1 # CMakeLists for Testing purpose
2 # Cxx file that need a file to run should be place aproprietly
4 SET(CXX_TEST_PATH ${EXECUTABLE_OUTPUT_PATH})
6 SET(GDCM_TESTS ${CXX_TEST_PATH}/gdcmTests)
8 # add test that does not require data:
9 # They usally return if no argument is given
16 TestDicomDirElement.cxx
22 # add tests that require data
24 SET(TEST_SOURCES ${TEST_SOURCES}
26 TestReadWriteReadCompare.cxx # includes generated gdcmDataImages.h
27 TestPrintAllDocument.cxx # includes generated gdcmDataImages.h
28 TestAllReadCompareDicom.cxx # includes generated gdcmDataImages.h
29 TestAllEntryVerify.cxx # includes generated gdcmDataImages.h
31 TestCopyDicom.cxx # includes generated gdcmDataImages.h
32 TestCopyRescaleDicom.cxx # includes generated gdcmDataImages.h
33 TestDicomDir.cxx # require DICOMDIR
34 TestBuildUpDicomDir.cxx # writes a file named "NewDICOMDIR"
35 TestMakeDicomDir.cxx # writes a file named "NewDICOMDIR"
37 TestSerieHelper.cxx # uses gdcmData as a default root directory
39 # add test that require VTK:
41 # Include the VTK library
42 INCLUDE(${VTK_USE_FILE})
45 ${GDCM_SOURCE_DIR}/vtk/
47 SET(TEST_SOURCES ${TEST_SOURCES}
53 ENDIF (GDCM_DATA_ROOT)
59 ${GDCM_SOURCE_DIR}/src/
63 CREATE_TEST_SOURCELIST(Tests gdcmTests.cxx ${TEST_SOURCES})
64 ADD_EXECUTABLE(gdcmTests ${Tests})
66 TARGET_LINK_LIBRARIES(gdcmTests vtkgdcm vtkRendering)
68 TARGET_LINK_LIBRARIES(gdcmTests gdcm)
71 SET (TestsToRun ${Tests})
72 REMOVE (TestsToRun gdcmTests.cxx)
74 # Loop over files and create executables
75 FOREACH(file ${TEST_SOURCES})
76 GET_FILENAME_COMPONENT(name ${file} NAME_WE)
78 # ADD_TEST(${name} ${GDCM_TESTS} ${name}
79 # -D ${GDCM_DATA_ROOT}
80 # -T ${GDCM_BINARY_DIR}/Testing/Temporary
81 # -V Baseline/gdcm/${name}.png)
82 # ELSE (GDCM_DATA_ROOT)
83 ADD_TEST(${name} ${GDCM_TESTS} ${name})
84 # ENDIF (GDCM_DATA_ROOT)
85 ENDFOREACH(file ${TEST_SOURCES})
87 #-----------------------------------------------------------------------------
89 # We need to test the reading of all dicom images in the gdcmData directory
90 # First parse this directory and extract all images
92 IF(${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION} GREATER 1.9)
93 FILE(GLOB GDCM_DATA_IMAGES_GLOB
94 "${GDCM_DATA_ROOT}/*.acr"
95 "${GDCM_DATA_ROOT}/*.dcm"
96 "${GDCM_DATA_ROOT}/*.nema"
97 "${GDCM_DATA_ROOT}/*.ima"
99 FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB
100 "${GDCM_DATA_ROOT}/*FileSeq0.acr"
101 "${GDCM_DATA_ROOT}/*FileSeq0.dcm"
102 "${GDCM_DATA_ROOT}/*FileSeq0.nema"
103 "${GDCM_DATA_ROOT}/*FileSeq0.ima"
105 ELSE(${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION} GREATER 1.9)
106 # Since there is a bug in cmake 1.8.3, I'll have to do two separate globs
107 FILE(GLOB GDCM_DATA_IMAGES_GLOB_ACR
108 "${GDCM_DATA_ROOT}/*.acr"
