1 # CMakeLists for Testing purpose
2 # Cxx file that need a file to run should be place aproprietly
4 SET(CXX_TEST_PATH ${EXECUTABLE_OUTPUT_PATH})
6 SET(GDCM_TESTS ${CXX_TEST_PATH}/gdcmTests)
8 # add test that does not require data:
9 # They usally return if no argument is given
19 TestDicomDirElement.cxx
23 # add tests that require data
25 SET(TEST_SOURCES ${TEST_SOURCES}
28 TestPrintAllDocument.cxx # includes generated gdcmDataImages.h
29 TestAllEntryVerify.cxx # includes generated gdcmDataImages.h
30 TestAllReadCompareDicom.cxx # includes generated gdcmDataImages.h
31 TestReadWriteReadCompare.cxx # includes generated gdcmDataImages.h
32 #TestCopyDicom.cxx # includes generated gdcmDataImages.h
33 TestCopyRescaleDicom.cxx # includes generated gdcmDataImages.h
37 TestDicomDir.cxx # require DICOMDIR
38 TestBuildUpDicomDir.cxx # writes a file named "NewDICOMDIR"
39 TestMakeDicomDir.cxx # writes a file named "NewDICOMDIR"
40 TestSerieHelper.cxx # uses gdcmData as a default root directory
42 # add test that require VTK:
44 # Include the VTK library
45 INCLUDE(${VTK_USE_FILE})
48 ${GDCM_SOURCE_DIR}/vtk/
50 SET(TEST_SOURCES ${TEST_SOURCES}
57 ENDIF (GDCM_DATA_ROOT)
63 ${GDCM_SOURCE_DIR}/src/
67 CREATE_TEST_SOURCELIST(Tests gdcmTests.cxx ${TEST_SOURCES})
68 ADD_EXECUTABLE(gdcmTests ${Tests})
70 TARGET_LINK_LIBRARIES(gdcmTests vtkgdcm vtkRendering)
72 TARGET_LINK_LIBRARIES(gdcmTests gdcm)
75 SET (TestsToRun ${Tests})
76 REMOVE (TestsToRun gdcmTests.cxx)
78 # Loop over files and create executables
79 FOREACH(file ${TEST_SOURCES})
80 GET_FILENAME_COMPONENT(name ${file} NAME_WE)
81 ADD_TEST(${name} ${GDCM_TESTS} ${name})
82 ENDFOREACH(file ${TEST_SOURCES})
84 #-----------------------------------------------------------------------------
86 # We need to test the reading of all dicom images in the gdcmData directory
87 # First parse this directory and extract all images
89 IF(${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION} GREATER 1.9)
90 FILE(GLOB GDCM_DATA_IMAGES_GLOB
91 "${GDCM_DATA_ROOT}/*.acr"
92 "${GDCM_DATA_ROOT}/*.dcm"
93 "${GDCM_DATA_ROOT}/*.nema"
94 "${GDCM_DATA_ROOT}/*.ima"
96 FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB
97 "${GDCM_DATA_ROOT}/*FileSeq0.acr"
98 "${GDCM_DATA_ROOT}/*FileSeq0.dcm"
99 "${GDCM_DATA_ROOT}/*FileSeq0.nema"
100 "${GDCM_DATA_ROOT}/*FileSeq0.ima"
102 ELSE(${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION} GREATER 1.9)
103 # Since there is a bug in cmake 1.8.3, I'll have to do two separate globs
104 FILE(GLOB GDCM_DATA_IMAGES_GLOB_ACR
105 "${GDCM_DATA_ROOT}/*.acr"
107 FILE(GLOB GDCM_DATA_IMAGES_GLOB_DCM
108 "${GDCM_DATA_ROOT}/*.dcm"
110 FILE(GLOB GDCM_DATA_IMAGES_GLOB_NEMA
