1 # CMakeLists for Testing purpose
2 # Cxx file that need a file to run should be place aproprietly
4 SET(CXX_TEST_PATH ${EXECUTABLE_OUTPUT_PATH})
6 SET(GDCM_TESTS ${CXX_TEST_PATH}/gdcmTests)
8 # add test that does not require data:
9 # They usally return if no argument is given
15 # add tests that require data
17 SET(TEST_SOURCES ${TEST_SOURCES}
18 TestReadWriteReadCompare.cxx # includes generated gdcmDataImages.h
19 PrintAllDocument.cxx # includes generated gdcmDataImages.h
20 TestAllReadCompareDicom.cxx # includes generated gdcmDataImages.h
21 TestAllEntryVerify.cxx # includes generated gdcmDataImages.h
24 TestDicomDir.cxx # require DICOMDIR
28 # add test that require VTK:
31 ${GDCM_SOURCE_DIR}/vtk/
33 SET(TEST_SOURCES ${TEST_SOURCES}
37 ENDIF (GDCM_DATA_ROOT)
43 ${GDCM_SOURCE_DIR}/src/
47 CREATE_TEST_SOURCELIST(Tests gdcmTests.cxx ${TEST_SOURCES})
48 ADD_EXECUTABLE(gdcmTests ${Tests})
50 TARGET_LINK_LIBRARIES(gdcmTests vtkgdcm vtkRendering)
52 TARGET_LINK_LIBRARIES(gdcmTests gdcm)
55 SET (TestsToRun ${Tests})
56 REMOVE (TestsToRun gdcmTests.cxx)
58 # Loop over files and create executables
59 FOREACH(file ${TEST_SOURCES})
60 GET_FILENAME_COMPONENT(name ${file} NAME_WE)
62 # ADD_TEST(${name} ${GDCM_TESTS} ${name}
63 # -D ${GDCM_DATA_ROOT}
64 # -T ${GDCM_BINARY_DIR}/Testing/Temporary
65 # -V Baseline/gdcm/${name}.png)
66 # ELSE (GDCM_DATA_ROOT)
67 ADD_TEST(${name} ${GDCM_TESTS} ${name})
68 # ENDIF (GDCM_DATA_ROOT)
69 ENDFOREACH(file ${TEST_SOURCES})
71 #-----------------------------------------------------------------------------
73 # We need to test the reading of all dicom images in the gdcmData directory
74 # First parse this directory and extract all images
76 IF(${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION} GREATER 1.9)
77 FILE(GLOB GDCM_DATA_IMAGES_GLOB
78 "${GDCM_DATA_ROOT}/*.acr"
79 "${GDCM_DATA_ROOT}/*.dcm"
80 "${GDCM_DATA_ROOT}/*.nema"
81 "${GDCM_DATA_ROOT}/*.ima"
83 ELSE(${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION} GREATER 1.9)
84 # Since there is a bug in cmake 1.8.3, I'll have to do two separate globs
85 FILE(GLOB GDCM_DATA_IMAGES_GLOB_ACR
86 "${GDCM_DATA_ROOT}/*.acr"
88 FILE(GLOB GDCM_DATA_IMAGES_GLOB_DCM
89 "${GDCM_DATA_ROOT}/*.dcm"
91 FILE(GLOB GDCM_DATA_IMAGES_GLOB_NEMA
92 "${GDCM_DATA_ROOT}/*.nema"
94 FILE(GLOB GDCM_DATA_IMAGES_GLOB_IMA
95 "${GDCM_DATA_ROOT}/*.ima"
97 SET(GDCM_DATA_IMAGES_GLOB
98 ${GDCM_DATA_IMAGES_GLOB_DCM} ${GDCM_DATA_IMAGES_GLOB_ACR}
99 ${GDCM_DATA_IMAGES_GLOB_NEMA} ${GDCM_DATA_IMAGES_GLOB_IMA})
100 #SET(GDCM_DATA_IMAGES_GLOB ${GDCM_DATA_IMAGES_GLOB_ACR})
101 ENDIF(${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION} GREATER 1.9)
103 # Black list of images known to break lots of readers (efilm, xmedcon ...):
105 # serial killer (also segfaults vtkgdcmViewer, but NOT PrintFile)
106 "gdcm-JPEG-LossLessThoravision.dcm"
107 #temporarily remove as it kills my gnome session (but not kde)
108 "KODAK-12-MONO1-Odd_Terminated_Sequence.dcm"
112 "PHILIPS_Gyroscan-8-MONO2-Odd_Sequence.dcm"
115 #segfaults TestReadWriteReadCompare (same pb as below)
116 "gdcm-MR-SIEMENS-16-1.acr"
117 # see comments in gdcmData ref file TestAllEntryVerifyReference.txt
118 "SIEMENS_GBS_III-16-ACR_NEMA_1.acr"
119 #segfaults TestReadWriteReadCompare (pixels not parsed properly):
121 "PICKER-16-MONO2-Nested_icon.dcm"
122 "SIEMENS_Sonata-16-MONO2-Value_Multiplicity.dcm"
123 # Fails on TestAllReadCompareDicom at the RE-reading stage with message:
124 # Big trouble : Pixel Element (7fe0,10) NOT found
125 # The temporary file GDCMDATAHOME/BaselineDicom/SIEMENS_Sonata-12-MONO2-SQ.dcm
126 # stops after the first binEntry (binary entry) as can be seen with
127 # " gdcmbin/bin/PrintHeader
128 # GDCMDATAHOME/BaselineDicom/SIEMENS_Sonata-12-MONO2-SQ.dcm "
129 # and effectively the pixels are missing (as well as all the entries
130 # after tag 0029|1010)
131 # Note: this file was previously known as E00001S03I0015.dcm
132 "SIEMENS_Sonata-12-MONO2-SQ.dcm"
135 # gdcm-ACR-LibIDO seems to be cut
136 # test.acr is very bright
138 # This is a GLOB expression, change it into a list separated with a comma and \n
139 SET(GDCM_DATA_IMAGES)
140 FOREACH(filename ${GDCM_DATA_IMAGES_GLOB})
141 GET_FILENAME_COMPONENT(filename_temp ${filename} NAME)
142 STRING(REGEX MATCH ${filename_temp} bad_dicom ${BLACK_LIST})
144 SET(GDCM_DATA_IMAGES "${GDCM_DATA_IMAGES}\n\"${filename_temp}\",")
148 # Populate GDCM_DATA_IMAGES:
149 FILE(WRITE "${GDCM_BINARY_DIR}/gdcmDataImages.h"
150 "const char * const gdcmDataImages[] = { ${GDCM_DATA_IMAGES}\n0 };\n"