1 # ---------------------------------------------------------------------
3 # Copyright (c) CREATIS (Centre de Recherche en Acquisition et Traitement de l'Image
5 # Authors : Eduardo Davila, Frederic Cervenansky, Claire Mouton
7 # This software is governed by the CeCILL-B license under French law and
8 # abiding by the rules of distribution of free software. You can use,
9 # modify and/ or redistribute the software under the terms of the CeCILL-B
10 # license as circulated by CEA, CNRS and INRIA at the following URL
11 # http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
12 # or in the file LICENSE.txt.
14 # As a counterpart to the access to the source code and rights to copy,
15 # modify and redistribute granted by the license, users are provided only
16 # with a limited warranty and the software's author, the holder of the
17 # economic rights, and the successive licensors have only limited
20 # The fact that you are presently reading this means that you have had
21 # knowledge of the CeCILL-B license and that you accept its terms.
22 # ------------------------------------------------------------------------
28 function EEDreadlink() {
30 (cd "$DIR" && echo "$(pwd -P)")
34 #EED 2120-08-25 This code is not working in MacOS so we use EEDreadlink()
35 #EED scriptDirName=$(dirname $(Ereadlink -f $0) )
36 scriptDirName=$(dirname $(Ereadlink $0) )/Linux
38 #########################################################################
39 ############ Local Functions #######################################
40 #########################################################################
43 source scripts/LocalFunctions.sh
45 configureFile="scripts/CreaTools-configure.sh"
48 # default configuration parameters
49 OperatingSystem=`getDistrib`
51 generationdir=$HOME/Creatis/creaTools
58 loginGroupName=`groups | awk '{print $1}'`
62 export ETC_BASHRC=`getbashrc`
66 echo "installscript [options] command"
67 echo "creatools configure/compile/install script"
70 echo "OPTIONS ARE USE FOR CONFIGURATION ONLY: THEY WILL BE IGNORED IF <COMMAND> IS NOT \"CONFIG\" OR \"ALL\""
75 echo " as a normal user:"
76 echo " config : set the configuration parameters only"
78 echo " need root password:"
79 echo " 3rd : Get, Compile, Install all 3rd party library "
80 echo " 3rd-base : Install basic tools (cmake, doxygen...)"
81 echo " 3rd-vtk : Get, Compile, Install vtk"
82 echo " 3rd-itk : Get, Compile, Install itk"
83 echo " 3rd-gdcm : Get, Compile, Install gdcm"
84 echo " 3rd-wx : Get, Compile, Install wx widget (for Mac Users)"
85 echo " 3rd-wt : Get, Compile, Install wt"
87 echo " as a normal user:"
88 echo " creatools : Get Compile and Install the CreaTools"
89 echo " creatools-get : Get the CreaTools"
90 echo " creatools-cmp : Compile the CreaTools"
91 echo " creatools-install : Install the CreaTools"
93 echo " creatools-generateBinTGZ : generation of CreaTools.tgz (binary version)"
95 echo " uninstall : uninstall the creatools"
97 echo " printconfig : print the configuration"
98 echo " help : print help"
99 echo " env : print some environnement variables"
101 echo " all : configure / compile / install"
107 echo " configure options: !!!!! IGNORED IF COMMAND IS NOT CONFIG OR ALL !!!!!!"
108 echo " -os <os> : operating system distribution (default $OperatingSystem)"
109 echo " -ncore <n> : number of core to use (default $corenumber)"
110 echo " -gdir <dir> : generation directory (default $generationdir)"
111 echo " -instprefix <dir> : creatools install prefix"
112 echo " -instprefix3 <dir> : 3rd party library install prefix"
113 echo " -html : get creatools from HTML"
114 echo " -git : get creatools from git (CREATIS user only)"
115 echo " -git-read-only : get creatools from git (anonymously, no write access)"
116 echo " -build : build type Release, RelWithDebug or Debug (default RelWithDebug)"
118 echo " experimental configure options (use at your own risk!!):"
119 echo " -gdcm2 : use GDCM2 "
120 echo " -doc : generate documentation"
121 echo " -itk4 : use ITK4"
126 ##################################################
128 while [ $# -ge 1 ] ; do
130 -os) OperatingSystem=$2; shift 2;;
131 -ncore) corenumber=$2; shift 2;;
132 -gdir) generationdir=$2; shift 2;;
133 -instprefix) installPrefix=$2; shift 2;;
134 -instprefix3) installPrefixThird=$2; shift 2;;
135 -doc) docgeneration=ON; shift 1;;
136 -html) sourcesFrom=HTML; shift 1;;
