1 # CMakeLists for Testing purpose
2 # Cxx file that need a file to run should be place aproprietly
4 SET(CXX_TEST_PATH ${EXECUTABLE_OUTPUT_PATH})
6 SET(GDCM_TESTS ${CXX_TEST_PATH}/gdcmTests)
8 # add test that does not require data:
9 # They usally return if no argument is given
20 TestDicomDirElement.cxx
24 # add tests that require data
26 SET(TEST_SOURCES ${TEST_SOURCES}
29 TestPrintAllDocument.cxx # includes generated gdcmDataImages.h
30 #TestAllEntryVerify.cxx # includes generated gdcmDataImages.h
31 TestAllReadCompareDicom.cxx # includes generated gdcmDataImages.h
32 TestReadWriteReadCompare.cxx # includes generated gdcmDataImages.h
33 #TestCopyDicom.cxx # includes generated gdcmDataImages.h
34 # TestCopyRescaleDicom.cxx # includes generated gdcmDataImages.h
38 TestDicomDir.cxx # require DICOMDIR
39 TestBuildUpDicomDir.cxx # writes a file named "NewDICOMDIR"
40 TestMakeDicomDir.cxx # writes a file named "NewDICOMDIR"
41 TestSerieHelper.cxx # uses gdcmData as a default root directory
43 # add test that require VTK:
45 IF("${VTK_MAJOR_VERSION}" LESS 4)
46 MESSAGE(FATAL_ERROR "This VTK version is not supported, you are on your own !")
47 ELSE("${VTK_MAJOR_VERSION}" LESS 4)
48 IF("${VTK_MAJOR_VERSION}" EQUAL 4 AND "${VTK_MINOR_VERSION}" EQUAL 2)
49 MESSAGE(FATAL_ERROR "This VTK version is not supported, you are on your own !"
50 "Although gdcm should compile fine. You just need to turn BUILD_TESTING:=OFF")
51 ENDIF("${VTK_MAJOR_VERSION}" EQUAL 4 AND "${VTK_MINOR_VERSION}" EQUAL 2)
52 IF("${VTK_MAJOR_VERSION}" EQUAL 4 AND "${VTK_MINOR_VERSION}" EQUAL 4 AND "${VTK_BUILD_VERSION}" LESS 3)
53 MESSAGE(FATAL_ERROR "This VTK version is not supported, you are on your own !"
54 "Although gdcm should compile fine. You just need to turn BUILD_TESTING:=OFF")
55 ENDIF("${VTK_MAJOR_VERSION}" EQUAL 4 AND "${VTK_MINOR_VERSION}" EQUAL 4 AND "${VTK_BUILD_VERSION}" LESS 3)
56 # Include the VTK library since we know this is going to work
57 INCLUDE(${VTK_USE_FILE})
60 ${GDCM_SOURCE_DIR}/vtk/
62 SET(TEST_SOURCES ${TEST_SOURCES}
68 ENDIF("${VTK_MAJOR_VERSION}" LESS 4)
70 ENDIF (GDCM_DATA_ROOT)
76 ${GDCM_SOURCE_DIR}/src/
80 CREATE_TEST_SOURCELIST(Tests gdcmTests.cxx ${TEST_SOURCES})
81 ADD_EXECUTABLE(gdcmTests ${Tests})
83 TARGET_LINK_LIBRARIES(gdcmTests vtkgdcm vtkRendering)
85 TARGET_LINK_LIBRARIES(gdcmTests gdcm)
88 SET (TestsToRun ${Tests})
89 REMOVE (TestsToRun gdcmTests.cxx)
91 # Loop over files and create executables
92 FOREACH(file ${TEST_SOURCES})
93 GET_FILENAME_COMPONENT(name ${file} NAME_WE)
94 ADD_TEST(${name} ${GDCM_TESTS} ${name})
95 ENDFOREACH(file ${TEST_SOURCES})
97 #-----------------------------------------------------------------------------
99 # We need to test the reading of all dicom images in the gdcmData directory
100 # First parse this directory and extract all images
102 IF(${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION} GREATER 1.9)
103 FILE(GLOB GDCM_DATA_IMAGES_GLOB
104 "${GDCM_DATA_ROOT}/*.acr"
105 "${GDCM_DATA_ROOT}/*.dcm"
106 "${GDCM_DATA_ROOT}/*.nema"
107 "${GDCM_DATA_ROOT}/*.ima"
109 FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB
110 "${GDCM_DATA_ROOT}/*FileSeq0.acr"
111 "${GDCM_DATA_ROOT}/*FileSeq0.dcm"
112 "${GDCM_DATA_ROOT}/*FileSeq0.nema"
113 "${GDCM_DATA_ROOT}/*FileSeq0.ima"
115 ELSE(${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION} GREATER 1.9)
