1 # CMakeLists for Testing purpose
2 # Cxx file that need a file to run should be place aproprietly
4 SET(CXX_TEST_PATH ${EXECUTABLE_OUTPUT_PATH})
6 SET(GDCM_TESTS ${CXX_TEST_PATH}/gdcmTests)
8 # add test that does not require data:
9 # They usally return if no argument is given
20 TestDicomDirElement.cxx
24 # add tests that require data
26 SET(TEST_SOURCES ${TEST_SOURCES}
29 TestPrintAllDocument.cxx # includes generated gdcmDataImages.h
30 TestAllEntryVerify.cxx # includes generated gdcmDataImages.h
31 TestAllReadCompareDicom.cxx # includes generated gdcmDataImages.h
32 TestReadWriteReadCompare.cxx # includes generated gdcmDataImages.h
33 #TestCopyDicom.cxx # includes generated gdcmDataImages.h
34 TestCopyRescaleDicom.cxx # includes generated gdcmDataImages.h
38 TestDicomDir.cxx # require DICOMDIR
39 TestBuildUpDicomDir.cxx # writes a file named "NewDICOMDIR"
40 TestMakeDicomDir.cxx # writes a file named "NewDICOMDIR"
41 TestSerieHelper.cxx # uses gdcmData as a default root directory
43 # add test that require VTK:
45 IF(${VTK_MAJOR_VERSION} LESS 4)
46 MESSAGE(FATAL_ERROR "This VTK version is not supported, you are on your own !")
47 ELSE(${VTK_MAJOR_VERSION} LESS 4)
48 IF(${VTK_MAJOR_VERSION} EQUAL 4 AND ${VTK_MINOR_VERSION} EQUAL 4 AND ${VTK_BUILD_VERSION} LESS 3)
49 MESSAGE(FATAL_ERROR "This VTK version is not supported, you are on your own !"
50 "Although gdcm should compile fine. You just need to turn BUILD_TESTING:=OFF")
51 ENDIF(${VTK_MAJOR_VERSION} EQUAL 4 AND ${VTK_MINOR_VERSION} EQUAL 4 AND ${VTK_BUILD_VERSION} LESS 3)
52 # Include the VTK library since we know this is going to work
53 INCLUDE(${VTK_USE_FILE})
56 ${GDCM_SOURCE_DIR}/vtk/
58 SET(TEST_SOURCES ${TEST_SOURCES}
64 ENDIF(${VTK_MAJOR_VERSION} LESS 4)
66 ENDIF (GDCM_DATA_ROOT)
72 ${GDCM_SOURCE_DIR}/src/
76 CREATE_TEST_SOURCELIST(Tests gdcmTests.cxx ${TEST_SOURCES})
77 ADD_EXECUTABLE(gdcmTests ${Tests})
79 TARGET_LINK_LIBRARIES(gdcmTests vtkgdcm vtkRendering)
81 TARGET_LINK_LIBRARIES(gdcmTests gdcm)
84 SET (TestsToRun ${Tests})
85 REMOVE (TestsToRun gdcmTests.cxx)
87 # Loop over files and create executables
88 FOREACH(file ${TEST_SOURCES})
89 GET_FILENAME_COMPONENT(name ${file} NAME_WE)
90 ADD_TEST(${name} ${GDCM_TESTS} ${name})
91 ENDFOREACH(file ${TEST_SOURCES})
93 #-----------------------------------------------------------------------------
95 # We need to test the reading of all dicom images in the gdcmData directory
96 # First parse this directory and extract all images
98 IF(${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION} GREATER 1.9)
99 FILE(GLOB GDCM_DATA_IMAGES_GLOB
100 "${GDCM_DATA_ROOT}/*.acr"
101 "${GDCM_DATA_ROOT}/*.dcm"
102 "${GDCM_DATA_ROOT}/*.nema"
103 "${GDCM_DATA_ROOT}/*.ima"
105 FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB
106 "${GDCM_DATA_ROOT}/*FileSeq0.acr"
107 "${GDCM_DATA_ROOT}/*FileSeq0.dcm"
108 "${GDCM_DATA_ROOT}/*FileSeq0.nema"
109 "${GDCM_DATA_ROOT}/*FileSeq0.ima"
111 ELSE(${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION} GREATER 1.9)
112 # Since there is a bug in cmake 1.8.3, I'll have to do two separate globs
