1 # CMakeLists for Testing purpose
2 # Cxx file that need a file to run should be place aproprietly
4 SET(CXX_TEST_PATH ${EXECUTABLE_OUTPUT_PATH})
6 SET(GDCM_TESTS ${CXX_TEST_PATH}/gdcmTests)
8 # add test that does not require data:
9 # They usally return if no argument is given
23 TestDicomDirElement.cxx
26 TestBuildUpDicomDir.cxx # writes a file named "NewDICOMDIR"
29 SET(TEST_SOURCES ${TEST_SOURCES}
34 # add tests that require data
36 SET(TEST_SOURCES ${TEST_SOURCES}
39 TestLoadAllDocumentsNoPrivNoSeq.cxx # includes generated gdcmDataImages.h
40 #TestLoadAllDocumentsNoShadow.cxx # includes generated gdcmDataImages.h
41 TestPrintAllDocument.cxx # includes generated gdcmDataImages.h
42 #TestAllEntryVerify.cxx # includes generated gdcmDataImages.h
43 #TestAllReadCompareDicom.cxx # includes generated gdcmDataImages.h
44 TestReadWriteReadCompare.cxx # includes generated gdcmDataImages.h
45 TestReadWriteJPEGReadCompare.cxx # includes generated gdcmDataImages.h
46 #TestReadWriteJPEG2000ReadCompare.cxx # includes generated gdcmDataImages.h
48 #TestCopyDicom.cxx # includes generated gdcmDataImages.h
49 # TestCopyRescaleDicom.cxx # includes generated gdcmDataImages.h
53 TestDicomDir.cxx # require DICOMDIR
55 TestMakeDicomDir.cxx # writes a file named "NewDICOMDIR"
56 TestSerieHelper.cxx # uses gdcmData as a default root directory
58 TestValidate.cxx #Just to have on overviews of oddities ...
60 # add test that require VTK:
63 IF("${VTK_MAJOR_VERSION}" LESS 4)
64 MESSAGE(FATAL_ERROR "This VTK version is not supported, you are on your own !")
65 ELSE("${VTK_MAJOR_VERSION}" LESS 4)
67 IF("${VTK_MAJOR_VERSION}" EQUAL 4 AND "${VTK_MINOR_VERSION}" EQUAL 2)
68 MESSAGE(FATAL_ERROR "This VTK version is not supported, you are on your own !"
69 "Although gdcm should compile fine. You just need to turn BUILD_TESTING:=OFF")
70 ENDIF("${VTK_MAJOR_VERSION}" EQUAL 4 AND "${VTK_MINOR_VERSION}" EQUAL 2)
71 IF("${VTK_MAJOR_VERSION}" EQUAL 4 AND "${VTK_MINOR_VERSION}" EQUAL 4 AND "${VTK_BUILD_VERSION}" LESS 3)
72 MESSAGE(FATAL_ERROR "This VTK version is not supported, you are on your own !"
73 "Although gdcm should compile fine. You just need to turn BUILD_TESTING:=OFF")
74 ENDIF("${VTK_MAJOR_VERSION}" EQUAL 4 AND "${VTK_MINOR_VERSION}" EQUAL 4 AND "${VTK_BUILD_VERSION}" LESS 3)
76 # Include the VTK library since we know this is going to work
77 INCLUDE(${VTK_USE_FILE})
80 ${GDCM_SOURCE_DIR}/vtk
82 SET(TEST_SOURCES ${TEST_SOURCES}
88 ENDIF("${VTK_MAJOR_VERSION}" LESS 4)
90 ENDIF (GDCM_DATA_ROOT)
96 ${GDCM_SOURCE_DIR}/src
100 CREATE_TEST_SOURCELIST(Tests gdcmTests.cxx ${TEST_SOURCES})
101 ADD_EXECUTABLE(gdcmTests ${Tests})
104 TARGET_LINK_LIBRARIES(gdcmTests vtkgdcm vtkRendering)
106 TARGET_LINK_LIBRARIES(gdcmTests gdcm)
107 ENDIF(GDCM_DATA_ROOT)
109 TARGET_LINK_LIBRARIES(gdcmTests gdcm)
112 SET (TestsToRun ${Tests})
113 REMOVE (TestsToRun gdcmTests.cxx)
115 # Loop over files and create executables
116 FOREACH(file ${TEST_SOURCES})
117 GET_FILENAME_COMPONENT(name ${file} NAME_WE)
118 ADD_TEST(${name} ${GDCM_TESTS} ${name})
119 ENDFOREACH(file ${TEST_SOURCES})
121 #-----------------------------------------------------------------------------
123 # We need to test the reading of all dicom images in the gdcmData directory
124 # First parse this directory and extract all images
126 FILE(GLOB GDCM_DATA_IMAGES_GLOB
127 "${GDCM_DATA_ROOT}/*.acr"
128 "${GDCM_DATA_ROOT}/*.dcm"
129 "${GDCM_DATA_ROOT}/*.nema"
130 "${GDCM_DATA_ROOT}/*.ima"
133 FILE(GLOB GDCM_DATA_EXTRA_IMAGES_GLOB
134 "${GDCM_DATA_EXTRA_ROOT}/gdcmSampleData/images_of_interest/*.dcm"
136 #MESSAGE(${GDCM_DATA_EXTRA_IMAGES_GLOB})
138 # Black list of images known to break lots of readers (efilm, xmedcon ...):
140 # Multiframe Papyrus format image
141 # Just to remember this format exists, and is gdcm::File compliant
142 # (NOT gdcm::FileHelper ...)