137 -git) sourcesFrom=GIT; shift 1;;
138 -git-read-only) sourcesFrom=GIT-READ-ONLY;
140 -gdcm2) gdcmVersion=GDCM2; shift 1;;
141 -itk4) ITKVersion=ITK4; shift 1;;
142 -build) buildType=$2; shift 2;;
147 if [ $# -le 0 ] ; then usage; fi
151 # check that command is valid
152 if [ `checkVal $command all config 3rd 3rd-base 3rd-vtk 3rd-itk 3rd-gdcm 3rd-wx 3rd-wt creatools creatools-get creatools-cmp creatools-install creatools-generateBinTGZ uninstall printconfig help env` == "false" ] ; then
153 echo "Unrecognized command: $command"
159 ############################## use existing configuration if command is not config or all
160 if [ `checkVal $command config all` == false ] ; then
161 if [ ! -f $configureFile ] ; then
162 echo "scripts/CreaTools-configure.sh does not exists"
163 echo "please run the scripts with command \"config\" or \"all\""
166 source $configureFile
167 if [ ! -f $installPrefixThird/share/creatools/creatools_third_party_library_config.sh ] ; then
169 echo "the curently used Third Party libraries are NOT in $installPrefixThird but ... in :"
170 grep "installPrefixThird=" $ETC_BASHRC
171 echo "VTK_DIR : " $VTK_DIR
172 echo "ITK_DIR : " $ITK_DIR
173 echo "GDCM_DIR : " $GDCM_DIR
174 echo "(Have a look at $ETC_BASHRC=, edit it or run again Install Third Party Libraries if you disagree)"
181 ##################################################################################
182 ############################ check configuration parameters
184 checkDistrib $OperatingSystem
186 # complete default install prefix
187 if [ -z "$installPrefix" ] ; then installPrefix=$generationdir/ci; fi
188 if [ -z "$installPrefixThird" ] ; then installPrefixThird=$generationdir/tpli; fi
191 if [ `checkVal $buildType Release Debug RelWithDebug` == "false" ] ; then
192 echo "Unsupported build type: $buildType"
193 echo "Please use one of: Release Debug RelWithDebug"
198 ##################################################################################
199 ############################ write configuration file
200 if [ `checkVal $command config all` == true ] ; then
201 echo "#!/bin/bash" > $configureFile
202 echo >> $configureFile
203 echo "#File generated by 'installscript'" >> $configureFile
204 echo "#DO NOT edit !" >> $configureFile
205 echo "#(except if you *do* know what you do)" >> $configureFile
206 echo >> $configureFile
207 echo "OperatingSystem=$OperatingSystem" >> $configureFile
208 echo "corenumber=$corenumber" >> $configureFile
209 echo "generationdir=$generationdir" >> $configureFile
210 echo "installPrefix=$installPrefix" >> $configureFile
211 echo "installPrefixThird=$installPrefixThird" >> $configureFile
212 echo "docgeneration=$docgeneration" >> $configureFile
213 echo "sourcesFrom=$sourcesFrom" >> $configureFile
214 echo "loginUserName=$loginUserName" >> $configureFile
215 echo "loginGroupName=$loginGroupName" >> $configureFile
216 echo "buildType=$buildType" >> $configureFile
217 echo "gdcmVersion=$gdcmVersion" >> $configureFile
218 echo "ITKVersion=$ITKVersion" >> $configureFile
219 echo "ETC_BASHRC=$ETC_BASHRC" >> $configureFile
224 ################################### print current configuration
228 ##################################################################################
229 ##################################################################################
230 ############ Process commands
231 ##################################################################################
232 ##################################################################################
235 ################################################################################## config printconfig
236 # config or printconfig : already done
237 if [ `checkVal $command config printconfig` == true ] ; then
241 ################################################################################## creatools
243 if [ `checkVal $command all creatools creatools-get` == true ] ; then
244 bigDisplay "DOWNLOAD CREATOOLS"
245 bash scripts/CreaTools-load.sh
248 ################################################################################## 3rd library
249 # install packaged dependencies as root
250 if [ `checkVal $command all 3rd 3rd-base` == true ] ; then
251 bigDisplay "INSTALL PACKAGES DEPENDENCIES"
252 source scripts/CreaTools-configure.sh
254 source ThirdParty-install-Base-Stuff.sh $OperatingSystem
256 bash scripts/ThirdParty-install.sh