110 FILE(GLOB GDCM_DATA_IMAGES_GLOB_DCM
111 "${GDCM_DATA_ROOT}/*.dcm"
113 FILE(GLOB GDCM_DATA_IMAGES_GLOB_NEMA
114 "${GDCM_DATA_ROOT}/*.nema"
116 FILE(GLOB GDCM_DATA_IMAGES_GLOB_IMA
117 "${GDCM_DATA_ROOT}/*.ima"
119 SET(GDCM_DATA_IMAGES_GLOB
120 ${GDCM_DATA_IMAGES_GLOB_DCM} ${GDCM_DATA_IMAGES_GLOB_ACR}
121 ${GDCM_DATA_IMAGES_GLOB_NEMA} ${GDCM_DATA_IMAGES_GLOB_IMA})
123 FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB_ACR
124 "${GDCM_DATA_ROOT}/*FileSeq0.acr"
126 FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB_DCM
127 "${GDCM_DATA_ROOT}/*FileSeq0.dcm"
129 FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB_NEMA
130 "${GDCM_DATA_ROOT}/*FileSeq0.nema"
132 FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB_IMA
133 "${GDCM_DATA_ROOT}/*FileSeq0.ima"
135 SET(GDCM_DATA_SEQ_IMAGES_GLOB
136 ${GDCM_DATA_SEQ_IMAGES_GLOB_DCM} ${GDCM_DATA_SEQ_IMAGES_GLOB_ACR}
137 ${GDCM_DATA_SEQ_IMAGES_GLOB_NEMA} ${GDCM_DATA_SEQ_IMAGES_GLOB_IMA})
138 ENDIF(${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION} GREATER 1.9)
140 # Black list of images known to break lots of readers (efilm, xmedcon ...):
143 # Multiframe Papyrus format image
144 # Just to remember this format exists, and is gdcm::File compliant
145 # (NOT gdcm::FileHelper ...)
146 # any contribution is welcome
147 "PET-cardio-Multiframe-Papyrus.dcm"
148 # From David Clunie's Compresion Dataset
149 "D_CLUNIE_CT1_JLSN.dcm"
150 "D_CLUNIE_CT1_JLSL.dcm"
151 "D_CLUNIE_CT1_J2KR.dcm"
152 "D_CLUNIE_CT1_J2KI.dcm"
155 # Add a special test that requires dciodvfy from dicom3tools
156 INCLUDE(${GDCM_SOURCE_DIR}/CMake/FindDicom3Tools.cmake)
158 # This is a GLOB expression, change it into a list separated with a comma and \n
159 SET(GDCM_DATA_IMAGES)
160 FOREACH(filename ${GDCM_DATA_IMAGES_GLOB})
161 GET_FILENAME_COMPONENT(filename_temp ${filename} NAME)
163 ADD_TEST("Clunie-${filename_temp}" "${DCIODVFY_EXECUTABLE}" "${filename}")
164 ENDIF(DCIODVFY_FOUND)
165 STRING(REGEX MATCH ${filename_temp} bad_dicom ${BLACK_LIST})
167 SET(GDCM_DATA_IMAGES "${GDCM_DATA_IMAGES}\n\"${filename_temp}\",")
171 SET(GDCM_DATA_SEQ_IMAGES)
172 FOREACH(filename ${GDCM_DATA_SEQ_IMAGES_GLOB})
173 GET_FILENAME_COMPONENT(filename_temp ${filename} NAME)
174 STRING(REGEX MATCH ${filename_temp} bad_dicom ${BLACK_LIST})
176 STRING(REGEX REPLACE "(.*)FileSeq0(.*)" "\\1FileSeq%d\\2" filename_temp2 ${filename_temp})
178 SET(GDCM_DATA_SEQ_IMAGES "${GDCM_DATA_SEQ_IMAGES}\n\"${filename_temp2}\",")
182 # Populate GDCM_DATA_IMAGES:
183 FILE(WRITE "${GDCM_BINARY_DIR}/gdcmDataImages.h"
184 "const char * const gdcmDataImages[] = { ${GDCM_DATA_IMAGES}\n0 };\n"
187 # Populate GDCM_DATA_SEQ_IMAGES:
188 FILE(WRITE "${GDCM_BINARY_DIR}/gdcmDataSeqImages.h"
189 "const char * const gdcmDataSeqImages[] = { ${GDCM_DATA_SEQ_IMAGES}\n0 };\n"