1 # CMakeLists for Testing purpose
2 # Cxx file that need a file to run should be place aproprietly
4 SET(CXX_TEST_PATH ${EXECUTABLE_OUTPUT_PATH})
6 SET(GDCM_TESTS ${CXX_TEST_PATH}/gdcmTests)
8 # add test that does not require data:
9 # They usally return if no argument is given
19 TestDicomDirElement.cxx
23 # add tests that require data
25 SET(TEST_SOURCES ${TEST_SOURCES}
27 TestPrintAllDocument.cxx # includes generated gdcmDataImages.h
28 TestAllEntryVerify.cxx # includes generated gdcmDataImages.h
29 TestAllReadCompareDicom.cxx # includes generated gdcmDataImages.h
30 TestReadWriteReadCompare.cxx # includes generated gdcmDataImages.h
31 #TestCopyDicom.cxx # includes generated gdcmDataImages.h
32 TestCopyRescaleDicom.cxx # includes generated gdcmDataImages.h
35 TestDicomDir.cxx # require DICOMDIR
36 TestBuildUpDicomDir.cxx # writes a file named "NewDICOMDIR"
37 TestMakeDicomDir.cxx # writes a file named "NewDICOMDIR"
38 TestSerieHelper.cxx # uses gdcmData as a default root directory
40 # add test that require VTK:
42 # Include the VTK library
43 INCLUDE(${VTK_USE_FILE})
46 ${GDCM_SOURCE_DIR}/vtk/
48 SET(TEST_SOURCES ${TEST_SOURCES}
55 ENDIF (GDCM_DATA_ROOT)
61 ${GDCM_SOURCE_DIR}/src/
65 CREATE_TEST_SOURCELIST(Tests gdcmTests.cxx ${TEST_SOURCES})
66 ADD_EXECUTABLE(gdcmTests ${Tests})
68 TARGET_LINK_LIBRARIES(gdcmTests vtkgdcm vtkRendering)
70 TARGET_LINK_LIBRARIES(gdcmTests gdcm)
73 SET (TestsToRun ${Tests})
74 REMOVE (TestsToRun gdcmTests.cxx)
76 # Loop over files and create executables
77 FOREACH(file ${TEST_SOURCES})
78 GET_FILENAME_COMPONENT(name ${file} NAME_WE)
79 ADD_TEST(${name} ${GDCM_TESTS} ${name})
80 ENDFOREACH(file ${TEST_SOURCES})
82 #-----------------------------------------------------------------------------
84 # We need to test the reading of all dicom images in the gdcmData directory
85 # First parse this directory and extract all images
87 IF(${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION} GREATER 1.9)
88 FILE(GLOB GDCM_DATA_IMAGES_GLOB
89 "${GDCM_DATA_ROOT}/*.acr"
90 "${GDCM_DATA_ROOT}/*.dcm"
91 "${GDCM_DATA_ROOT}/*.nema"
92 "${GDCM_DATA_ROOT}/*.ima"
94 FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB
95 "${GDCM_DATA_ROOT}/*FileSeq0.acr"
96 "${GDCM_DATA_ROOT}/*FileSeq0.dcm"
97 "${GDCM_DATA_ROOT}/*FileSeq0.nema"
98 "${GDCM_DATA_ROOT}/*FileSeq0.ima"
100 ELSE(${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION} GREATER 1.9)
101 # Since there is a bug in cmake 1.8.3, I'll have to do two separate globs
102 FILE(GLOB GDCM_DATA_IMAGES_GLOB_ACR
103 "${GDCM_DATA_ROOT}/*.acr"
105 FILE(GLOB GDCM_DATA_IMAGES_GLOB_DCM
106 "${GDCM_DATA_ROOT}/*.dcm"
108 FILE(GLOB GDCM_DATA_IMAGES_GLOB_NEMA