260 if [ `checkVal $command all 3rd 3rd-vtk` == true ] ; then
261 bigDisplay "INSTALL VTK"
262 source scripts/ThirdParty-install-VTK.sh
267 if [ `checkVal $command all 3rd 3rd-gdcm` == true ] ; then
268 bigDisplay "INSTALL $gdcmVersion"
269 source scripts/ThirdParty-install-gdcm.sh
276 if [ `checkVal $command all 3rd 3rd-itk` == true ] ; then
277 bigDisplay "INSTALL $ITKVersion"
278 bash scripts/ThirdParty-install-ITK.sh
283 if [ `checkVal $command all 3rd 3rd-wt` == true ] ; then
284 bigDisplay "INSTALL WT"
285 source scripts/ThirdParty-install-WT.sh
289 # Setup the user .bashrc correctly
290 if [ `checkVal $command all 3rd 3rd-vtk 3rd-itk 3rd-gdcm 3rd-wx 3rd-wt ` == true ] ; then
291 bigDisplay "FINALIZE 3RD PARTY LIBRARY INSTALLATION"
292 bash scripts/ThirdParty-install-Finalize.sh
293 if [ `checkVal $command 3rd 3rd-vtk 3rd-itk 3rd-gdcm 3rd-wx ` == true ] ; then
294 bigDisplay "Third Party Install Done"
295 bigDisplay "Please copy paste the following command or open a new terminal: source ~/.bashrc"
299 ################################################################################## creatools
301 if [ `checkVal $command all creatools creatools-cmp` == true ] ; then
302 bigDisplay "COMPILE CREATOOLS"
303 echo "EED installscript compile creatools"
306 bash -x scripts/CreaTools-compile.sh
308 # To allow (*very* aware) user to patch code, later
309 if [ ! -e $generationdir/creatools_source ] ; then
310 echo "You probabely made a mistake : "
311 echo "Directory $loginUserName $generationdir/creatools_source not found"
312 echo "Make sure you know the mistake"
313 echo "Hit any key to continue"
314 echo "Fix the mistake!"
317 chown -R $loginUserName $generationdir/creatools_source
318 chgrp -R $loginGroupName $generationdir/creatools_source
323 if [ `checkVal $command all creatools creatools-install` == true ] ; then
324 bigDisplay "INSTALL CREATOOLS"
326 bash scripts/CreaTools-install.sh
332 echo "Open a new terminal to run creatools."
333 echo "(Close this window and continue....) "
336 ##EED read -p "Press [Enter] key to continue..."
339 #generate TGZ version of the bin (Creatools and ThirdParty)
340 if [ `checkVal $command creatools-generateBinTGZ` == true ] ; then
341 bash scripts/CreaTools-GenerateBinTGZ.sh
344 ################################################################################## uninstall
345 if [ `checkVal $command uninstall` == true ] ; then
346 bigDisplay "UNINSTALL CREATOOLS"
347 bash scripts/CreaTools-uninstall.sh
350 ################################################################################## help
351 if [ `checkVal $command help` == true ] ; then
355 ################################################################################## print env variables
356 if [ `checkVal $command env` == true ] ; then
357 if [ ! -f $installPrefixThird/share/creatools_third_party_library_config.sh ] ; then
360 echo "the curently used Third Party libraries are NOT in $installPrefixThird but in :"
361 grep "installPrefixThird=" $ETC_BASHRC
362 echo "VTK_DIR : " $VTK_DIR
363 echo "ITK_DIR : " $ITK_DIR
364 echo "GDCM_DIR : " $GDCM_DIR
366 echo "installPrefixThird ... " $installPrefixThird
369 if [ -f $installPrefixThird/share/creatools_third_party_library_config.sh ] ; then
370 echo "Third party config file : " $installPrefixThird/share/creatools_third_party_library_config.sh
372 cat $installPrefixThird/share/creatools_third_party_library_config.sh
378 if [ -f $installPrefix/share/creatools_base_library_config.sh ] ; then
379 echo "Creatools base library config file : " $installPrefix/share/creatools_base_library_config.sh
381 cat $installPrefix/share/creatools_base_library_config.sh
384 echo "installPrefix ... " $installPrefix
388 echo "VTK_DIR : " $VTK_DIR
389 echo "ITK_DIR : " $ITK_DIR
390 echo "GDCM_DIR : " $GDCM_DIR
392 echo "crea_DIR : " $crea_DIR
393 echo "BBTK_DIR : " $BBTK_DIR
394 echo "creaMaracasVisu_DIR : " $creaMaracasVisu_DIR
395 echo "creaEnvironment_DIR : " $creaEnvironment_DIR
396 echo "creaBruker_DIR : " $creaBruker_DIR
397 echo "creaImageIO_DIR : " $creaImageIO_DIR
398 echo "creaContours_DIR : " $creaContours_DIR
399 echo "creaRigidRegistration_DIR :" $creaRigidRegistration_DIR
400 echo "bbtkGEditor_DIR : " $bbtkGEditor_DIR
401 echo "creaTools_DIR : " $creaTools_DIR
402 echo "creaMiniTools_DIR : " $creaMiniTools_DIR
403 echo "Ido_DIR : " $Ido_DIR
404 echo "==================================="