116 # Since there is a bug in cmake 1.8.3, I'll have to do two separate globs
117 FILE(GLOB GDCM_DATA_IMAGES_GLOB_ACR
118 "${GDCM_DATA_ROOT}/*.acr"
120 FILE(GLOB GDCM_DATA_IMAGES_GLOB_DCM
121 "${GDCM_DATA_ROOT}/*.dcm"
123 FILE(GLOB GDCM_DATA_IMAGES_GLOB_NEMA
124 "${GDCM_DATA_ROOT}/*.nema"
126 FILE(GLOB GDCM_DATA_IMAGES_GLOB_IMA
127 "${GDCM_DATA_ROOT}/*.ima"
129 SET(GDCM_DATA_IMAGES_GLOB
130 ${GDCM_DATA_IMAGES_GLOB_DCM} ${GDCM_DATA_IMAGES_GLOB_ACR}
131 ${GDCM_DATA_IMAGES_GLOB_NEMA} ${GDCM_DATA_IMAGES_GLOB_IMA})
133 FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB_ACR
134 "${GDCM_DATA_ROOT}/*FileSeq0.acr"
136 FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB_DCM
137 "${GDCM_DATA_ROOT}/*FileSeq0.dcm"
139 FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB_NEMA
140 "${GDCM_DATA_ROOT}/*FileSeq0.nema"
142 FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB_IMA
143 "${GDCM_DATA_ROOT}/*FileSeq0.ima"
145 SET(GDCM_DATA_SEQ_IMAGES_GLOB
146 ${GDCM_DATA_SEQ_IMAGES_GLOB_DCM} ${GDCM_DATA_SEQ_IMAGES_GLOB_ACR}
147 ${GDCM_DATA_SEQ_IMAGES_GLOB_NEMA} ${GDCM_DATA_SEQ_IMAGES_GLOB_IMA})
148 ENDIF(${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION} GREATER 1.9)
150 # Black list of images known to break lots of readers (efilm, xmedcon ...):
153 # Multiframe Papyrus format image
154 # Just to remember this format exists, and is gdcm::File compliant
155 # (NOT gdcm::FileHelper ...)
156 # any contribution is welcome
157 "PET-cardio-Multiframe-Papyrus.dcm"
158 # From David Clunie's Compresion Dataset
159 "D_CLUNIE_CT1_JLSN.dcm"
160 "D_CLUNIE_CT1_JLSL.dcm"
161 #Not a Dicom Image, but a RT Object
162 "RS2.16.124.113534.2.3.5.0.120040728.21342.353.12747_anonimized.dcm"
164 "ETIAM_video_002.dcm"
165 #Something stupid occured in the code for LibIDO images.
166 #I Black list them for a while. JP
167 "gdcm-ACR-LibIDO.acr"
168 "LIBIDO-24-ACR_NEMA-Rectangle.dcm"
169 #16 Bits per pixel images with LUT 16 Bits.
170 #I wait to be 100% sure before releasing them. JP
175 # Add a special test that requires dciodvfy from dicom3tools
176 INCLUDE(${GDCM_SOURCE_DIR}/CMake/FindDicom3Tools.cmake)
178 # This is a GLOB expression, change it into a list separated with a comma and \n
179 SET(GDCM_DATA_IMAGES)
180 FOREACH(filename ${GDCM_DATA_IMAGES_GLOB})
181 GET_FILENAME_COMPONENT(filename_temp ${filename} NAME)
183 ADD_TEST("DCIODVFY-INPUT-${filename_temp}" "${DCIODVFY_EXECUTABLE}" "${filename}")
184 ADD_TEST("DCIODVFY-OUTPUT-${filename_temp}" "${DCIODVFY_EXECUTABLE}" "${GDCM_DATA_ROOT}/BaselineDicom/${filename_temp}")
185 ENDIF(DCIODVFY_FOUND)
186 STRING(REGEX MATCH ${filename_temp} bad_dicom ${BLACK_LIST})
188 SET(GDCM_DATA_IMAGES "${GDCM_DATA_IMAGES}\n\"${filename_temp}\",")
192 SET(GDCM_DATA_SEQ_IMAGES)
193 FOREACH(filename ${GDCM_DATA_SEQ_IMAGES_GLOB})
194 GET_FILENAME_COMPONENT(filename_temp ${filename} NAME)
195 STRING(REGEX MATCH ${filename_temp} bad_dicom ${BLACK_LIST})
197 STRING(REGEX REPLACE "(.*)FileSeq0(.*)" "\\1FileSeq%d\\2" filename_temp2 ${filename_temp})
199 SET(GDCM_DATA_SEQ_IMAGES "${GDCM_DATA_SEQ_IMAGES}\n\"${filename_temp2}\",")
203 # Populate GDCM_DATA_IMAGES:
204 FILE(WRITE "${GDCM_BINARY_DIR}/gdcmDataImages.h"
205 "const char * const gdcmDataImages[] = { ${GDCM_DATA_IMAGES}\n0 };\n"
208 # Populate GDCM_DATA_SEQ_IMAGES:
209 FILE(WRITE "${GDCM_BINARY_DIR}/gdcmDataSeqImages.h"
210 "const char * const gdcmDataSeqImages[] = { ${GDCM_DATA_SEQ_IMAGES}\n0 };\n"