1 # CMakeLists for Testing purpose
2 # Cxx file that need a file to run should be place aproprietly
4 SET(CXX_TEST_PATH ${EXECUTABLE_OUTPUT_PATH})
6 SET(GDCM_TESTS ${CXX_TEST_PATH}/gdcmTests)
8 # add test that does not require data:
9 # They usally return if no argument is given
16 TestDicomDirElement.cxx
23 # add tests that require data
25 SET(TEST_SOURCES ${TEST_SOURCES}
27 TestReadWriteReadCompare.cxx # includes generated gdcmDataImages.h
28 TestPrintAllDocument.cxx # includes generated gdcmDataImages.h
29 TestAllReadCompareDicom.cxx # includes generated gdcmDataImages.h
30 TestAllEntryVerify.cxx # includes generated gdcmDataImages.h
32 TestCopyDicom.cxx # includes generated gdcmDataImages.h
33 TestCopyRescaleDicom.cxx # includes generated gdcmDataImages.h
34 TestDicomDir.cxx # require DICOMDIR
35 TestBuildUpDicomDir.cxx # writes a file named "NewDICOMDIR"
36 TestMakeDicomDir.cxx # writes a file named "NewDICOMDIR"
38 TestSerieHelper.cxx # uses gdcmData as a default root directory
40 # add test that require VTK:
42 # Include the VTK library
43 INCLUDE(${VTK_USE_FILE})
46 ${GDCM_SOURCE_DIR}/vtk/
48 SET(TEST_SOURCES ${TEST_SOURCES}
54 ENDIF (GDCM_DATA_ROOT)
60 ${GDCM_SOURCE_DIR}/src/
64 CREATE_TEST_SOURCELIST(Tests gdcmTests.cxx ${TEST_SOURCES})
65 ADD_EXECUTABLE(gdcmTests ${Tests})
67 TARGET_LINK_LIBRARIES(gdcmTests vtkgdcm vtkRendering)
69 TARGET_LINK_LIBRARIES(gdcmTests gdcm)
72 SET (TestsToRun ${Tests})
73 REMOVE (TestsToRun gdcmTests.cxx)
75 # Loop over files and create executables
76 FOREACH(file ${TEST_SOURCES})
77 GET_FILENAME_COMPONENT(name ${file} NAME_WE)
79 # ADD_TEST(${name} ${GDCM_TESTS} ${name}
80 # -D ${GDCM_DATA_ROOT}
81 # -T ${GDCM_BINARY_DIR}/Testing/Temporary
82 # -V Baseline/gdcm/${name}.png)
83 # ELSE (GDCM_DATA_ROOT)
84 ADD_TEST(${name} ${GDCM_TESTS} ${name})
85 # ENDIF (GDCM_DATA_ROOT)
86 ENDFOREACH(file ${TEST_SOURCES})
88 #-----------------------------------------------------------------------------
90 # We need to test the reading of all dicom images in the gdcmData directory
91 # First parse this directory and extract all images
93 IF(${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION} GREATER 1.9)
94 FILE(GLOB GDCM_DATA_IMAGES_GLOB
95 "${GDCM_DATA_ROOT}/*.acr"
96 "${GDCM_DATA_ROOT}/*.dcm"
97 "${GDCM_DATA_ROOT}/*.nema"
98 "${GDCM_DATA_ROOT}/*.ima"
100 FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB
101 "${GDCM_DATA_ROOT}/*FileSeq0.acr"
102 "${GDCM_DATA_ROOT}/*FileSeq0.dcm"
103 "${GDCM_DATA_ROOT}/*FileSeq0.nema"
104 "${GDCM_DATA_ROOT}/*FileSeq0.ima"
106 ELSE(${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION} GREATER 1.9)
107 # Since there is a bug in cmake 1.8.3, I'll have to do two separate globs
108 FILE(GLOB GDCM_DATA_IMAGES_GLOB_ACR
109 "${GDCM_DATA_ROOT}/*.acr"
