1 # CMakeLists for Testing purpose
2 # Cxx file that need a file to run should be place aproprietly
4 SET(CXX_TEST_PATH ${EXECUTABLE_OUTPUT_PATH})
6 SET(GDCM_TESTS ${CXX_TEST_PATH}/gdcmTests)
8 # add test that does not require data:
9 # They usally return if no argument is given
19 # add tests that require data
21 SET(TEST_SOURCES ${TEST_SOURCES}
22 TestReadWriteReadCompare.cxx # includes generated gdcmDataImages.h
23 PrintAllDocument.cxx # includes generated gdcmDataImages.h
24 TestAllReadCompareDicom.cxx # includes generated gdcmDataImages.h
25 TestAllEntryVerify.cxx # includes generated gdcmDataImages.h
28 TestDicomDir.cxx # require DICOMDIR
29 BuildUpDicomDir.cxx # writes a file named "NewDICOMDIR"
30 makeDicomDir.cxx # writes a file named "NewDICOMDIR"
32 TestCopyRescaleDicom.cxx
34 # add test that require VTK:
36 # Include the VTK library
37 INCLUDE(${VTK_USE_FILE})
40 ${GDCM_SOURCE_DIR}/vtk/
42 SET(TEST_SOURCES ${TEST_SOURCES}
48 ENDIF (GDCM_DATA_ROOT)
54 ${GDCM_SOURCE_DIR}/src/
58 CREATE_TEST_SOURCELIST(Tests gdcmTests.cxx ${TEST_SOURCES})
59 ADD_EXECUTABLE(gdcmTests ${Tests})
61 TARGET_LINK_LIBRARIES(gdcmTests vtkgdcm vtkRendering)
63 TARGET_LINK_LIBRARIES(gdcmTests gdcm)
66 SET (TestsToRun ${Tests})
67 REMOVE (TestsToRun gdcmTests.cxx)
69 # Loop over files and create executables
70 FOREACH(file ${TEST_SOURCES})
71 GET_FILENAME_COMPONENT(name ${file} NAME_WE)
73 # ADD_TEST(${name} ${GDCM_TESTS} ${name}
74 # -D ${GDCM_DATA_ROOT}
75 # -T ${GDCM_BINARY_DIR}/Testing/Temporary
76 # -V Baseline/gdcm/${name}.png)
77 # ELSE (GDCM_DATA_ROOT)
78 ADD_TEST(${name} ${GDCM_TESTS} ${name})
79 # ENDIF (GDCM_DATA_ROOT)
80 ENDFOREACH(file ${TEST_SOURCES})
82 #-----------------------------------------------------------------------------
84 # We need to test the reading of all dicom images in the gdcmData directory
85 # First parse this directory and extract all images
87 IF(${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION} GREATER 1.9)
88 FILE(GLOB GDCM_DATA_IMAGES_GLOB
89 "${GDCM_DATA_ROOT}/*.acr"
90 "${GDCM_DATA_ROOT}/*.dcm"
91 "${GDCM_DATA_ROOT}/*.nema"
92 "${GDCM_DATA_ROOT}/*.ima"
94 FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB
95 "${GDCM_DATA_ROOT}/*FileSeq0.acr"
96 "${GDCM_DATA_ROOT}/*FileSeq0.dcm"
97 "${GDCM_DATA_ROOT}/*FileSeq0.nema"
98 "${GDCM_DATA_ROOT}/*FileSeq0.ima"
100 ELSE(${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION} GREATER 1.9)
101 # Since there is a bug in cmake 1.8.3, I'll have to do two separate globs
102 FILE(GLOB GDCM_DATA_IMAGES_GLOB_ACR
103 "${GDCM_DATA_ROOT}/*.acr"
105 FILE(GLOB GDCM_DATA_IMAGES_GLOB_DCM
106 "${GDCM_DATA_ROOT}/*.dcm"