111 "${GDCM_DATA_ROOT}/*.nema"
113 FILE(GLOB GDCM_DATA_IMAGES_GLOB_IMA
114 "${GDCM_DATA_ROOT}/*.ima"
116 SET(GDCM_DATA_IMAGES_GLOB
117 ${GDCM_DATA_IMAGES_GLOB_DCM} ${GDCM_DATA_IMAGES_GLOB_ACR}
118 ${GDCM_DATA_IMAGES_GLOB_NEMA} ${GDCM_DATA_IMAGES_GLOB_IMA})
120 FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB_ACR
121 "${GDCM_DATA_ROOT}/*FileSeq0.acr"
123 FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB_DCM
124 "${GDCM_DATA_ROOT}/*FileSeq0.dcm"
126 FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB_NEMA
127 "${GDCM_DATA_ROOT}/*FileSeq0.nema"
129 FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB_IMA
130 "${GDCM_DATA_ROOT}/*FileSeq0.ima"
132 SET(GDCM_DATA_SEQ_IMAGES_GLOB
133 ${GDCM_DATA_SEQ_IMAGES_GLOB_DCM} ${GDCM_DATA_SEQ_IMAGES_GLOB_ACR}
134 ${GDCM_DATA_SEQ_IMAGES_GLOB_NEMA} ${GDCM_DATA_SEQ_IMAGES_GLOB_IMA})
135 ENDIF(${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION} GREATER 1.9)
137 # Black list of images known to break lots of readers (efilm, xmedcon ...):
140 # Multiframe Papyrus format image
141 # Just to remember this format exists, and is gdcm::File compliant
142 # (NOT gdcm::FileHelper ...)
143 # any contribution is welcome
144 "PET-cardio-Multiframe-Papyrus.dcm"
145 # From David Clunie's Compresion Dataset
146 "D_CLUNIE_CT1_JLSN.dcm"
147 "D_CLUNIE_CT1_JLSL.dcm"
148 "D_CLUNIE_CT1_J2KR.dcm"
149 "D_CLUNIE_CT1_J2KI.dcm"
152 # Add a special test that requires dciodvfy from dicom3tools
153 INCLUDE(${GDCM_SOURCE_DIR}/CMake/FindDicom3Tools.cmake)
155 # This is a GLOB expression, change it into a list separated with a comma and \n
156 SET(GDCM_DATA_IMAGES)
157 FOREACH(filename ${GDCM_DATA_IMAGES_GLOB})
158 GET_FILENAME_COMPONENT(filename_temp ${filename} NAME)
160 ADD_TEST("Clunie-${filename_temp}" "${DCIODVFY_EXECUTABLE}" "${filename}")
161 ENDIF(DCIODVFY_FOUND)
162 STRING(REGEX MATCH ${filename_temp} bad_dicom ${BLACK_LIST})
164 SET(GDCM_DATA_IMAGES "${GDCM_DATA_IMAGES}\n\"${filename_temp}\",")
168 SET(GDCM_DATA_SEQ_IMAGES)
169 FOREACH(filename ${GDCM_DATA_SEQ_IMAGES_GLOB})
170 GET_FILENAME_COMPONENT(filename_temp ${filename} NAME)
171 STRING(REGEX MATCH ${filename_temp} bad_dicom ${BLACK_LIST})
173 STRING(REGEX REPLACE "(.*)FileSeq0(.*)" "\\1FileSeq%d\\2" filename_temp2 ${filename_temp})
175 SET(GDCM_DATA_SEQ_IMAGES "${GDCM_DATA_SEQ_IMAGES}\n\"${filename_temp2}\",")
179 # Populate GDCM_DATA_IMAGES:
180 FILE(WRITE "${GDCM_BINARY_DIR}/gdcmDataImages.h"
181 "const char * const gdcmDataImages[] = { ${GDCM_DATA_IMAGES}\n0 };\n"
184 # Populate GDCM_DATA_SEQ_IMAGES:
185 FILE(WRITE "${GDCM_BINARY_DIR}/gdcmDataSeqImages.h"
186 "const char * const gdcmDataSeqImages[] = { ${GDCM_DATA_SEQ_IMAGES}\n0 };\n"