111 FILE(GLOB GDCM_DATA_IMAGES_GLOB_DCM
112 "${GDCM_DATA_ROOT}/*.dcm"
114 FILE(GLOB GDCM_DATA_IMAGES_GLOB_NEMA
115 "${GDCM_DATA_ROOT}/*.nema"
117 FILE(GLOB GDCM_DATA_IMAGES_GLOB_IMA
118 "${GDCM_DATA_ROOT}/*.ima"
120 SET(GDCM_DATA_IMAGES_GLOB
121 ${GDCM_DATA_IMAGES_GLOB_DCM} ${GDCM_DATA_IMAGES_GLOB_ACR}
122 ${GDCM_DATA_IMAGES_GLOB_NEMA} ${GDCM_DATA_IMAGES_GLOB_IMA})
124 FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB_ACR
125 "${GDCM_DATA_ROOT}/*FileSeq0.acr"
127 FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB_DCM
128 "${GDCM_DATA_ROOT}/*FileSeq0.dcm"
130 FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB_NEMA
131 "${GDCM_DATA_ROOT}/*FileSeq0.nema"
133 FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB_IMA
134 "${GDCM_DATA_ROOT}/*FileSeq0.ima"
136 SET(GDCM_DATA_SEQ_IMAGES_GLOB
137 ${GDCM_DATA_SEQ_IMAGES_GLOB_DCM} ${GDCM_DATA_SEQ_IMAGES_GLOB_ACR}
138 ${GDCM_DATA_SEQ_IMAGES_GLOB_NEMA} ${GDCM_DATA_SEQ_IMAGES_GLOB_IMA})
139 ENDIF(${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION} GREATER 1.9)
141 # Black list of images known to break lots of readers (efilm, xmedcon ...):
144 # Multiframe Papyrus format image
145 # Just to remember this format exists, and is gdcm::File compliant
146 # (NOT gdcm::FileHelper ...)
147 # any contribution is welcome
148 "PET-cardio-Multiframe-Papyrus.dcm"
149 # From David Clunie's Compresion Dataset
150 "D_CLUNIE_CT1_JLSN.dcm"
151 "D_CLUNIE_CT1_JLSL.dcm"
152 "D_CLUNIE_CT1_J2KR.dcm"
153 "D_CLUNIE_CT1_J2KI.dcm"
156 # Add a special test that requires dciodvfy from dicom3tools
157 INCLUDE(${GDCM_SOURCE_DIR}/CMake/FindDicom3Tools.cmake)
159 # This is a GLOB expression, change it into a list separated with a comma and \n
160 SET(GDCM_DATA_IMAGES)
161 FOREACH(filename ${GDCM_DATA_IMAGES_GLOB})
162 GET_FILENAME_COMPONENT(filename_temp ${filename} NAME)
164 ADD_TEST("Clunie-${filename_temp}" "${DCIODVFY_EXECUTABLE}" "${filename}")
165 ENDIF(DCIODVFY_FOUND)
166 STRING(REGEX MATCH ${filename_temp} bad_dicom ${BLACK_LIST})
168 SET(GDCM_DATA_IMAGES "${GDCM_DATA_IMAGES}\n\"${filename_temp}\",")
172 SET(GDCM_DATA_SEQ_IMAGES)
173 FOREACH(filename ${GDCM_DATA_SEQ_IMAGES_GLOB})
174 GET_FILENAME_COMPONENT(filename_temp ${filename} NAME)
175 STRING(REGEX MATCH ${filename_temp} bad_dicom ${BLACK_LIST})
177 STRING(REGEX REPLACE "(.*)FileSeq0(.*)" "\\1FileSeq%d\\2" filename_temp2 ${filename_temp})
179 SET(GDCM_DATA_SEQ_IMAGES "${GDCM_DATA_SEQ_IMAGES}\n\"${filename_temp2}\",")
183 # Populate GDCM_DATA_IMAGES:
184 FILE(WRITE "${GDCM_BINARY_DIR}/gdcmDataImages.h"
185 "const char * const gdcmDataImages[] = { ${GDCM_DATA_IMAGES}\n0 };\n"
188 # Populate GDCM_DATA_SEQ_IMAGES:
189 FILE(WRITE "${GDCM_BINARY_DIR}/gdcmDataSeqImages.h"
190 "const char * const gdcmDataSeqImages[] = { ${GDCM_DATA_SEQ_IMAGES}\n0 };\n"