1 # CMakeLists for Testing purpose
2 # Cxx file that need a file to run should be place aproprietly
4 SET(CXX_TEST_PATH ${EXECUTABLE_OUTPUT_PATH})
6 SET(GDCM_TESTS ${CXX_TEST_PATH}/gdcmTests)
8 # add test that does not require data:
9 # They usally return if no argument is given
16 TestDicomDirElement.cxx
22 # add tests that require data
24 SET(TEST_SOURCES ${TEST_SOURCES}
25 TestSerieHeader # uses gdcmData as a default root directory
26 TestReadWriteReadCompare.cxx # includes generated gdcmDataImages.h
27 PrintAllDocument.cxx # includes generated gdcmDataImages.h
28 TestAllReadCompareDicom.cxx # includes generated gdcmDataImages.h
29 TestAllEntryVerify.cxx # includes generated gdcmDataImages.h
31 TestCopyDicom.cxx # includes generated gdcmDataImages.h
32 TestCopyRescaleDicom.cxx # includes generated gdcmDataImages.h
33 TestDicomDir.cxx # require DICOMDIR
34 BuildUpDicomDir.cxx # writes a file named "NewDICOMDIR"
35 makeDicomDir.cxx # writes a file named "NewDICOMDIR"
38 # add test that require VTK:
40 # Include the VTK library
41 INCLUDE(${VTK_USE_FILE})
44 ${GDCM_SOURCE_DIR}/vtk/
46 SET(TEST_SOURCES ${TEST_SOURCES}
52 ENDIF (GDCM_DATA_ROOT)
58 ${GDCM_SOURCE_DIR}/src/
62 CREATE_TEST_SOURCELIST(Tests gdcmTests.cxx ${TEST_SOURCES})
63 ADD_EXECUTABLE(gdcmTests ${Tests})
65 TARGET_LINK_LIBRARIES(gdcmTests vtkgdcm vtkRendering)
67 TARGET_LINK_LIBRARIES(gdcmTests gdcm)
70 SET (TestsToRun ${Tests})
71 REMOVE (TestsToRun gdcmTests.cxx)
73 # Loop over files and create executables
74 FOREACH(file ${TEST_SOURCES})
75 GET_FILENAME_COMPONENT(name ${file} NAME_WE)
77 # ADD_TEST(${name} ${GDCM_TESTS} ${name}
78 # -D ${GDCM_DATA_ROOT}
79 # -T ${GDCM_BINARY_DIR}/Testing/Temporary
80 # -V Baseline/gdcm/${name}.png)
81 # ELSE (GDCM_DATA_ROOT)
82 ADD_TEST(${name} ${GDCM_TESTS} ${name})
83 # ENDIF (GDCM_DATA_ROOT)
84 ENDFOREACH(file ${TEST_SOURCES})
86 #-----------------------------------------------------------------------------
88 # We need to test the reading of all dicom images in the gdcmData directory
89 # First parse this directory and extract all images
91 IF(${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION} GREATER 1.9)
92 FILE(GLOB GDCM_DATA_IMAGES_GLOB
93 "${GDCM_DATA_ROOT}/*.acr"
94 "${GDCM_DATA_ROOT}/*.dcm"
95 "${GDCM_DATA_ROOT}/*.nema"
96 "${GDCM_DATA_ROOT}/*.ima"
98 FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB
99 "${GDCM_DATA_ROOT}/*FileSeq0.acr"
100 "${GDCM_DATA_ROOT}/*FileSeq0.dcm"
101 "${GDCM_DATA_ROOT}/*FileSeq0.nema"
102 "${GDCM_DATA_ROOT}/*FileSeq0.ima"
104 ELSE(${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION} GREATER 1.9)
105 # Since there is a bug in cmake 1.8.3, I'll have to do two separate globs
106 FILE(GLOB GDCM_DATA_IMAGES_GLOB_ACR
107 "${GDCM_DATA_ROOT}/*.acr"
109 FILE(GLOB GDCM_DATA_IMAGES_GLOB_DCM
110 "${GDCM_DATA_ROOT}/*.dcm"
112 FILE(GLOB GDCM_DATA_IMAGES_GLOB_NEMA
113 "${GDCM_DATA_ROOT}/*.nema"
