->Load();
209 // Choose the fields to anonymize.
213 f->AddAnonymizeElement( 0x0008, 0x0080, "Xanadoo" );
215 f->AddAnonymizeElement( 0x0010, 0x0010, "g^Fantomas" );
217 f->AddAnonymizeElement( 0x0010, 0x0020,"1515" );
218 // Patient's Birthdate
219 f->AddAnonymizeElement( 0x0010, 0x0030,"11.11.1111" );
221 f->AddAnonymizeElement( 0x0010, 0x1040,"Sing-sing" );
222 // Patient's Mother's Birth Name
223 f->AddAnonymizeElement( 0x0010, 0x1060,"g^Vampirella" );
224 // Study Instance UID
225 // we may not brutaly overwrite it
226 //f->AddAnonymizeElement( 0x0020, 0x000d, "9.99.999.9999" );
228 f->AddAnonymizeElement(0x0010, 0x2154, "3615" );
230 // deal with user defined Elements set
232 for (int ri=0; ri<rubOutNb; ri++)
234 f->AddAnonymizeElement((uint32_t)elemsToRubOut[2*ri],
235 (uint32_t)elemsToRubOut[2*ri+1],"*" );
237 std::cout <<"Let's AnonymizeNoLoad " << it->c_str() << std::endl;
239 // The gdcm::File remains untouched in memory
240 // The Dicom file is overwritten on disc
242 f->AnonymizeNoLoad();
245 // Remove the Anonymize list
248 f->ClearAnonymizeList();