143 # any contribution is welcome
144 "PET-cardio-Multiframe-Papyrus.dcm"
145 # From David Clunie's Compresion Dataset
146 "D_CLUNIE_CT1_JLSN.dcm"
147 "D_CLUNIE_CT1_JLSL.dcm"
148 #Not a Dicom Image, but a RT Object
149 "RS2.16.124.113534.2.3.5.0.120040728.21342.353.12747_anonimized.dcm"
151 "ETIAM_video_002.dcm"
152 #Something stupid occured in the code for LibIDO images.
153 #I Black list them for a while. JP
154 #"gdcm-ACR-LibIDO.acr"
155 "LIBIDO-24-ACR_NEMA-Rectangle.dcm"
156 #16 Bits per pixel images with LUT 16 Bits.
157 #I wait to be 100% sure before releasing them. JP
160 # Jasper cannot handle this image, only kakadu so far, unless you patch jasper
161 # but then it breaks other images...
162 "CT_Phillips_JPEG2K_Decompr_Problem.dcm"
164 #RTDOSE, 32 bits image : cannot be compressed
170 #Still cause troubles (see the .README.txt file for more details)
171 "MR_Philips_Intera_in_SQ_2001_e05f_item_wrong_lgt_use_NOSHADOWSEQ.dcm"
172 "MR_Philips_Intera_PrivateSequenceExplicitVR.dcm"
173 #The 2 previous images are identical !
174 #--> Replaced by more significant name
175 "MR_Philips_Intera_PrivateSequenceExplicitVR_in_SQ_2001_e05f_item_wrong_lgt_use_NOSHADOWSEQ.dcm"
177 #hexedit shows something *very* strange around offset 0x76e !
178 #the images looks *over*corrupted (on disc, not from the manufacturer!)
179 "MR_Philips_Intera_PrivateSequenceImplicitVR.dcm"
181 # Seems this one hangs on 64 bits processors ?!?
182 # I blacklist it until the pb is solved.
183 # (to get some more green on the Dasboards)
184 "MR_Philips-Intera_BreaksNOSHADOW.dcm"
187 # Create a specific list of dicom files that we know are part of a sequence
189 "SIEMENS_MAGNETOM-12-MONO2-FileSeq[0-9].dcm"
192 # Add a special test that requires dciodvfy from dicom3tools
193 INCLUDE(${GDCM_SOURCE_DIR}/CMake/FindDicom3Tools.cmake)
195 # This is a GLOB expression, change it into a list separated with a comma and \n
196 SET(GDCM_DATA_IMAGES)
197 SET(GDCM_DATA_SEQ_IMAGES)
198 FOREACH(filename ${GDCM_DATA_IMAGES_GLOB})
199 GET_FILENAME_COMPONENT(filename_temp ${filename} NAME)
201 #ADD_TEST("DCIODVFY-INPUT-${filename_temp}" "${DCIODVFY_EXECUTABLE}" "${filename}")
202 #ADD_TEST("DCIODVFY-OUTPUT-${filename_temp}" "${DCIODVFY_EXECUTABLE}" "${GDCM_DATA_ROOT}/BaselineDicom/${filename_temp}")
203 ENDIF(DCIODVFY_FOUND)
204 STRING(REGEX MATCH ${filename_temp} bad_dicom ${BLACK_LIST})
206 SET(GDCM_DATA_IMAGES "${GDCM_DATA_IMAGES}\n\"${filename_temp}\",")
207 # SEQ_LIST is a regular expression:
208 STRING(REGEX MATCH ${SEQ_LIST} is_seq ${filename_temp})