115 FILE(GLOB GDCM_DATA_IMAGES_GLOB_IMA
116 "${GDCM_DATA_ROOT}/*.ima"
118 SET(GDCM_DATA_IMAGES_GLOB
119 ${GDCM_DATA_IMAGES_GLOB_DCM} ${GDCM_DATA_IMAGES_GLOB_ACR}
120 ${GDCM_DATA_IMAGES_GLOB_NEMA} ${GDCM_DATA_IMAGES_GLOB_IMA})
122 FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB_ACR
123 "${GDCM_DATA_ROOT}/*FileSeq0.acr"
125 FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB_DCM
126 "${GDCM_DATA_ROOT}/*FileSeq0.dcm"
128 FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB_NEMA
129 "${GDCM_DATA_ROOT}/*FileSeq0.nema"
131 FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB_IMA
132 "${GDCM_DATA_ROOT}/*FileSeq0.ima"
134 SET(GDCM_DATA_SEQ_IMAGES_GLOB
135 ${GDCM_DATA_SEQ_IMAGES_GLOB_DCM} ${GDCM_DATA_SEQ_IMAGES_GLOB_ACR}
136 ${GDCM_DATA_SEQ_IMAGES_GLOB_NEMA} ${GDCM_DATA_SEQ_IMAGES_GLOB_IMA})
137 ENDIF(${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION} GREATER 1.9)
139 # Black list of images known to break lots of readers (efilm, xmedcon ...):
141 # serial killer (also segfaults vtkgdcmViewer, but NOT PrintFile)
142 #"gdcm-JPEG-LossLessThoravision.dcm"
144 # Mathieu: temporarily remove as it kills my gnome session (but not kde)
145 # JPR: also breaks TestReadWriteReadCompare : Pixel differ (as expanded
147 #"KODAK-12-MONO1-Odd_Terminated_Sequence.dcm"
149 # Multiframe Papyrus format image
150 # Just to remember this format exist, and is gdcm::Header compliant
151 # (NOT gdcm::File ...)
152 # any contribution is welcome
153 "PET-cardio-Multiframe-Papyrus.dcm"
154 "D_CLUNIE_CT1_JLSN.dcm"
155 "D_CLUNIE_CT1_JLSL.dcm"
156 "D_CLUNIE_CT1_J2KR.dcm"
157 "D_CLUNIE_CT1_J2KI.dcm"
160 # Add a special test that requires dciodvfy from dicom3tools
161 INCLUDE(${GDCM_SOURCE_DIR}/FindDicom3Tools.cmake)
163 # This is a GLOB expression, change it into a list separated with a comma and \n
164 SET(GDCM_DATA_IMAGES)
165 FOREACH(filename ${GDCM_DATA_IMAGES_GLOB})
166 GET_FILENAME_COMPONENT(filename_temp ${filename} NAME)
168 ADD_TEST("Clunie-${filename_temp}" "${DCIODVFY_EXECUTABLE}" "${filename}")
169 ENDIF(DCIODVFY_FOUND)
170 STRING(REGEX MATCH ${filename_temp} bad_dicom ${BLACK_LIST})
172 SET(GDCM_DATA_IMAGES "${GDCM_DATA_IMAGES}\n\"${filename_temp}\",")
176 SET(GDCM_DATA_SEQ_IMAGES)
177 FOREACH(filename ${GDCM_DATA_SEQ_IMAGES_GLOB})
178 GET_FILENAME_COMPONENT(filename_temp ${filename} NAME)
179 STRING(REGEX MATCH ${filename_temp} bad_dicom ${BLACK_LIST})
181 STRING(REGEX REPLACE "(.*)FileSeq0(.*)" "\\1FileSeq%d\\2" filename_temp2 ${filename_temp})
183 SET(GDCM_DATA_SEQ_IMAGES "${GDCM_DATA_SEQ_IMAGES}\n\"${filename_temp2}\",")
187 # Populate GDCM_DATA_IMAGES:
188 FILE(WRITE "${GDCM_BINARY_DIR}/gdcmDataImages.h"
189 "const char * const gdcmDataImages[] = { ${GDCM_DATA_IMAGES}\n0 };\n"
192 # Populate GDCM_DATA_SEQ_IMAGES:
193 FILE(WRITE "${GDCM_BINARY_DIR}/gdcmDataSeqImages.h"
194 "const char * const gdcmDataSeqImages[] = { ${GDCM_DATA_SEQ_IMAGES}\n0 };\n"