1 /*=========================================================================
4 Module: $RCSfile: AnonymizeNoLoad.cxx,v $
6 Date: $Date: 2005/07/20 14:48:15 $
7 Version: $Revision: 1.7 $
9 Copyright (c) CREATIS (Centre de Recherche et d'Applications en Traitement de
10 l'Image). All rights reserved. See Doc/License.txt or
11 http://www.creatis.insa-lyon.fr/Public/Gdcm/License.html for details.
13 This software is distributed WITHOUT ANY WARRANTY; without even
14 the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15 PURPOSE. See the above copyright notices for more information.
17 =========================================================================*/
19 #include "gdcmFileHelper.h"
20 #include "gdcmCommon.h"
21 #include "gdcmDebug.h"
22 #include "gdcmDirList.h"
24 #include "gdcmArgMgr.h"
28 int main(int argc, char *argv[])
31 "\n AnonymizeNoLoad :\n",
32 "Anonymize a gdcm-readable Dicom image even if pixels aren't gdcm readable ",
33 " Warning : Warning : the image is overwritten ",
34 " to preserve image integrity, use a copy. ",
35 "usage: AnonymizeNoLoad {filein=inputFileName|dirin=inputDirectoryName} ",
36 " [rubout=listOfPrivateElementsToRubOut] ",
37 " [ { [noshadowseq] | [noshadow][noseq] } ] [debug] ",
38 " inputFileName : Name of the (single) file user wants to anonymize ",
39 " inputDirectoryName : user wants to anonymize *all* the files ",
40 " within the (single Patient!) directory ",
41 " listOfPrivateElementsToRubOut : group,elem (in hexa) of private ",
42 " Elements to rub out ",
43 " noshadowseq: user doesn't want to load Private Sequences ",
44 " noshadow : user doesn't want to load Private groups (odd number) ",
45 " noseq : user doesn't want to load Sequences ",
46 " debug : user wants to run the program in 'debug mode' ",
49 // ----- Initialize Arguments Manager ------
51 gdcm::ArgMgr *am = new gdcm::ArgMgr(argc, argv);
53 if (am->ArgMgrDefined("usage"))
55 am->ArgMgrUsage(usage); // Display 'usage'
60 if (am->ArgMgrDefined("debug"))
61 gdcm::Debug::DebugOn();
63 char *fileName = am->ArgMgrGetString("filein",(char *)0);
64 char *dirName = am->ArgMgrGetString("dirin",(char *)0);
66 if ( (fileName == 0 && dirName == 0)
68 (fileName != 0 && dirName != 0) )
71 << "Either 'filein' or 'dirin' must be present;" << std::endl
72 << "Not both" << std::endl;
77 int loadMode = 0x00000000;
78 if ( am->ArgMgrDefined("noshadowseq") )
79 loadMode |= NO_SHADOWSEQ;
82 if ( am->ArgMgrDefined("noshadow") )
83 loadMode |= NO_SHADOW;
84 if ( am->ArgMgrDefined("noseq") )
89 uint16_t *elemsToRubOut = am->ArgMgrGetXInt16Enum("rubout", &rubOutNb);
91 std::cout << " ---------------------------- rubOutNb " << rubOutNb
93 delete am; // ------ we don't need Arguments Manager any longer ------
96 if ( fileName != 0 ) // ====== Deal with a single file ======
100 // Parse the input file.
103 f = new gdcm::File( );
104 f->SetLoadMode(loadMode);
105 f->SetFileName( fileName );
106 bool res = f->Load();
108 // gdcm::File::IsReadable() is no usable here, because we deal with
109 // any kind of gdcm::Readable *document*
110 // not only gdcm::File (as opposed to gdcm::DicomDir)
113 std::cout <<std::endl
114 << "Sorry, " << fileName <<" not a gdcm-readable "
115 << "DICOM / ACR Document"
120 std::cout << fileName << " is readable " << std::endl;
123 // No need to load the pixels in memory.
124 // File will be overwritten
129 // Choose the fields to anonymize.
133 f->AddAnonymizeElement( 0x0008, 0x0080, "Xanadoo" );
135 f->AddAnonymizeElement( 0x0010, 0x0010, "g^Fantomas" );
137 f->AddAnonymizeElement( 0x0010, 0x0020,"1515" );
138 // Patient's Birthdate
139 f->AddAnonymizeElement( 0x0010, 0x0030,"11.11.1111" );
141 f->AddAnonymizeElement( 0x0010, 0x1040,"Sing-sing" );
142 // Patient's Mother's Birth Name
143 f->AddAnonymizeElement( 0x0010, 0x1060,"g^Vampirella" );
144 // Study Instance UID
145 f->AddAnonymizeElement( 0x0020, 0x000d, "9.99.999.9999" );
147 f->AddAnonymizeElement(0x0010, 0x2154, "3615" );
149 for (int ri=0; ri<rubOutNb; ri++)
151 printf("%04x,%04x\n",elemsToRubOut[2*ri], elemsToRubOut[2*ri+1]);
152 f->AddAnonymizeElement((uint32_t)elemsToRubOut[2*ri],
153 (uint32_t)elemsToRubOut[2*ri+1],"*" );
156 // Aware use will add new fields here
159 // Overwrite the file
162 std::cout <<"Let's AnonymizeNoLoad " << std::endl;
164 // The gdcm::File remains untouched in memory
166 f->AnonymizeNoLoad();
168 // No need to write the File : modif were done on disc !
169 // File was overwritten ...
171 std::cout <<"End AnonymizeNoLoad" << std::endl;
174 // Remove the Anonymize list
176 f->ClearAnonymizeList();
182 else // ====== Deal with a (single Patient) Directory ======
184 std::cout << "dirName [" << dirName << "]" << std::endl;
185 gdcm::DirList dirList(dirName,1); // gets recursively the file list
186 gdcm::DirListType fileList = dirList.GetFilenames();
187 for( gdcm::DirListType::iterator it = fileList.begin();
188 it != fileList.end();
193 f = new gdcm::File( );
194 f->SetLoadMode(loadMode);
195 f->SetFileName( it->c_str() );
196 bool res = f->Load();
204 // Choose the fields to anonymize.
208 f->AddAnonymizeElement( 0x0008, 0x0080, "Xanadoo" );
210 f->AddAnonymizeElement( 0x0010, 0x0010, "g^Fantomas" );
212 f->AddAnonymizeElement( 0x0010, 0x0020,"1515" );
213 // Patient's Birthdate
214 f->AddAnonymizeElement( 0x0010, 0x0030,"11.11.1111" );
216 f->AddAnonymizeElement( 0x0010, 0x1040,"Sing-sing" );
217 // Patient's Mother's Birth Name
218 f->AddAnonymizeElement( 0x0010, 0x1060,"g^Vampirella" );
219 // Study Instance UID
220 // we may not brutaly overwrite it
221 //f->AddAnonymizeElement( 0x0020, 0x000d, "9.99.999.9999" );
223 f->AddAnonymizeElement(0x0010, 0x2154, "3615" );
225 for (int ri=0; ri<rubOutNb; ri++)
227 f->AddAnonymizeElement((uint32_t)elemsToRubOut[2*ri],
228 (uint32_t)elemsToRubOut[2*ri+1],"*" );
230 std::cout <<"Let's AnonymizeNoLoad " << it->c_str() << std::endl;
232 // The gdcm::File remains untouched in memory
234 f->AnonymizeNoLoad();
237 // Remove the Anonymize list
240 f->ClearAnonymizeList();