210 SET(GDCM_DATA_SEQ_IMAGES "${GDCM_DATA_SEQ_IMAGES}\n\"${filename_temp}\",")
217 FOREACH(filename ${GDCM_DATA_IMAGES_GLOB} ${GDCM_DATA_EXTRA_IMAGES_GLOB})
218 GET_FILENAME_COMPONENT(filename_temp ${filename} NAME)
219 STRING(REGEX MATCH ${filename_temp} bad_dicom ${BLACK_LIST})
222 FOREACH(mode a d x) #r
223 FOREACH(opt "" monochrome1 noshadowseq noshadow noseq rgb)
224 ADD_TEST(ReWrite-${mode}-${opt}-${filename_temp} ${EXECUTABLE_OUTPUT_PATH}/ReWrite filein=${filename} fileout=${GDCM_BINARY_DIR}/${mode}-${opt}-${filename_temp} mode=${mode} ${opt})
225 ADD_TEST(dcmdump-${mode}-${opt}-${filename_temp} /usr/bin/dcmdump -E -dc +ae ${GDCM_BINARY_DIR}/${mode}-${opt}-${filename_temp})
226 #ADD_TEST(ReWrite-${mode}-${opt}-${filename_temp}-bis ${EXECUTABLE_OUTPUT_PATH}/ReWrite filein=${GDCM_BINARY_DIR}/${mode}-${opt}-${filename_temp} fileout=${GDCM_BINARY_DIR}/reference.dcm mode=${mode} ${opt})
227 #ADD_TEST(diff-${mode}-${opt}-${filename_temp} /usr/bin/diff ${GDCM_BINARY_DIR}/${mode}-${opt}-${filename_temp} ${GDCM_BINARY_DIR}/reference.dcm)
230 ENDIF(BUILD_EXAMPLES)
233 ENDIF(GDCM_DCMTK_CHECK)
235 # Populate GDCM_DATA_IMAGES:
236 FILE(WRITE "${GDCM_BINARY_DIR}/gdcmDataImages.h"
237 "const char * const gdcmDataImages[] = { ${GDCM_DATA_IMAGES}\n0 };\n"
240 # Populate GDCM_DATA_SEQ_IMAGES:
241 FILE(WRITE "${GDCM_BINARY_DIR}/gdcmDataSeqImages.h"
242 "const char * const gdcmDataSeqImages[] = { ${GDCM_DATA_SEQ_IMAGES}\n0 };\n"
245 #-----------------------------------------------------------------------------
246 # Trying to solve a bizarre problem when loading shared lib if gdcm is static
247 # Therefore I disable the test when building SHAREDLIBS
248 IF(UNIX AND NOT BUILD_SHARED_LIBS)
249 ADD_LIBRARY(dynmodule MODULE dynmodule.cxx)
250 TARGET_LINK_LIBRARIES(dynmodule gdcm)
251 ADD_EXECUTABLE(loadmodule loadmodule.cxx )
252 TARGET_LINK_LIBRARIES(loadmodule gdcm -ldl)
253 ADD_TEST(loadmodule ${CXX_TEST_PATH}/loadmodule)
254 ENDIF(UNIX AND NOT BUILD_SHARED_LIBS)
257 #-----------------------------------------------------------------------------
258 # Do the build against an installed gdcm
259 SET(GDCM_TEST_INSTALL_LEFT "${CMAKE_INSTALL_PREFIX}")
260 SET(GDCM_TEST_INSTALL_RIGHT "${GDCM_BINARY_DIR}/InstallTest/Root")
261 STRING(COMPARE EQUAL "${GDCM_TEST_INSTALL_LEFT}" "${GDCM_TEST_INSTALL_RIGHT}"
263 IF(GDCM_TEST_INSTALL)
265 ${CMAKE_CTEST_COMMAND}
266 # ${GDCM_INSTALL_TEST_CONFIG_TYPE}
267 --build-and-test ${CMAKE_SOURCE_DIR} ${CMAKE_BINARY_DIR}
268 --build-generator ${CMAKE_GENERATOR}
270 --build-makeprogram ${CMAKE_MAKE_PROGRAM}
272 --build-target install)
273 ENDIF(GDCM_TEST_INSTALL)