113 FILE(GLOB GDCM_DATA_IMAGES_GLOB_ACR
114 "${GDCM_DATA_ROOT}/*.acr"
116 FILE(GLOB GDCM_DATA_IMAGES_GLOB_DCM
117 "${GDCM_DATA_ROOT}/*.dcm"
119 FILE(GLOB GDCM_DATA_IMAGES_GLOB_NEMA
120 "${GDCM_DATA_ROOT}/*.nema"
122 FILE(GLOB GDCM_DATA_IMAGES_GLOB_IMA
123 "${GDCM_DATA_ROOT}/*.ima"
125 SET(GDCM_DATA_IMAGES_GLOB
126 ${GDCM_DATA_IMAGES_GLOB_DCM} ${GDCM_DATA_IMAGES_GLOB_ACR}
127 ${GDCM_DATA_IMAGES_GLOB_NEMA} ${GDCM_DATA_IMAGES_GLOB_IMA})
129 FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB_ACR
130 "${GDCM_DATA_ROOT}/*FileSeq0.acr"
132 FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB_DCM
133 "${GDCM_DATA_ROOT}/*FileSeq0.dcm"
135 FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB_NEMA
136 "${GDCM_DATA_ROOT}/*FileSeq0.nema"
138 FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB_IMA
139 "${GDCM_DATA_ROOT}/*FileSeq0.ima"
141 SET(GDCM_DATA_SEQ_IMAGES_GLOB
142 ${GDCM_DATA_SEQ_IMAGES_GLOB_DCM} ${GDCM_DATA_SEQ_IMAGES_GLOB_ACR}
143 ${GDCM_DATA_SEQ_IMAGES_GLOB_NEMA} ${GDCM_DATA_SEQ_IMAGES_GLOB_IMA})
144 ENDIF(${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION} GREATER 1.9)
146 # Black list of images known to break lots of readers (efilm, xmedcon ...):
149 # Multiframe Papyrus format image
150 # Just to remember this format exists, and is gdcm::File compliant
151 # (NOT gdcm::FileHelper ...)
152 # any contribution is welcome
153 "PET-cardio-Multiframe-Papyrus.dcm"
154 # From David Clunie's Compresion Dataset
155 "D_CLUNIE_CT1_JLSN.dcm"
156 "D_CLUNIE_CT1_JLSL.dcm"
157 "D_CLUNIE_CT1_J2KR.dcm"
158 "D_CLUNIE_CT1_J2KI.dcm"
159 #Not a Dicom Image, but a RT Object
160 "RS2.16.124.113534.2.3.5.0.120040728.21342.353.12747_anonimized.dcm"
162 "ETIAM_video_002.dcm"
165 # Add a special test that requires dciodvfy from dicom3tools
166 INCLUDE(${GDCM_SOURCE_DIR}/CMake/FindDicom3Tools.cmake)
168 # This is a GLOB expression, change it into a list separated with a comma and \n
169 SET(GDCM_DATA_IMAGES)
170 FOREACH(filename ${GDCM_DATA_IMAGES_GLOB})
171 GET_FILENAME_COMPONENT(filename_temp ${filename} NAME)
173 ADD_TEST("DCIODVFY-INPUT-${filename_temp}" "${DCIODVFY_EXECUTABLE}" "${filename}")
174 ADD_TEST("DCIODVFY-OUTPUT-${filename_temp}" "${DCIODVFY_EXECUTABLE}" "${GDCM_DATA_ROOT}/BaselineDicom/${filename_temp}")
175 ENDIF(DCIODVFY_FOUND)
176 STRING(REGEX MATCH ${filename_temp} bad_dicom ${BLACK_LIST})
178 SET(GDCM_DATA_IMAGES "${GDCM_DATA_IMAGES}\n\"${filename_temp}\",")
182 SET(GDCM_DATA_SEQ_IMAGES)
183 FOREACH(filename ${GDCM_DATA_SEQ_IMAGES_GLOB})
184 GET_FILENAME_COMPONENT(filename_temp ${filename} NAME)
185 STRING(REGEX MATCH ${filename_temp} bad_dicom ${BLACK_LIST})
187 STRING(REGEX REPLACE "(.*)FileSeq0(.*)" "\\1FileSeq%d\\2" filename_temp2 ${filename_temp})
189 SET(GDCM_DATA_SEQ_IMAGES "${GDCM_DATA_SEQ_IMAGES}\n\"${filename_temp2}\",")
193 # Populate GDCM_DATA_IMAGES:
194 FILE(WRITE "${GDCM_BINARY_DIR}/gdcmDataImages.h"
195 "const char * const gdcmDataImages[] = { ${GDCM_DATA_IMAGES}\n0 };\n"
198 # Populate GDCM_DATA_SEQ_IMAGES:
199 FILE(WRITE "${GDCM_BINARY_DIR}/gdcmDataSeqImages.h"
200 "const char * const gdcmDataSeqImages[] = { ${GDCM_DATA_SEQ_IMAGES}\n0 };\n"