108 FILE(GLOB GDCM_DATA_IMAGES_GLOB_NEMA
109 "${GDCM_DATA_ROOT}/*.nema"
111 FILE(GLOB GDCM_DATA_IMAGES_GLOB_IMA
112 "${GDCM_DATA_ROOT}/*.ima"
114 SET(GDCM_DATA_IMAGES_GLOB
115 ${GDCM_DATA_IMAGES_GLOB_DCM} ${GDCM_DATA_IMAGES_GLOB_ACR}
116 ${GDCM_DATA_IMAGES_GLOB_NEMA} ${GDCM_DATA_IMAGES_GLOB_IMA})
118 FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB_ACR
119 "${GDCM_DATA_ROOT}/*FileSeq0.acr"
121 FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB_DCM
122 "${GDCM_DATA_ROOT}/*FileSeq0.dcm"
124 FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB_NEMA
125 "${GDCM_DATA_ROOT}/*FileSeq0.nema"
127 FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB_IMA
128 "${GDCM_DATA_ROOT}/*FileSeq0.ima"
130 SET(GDCM_DATA_SEQ_IMAGES_GLOB
131 ${GDCM_DATA_SEQ_IMAGES_GLOB_DCM} ${GDCM_DATA_SEQ_IMAGES_GLOB_ACR}
132 ${GDCM_DATA_SEQ_IMAGES_GLOB_NEMA} ${GDCM_DATA_SEQ_IMAGES_GLOB_IMA})
133 ENDIF(${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION} GREATER 1.9)
135 # Black list of images known to break lots of readers (efilm, xmedcon ...):
137 # serial killer (also segfaults vtkgdcmViewer, but NOT PrintFile)
138 "gdcm-JPEG-LossLessThoravision.dcm"
140 # Mathieu: temporarily remove as it kills my gnome session (but not kde)
141 # JPR: also breaks TestReadWriteReadCompare : Pixel differ (as expanded
143 "KODAK-12-MONO1-Odd_Terminated_Sequence.dcm"
147 SET(BLACK_LIST ${BLACK_LIST}
148 "SIEMENS_GBS_III-16-ACR_NEMA_1.acr" # This image contains a wrong length
149 # Which led us to read pass the end of the file. This seg fault on MacOSX
153 # This is a GLOB expression, change it into a list separated with a comma and \n
154 SET(GDCM_DATA_IMAGES)
155 FOREACH(filename ${GDCM_DATA_IMAGES_GLOB})
156 GET_FILENAME_COMPONENT(filename_temp ${filename} NAME)
157 STRING(REGEX MATCH ${filename_temp} bad_dicom ${BLACK_LIST})
159 SET(GDCM_DATA_IMAGES "${GDCM_DATA_IMAGES}\n\"${filename_temp}\",")
163 SET(GDCM_DATA_SEQ_IMAGES)
164 FOREACH(filename ${GDCM_DATA_SEQ_IMAGES_GLOB})
165 GET_FILENAME_COMPONENT(filename_temp ${filename} NAME)
166 STRING(REGEX MATCH ${filename_temp} bad_dicom ${BLACK_LIST})
168 STRING(REGEX REPLACE "(.*)FileSeq0(.*)" "\\1FileSeq%d\\2" filename_temp2 ${filename_temp})
170 SET(GDCM_DATA_SEQ_IMAGES "${GDCM_DATA_SEQ_IMAGES}\n\"${filename_temp2}\",")
174 # Populate GDCM_DATA_IMAGES:
175 FILE(WRITE "${GDCM_BINARY_DIR}/gdcmDataImages.h"
176 "const char * const gdcmDataImages[] = { ${GDCM_DATA_IMAGES}\n0 };\n"
179 # Populate GDCM_DATA_SEQ_IMAGES:
180 FILE(WRITE "${GDCM_BINARY_DIR}/gdcmDataSeqImages.h"
181 "const char * const gdcmDataSeqImages[] = { ${GDCM_DATA_SEQ_IMAGES}\n0 };\n"