109 "${GDCM_DATA_ROOT}/*.nema"
111 FILE(GLOB GDCM_DATA_IMAGES_GLOB_IMA
112 "${GDCM_DATA_ROOT}/*.ima"
114 SET(GDCM_DATA_IMAGES_GLOB
115 ${GDCM_DATA_IMAGES_GLOB_DCM} ${GDCM_DATA_IMAGES_GLOB_ACR}
116 ${GDCM_DATA_IMAGES_GLOB_NEMA} ${GDCM_DATA_IMAGES_GLOB_IMA})
118 FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB_ACR
119 "${GDCM_DATA_ROOT}/*FileSeq0.acr"
121 FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB_DCM
122 "${GDCM_DATA_ROOT}/*FileSeq0.dcm"
124 FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB_NEMA
125 "${GDCM_DATA_ROOT}/*FileSeq0.nema"
127 FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB_IMA
128 "${GDCM_DATA_ROOT}/*FileSeq0.ima"
130 SET(GDCM_DATA_SEQ_IMAGES_GLOB
131 ${GDCM_DATA_SEQ_IMAGES_GLOB_DCM} ${GDCM_DATA_SEQ_IMAGES_GLOB_ACR}
132 ${GDCM_DATA_SEQ_IMAGES_GLOB_NEMA} ${GDCM_DATA_SEQ_IMAGES_GLOB_IMA})
133 ENDIF(${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION} GREATER 1.9)
135 # Black list of images known to break lots of readers (efilm, xmedcon ...):
138 # Multiframe Papyrus format image
139 # Just to remember this format exists, and is gdcm::File compliant
140 # (NOT gdcm::FileHelper ...)
141 # any contribution is welcome
142 "PET-cardio-Multiframe-Papyrus.dcm"
143 # From David Clunie's Compresion Dataset
144 "D_CLUNIE_CT1_JLSN.dcm"
145 "D_CLUNIE_CT1_JLSL.dcm"
146 "D_CLUNIE_CT1_J2KR.dcm"
147 "D_CLUNIE_CT1_J2KI.dcm"
150 # Add a special test that requires dciodvfy from dicom3tools
151 INCLUDE(${GDCM_SOURCE_DIR}/CMake/FindDicom3Tools.cmake)
153 # This is a GLOB expression, change it into a list separated with a comma and \n
154 SET(GDCM_DATA_IMAGES)
155 FOREACH(filename ${GDCM_DATA_IMAGES_GLOB})
156 GET_FILENAME_COMPONENT(filename_temp ${filename} NAME)
158 ADD_TEST("Clunie-${filename_temp}" "${DCIODVFY_EXECUTABLE}" "${filename}")
159 ENDIF(DCIODVFY_FOUND)
160 STRING(REGEX MATCH ${filename_temp} bad_dicom ${BLACK_LIST})
162 SET(GDCM_DATA_IMAGES "${GDCM_DATA_IMAGES}\n\"${filename_temp}\",")
166 SET(GDCM_DATA_SEQ_IMAGES)
167 FOREACH(filename ${GDCM_DATA_SEQ_IMAGES_GLOB})
168 GET_FILENAME_COMPONENT(filename_temp ${filename} NAME)
169 STRING(REGEX MATCH ${filename_temp} bad_dicom ${BLACK_LIST})
171 STRING(REGEX REPLACE "(.*)FileSeq0(.*)" "\\1FileSeq%d\\2" filename_temp2 ${filename_temp})
173 SET(GDCM_DATA_SEQ_IMAGES "${GDCM_DATA_SEQ_IMAGES}\n\"${filename_temp2}\",")
177 # Populate GDCM_DATA_IMAGES:
178 FILE(WRITE "${GDCM_BINARY_DIR}/gdcmDataImages.h"
179 "const char * const gdcmDataImages[] = { ${GDCM_DATA_IMAGES}\n0 };\n"
182 # Populate GDCM_DATA_SEQ_IMAGES:
183 FILE(WRITE "${GDCM_BINARY_DIR}/gdcmDataSeqImages.h"
184 "const char * const gdcmDataSeqImages[] = { ${GDCM_DATA_SEQ_IMAGES}\n0 };\n"