1 # CMakeLists for Testing purpose
2 # Cxx file that need a file to run should be place aproprietly
4 SET(CXX_TEST_PATH ${EXECUTABLE_OUTPUT_PATH})
6 SET(GDCM_TESTS ${CXX_TEST_PATH}/gdcmTests)
8 # add test that does not require data:
9 # They usally return if no argument is given
23 TestDicomDirElement.cxx
26 TestBuildUpDicomDir.cxx # writes a file named "NewDICOMDIR"
29 SET(TEST_SOURCES ${TEST_SOURCES}
34 # add tests that require data
36 SET(TEST_SOURCES ${TEST_SOURCES}
39 TestLoadAllDocumentsNoPrivNoSeq.cxx # includes generated gdcmDataImages.h
40 #TestLoadAllDocumentsNoShadow.cxx # includes generated gdcmDataImages.h
41 TestPrintAllDocument.cxx # includes generated gdcmDataImages.h
42 #TestAllEntryVerify.cxx # includes generated gdcmDataImages.h
43 #TestAllReadCompareDicom.cxx # includes generated gdcmDataImages.h
44 TestReadWriteReadCompare.cxx # includes generated gdcmDataImages.h
45 TestReadWriteJPEGReadCompare.cxx # includes generated gdcmDataImages.h
46 #TestReadWriteJPEG2000ReadCompare.cxx # includes generated gdcmDataImages.h
48 #TestCopyDicom.cxx # includes generated gdcmDataImages.h
49 # TestCopyRescaleDicom.cxx # includes generated gdcmDataImages.h
53 TestDicomDir.cxx # require DICOMDIR
55 TestMakeDicomDir.cxx # writes a file named "NewDICOMDIR"
56 TestSerieHelper.cxx # uses gdcmData as a default root directory
58 TestValidate.cxx #Just to have on overviews of oddities ...
60 # add test that require VTK:
62 IF("${VTK_MAJOR_VERSION}" LESS 4)
63 MESSAGE(FATAL_ERROR "This VTK version is not supported, you are on your own !")
64 ELSE("${VTK_MAJOR_VERSION}" LESS 4)
65 IF("${VTK_MAJOR_VERSION}" EQUAL 4 AND "${VTK_MINOR_VERSION}" EQUAL 2)
66 MESSAGE(FATAL_ERROR "This VTK version is not supported, you are on your own !"
67 "Although gdcm should compile fine. You just need to turn BUILD_TESTING:=OFF")
68 ENDIF("${VTK_MAJOR_VERSION}" EQUAL 4 AND "${VTK_MINOR_VERSION}" EQUAL 2)
69 IF("${VTK_MAJOR_VERSION}" EQUAL 4 AND "${VTK_MINOR_VERSION}" EQUAL 4 AND "${VTK_BUILD_VERSION}" LESS 3)
70 MESSAGE(FATAL_ERROR "This VTK version is not supported, you are on your own !"
71 "Although gdcm should compile fine. You just need to turn BUILD_TESTING:=OFF")
72 ENDIF("${VTK_MAJOR_VERSION}" EQUAL 4 AND "${VTK_MINOR_VERSION}" EQUAL 4 AND "${VTK_BUILD_VERSION}" LESS 3)
73 # Include the VTK library since we know this is going to work
74 INCLUDE(${VTK_USE_FILE})
77 ${GDCM_SOURCE_DIR}/vtk
79 SET(TEST_SOURCES ${TEST_SOURCES}
85 ENDIF("${VTK_MAJOR_VERSION}" LESS 4)
87 ENDIF (GDCM_DATA_ROOT)
93 ${GDCM_SOURCE_DIR}/src
97 CREATE_TEST_SOURCELIST(Tests gdcmTests.cxx ${TEST_SOURCES})
98 ADD_EXECUTABLE(gdcmTests ${Tests})
101 TARGET_LINK_LIBRARIES(gdcmTests vtkgdcm vtkRendering)
103 TARGET_LINK_LIBRARIES(gdcmTests gdcm)
104 ENDIF(GDCM_DATA_ROOT)
106 TARGET_LINK_LIBRARIES(gdcmTests gdcm)
109 SET (TestsToRun ${Tests})
110 REMOVE (TestsToRun gdcmTests.cxx)
112 # Loop over files and create executables
113 FOREACH(file ${TEST_SOURCES})
114 GET_FILENAME_COMPONENT(name ${file} NAME_WE)
115 ADD_TEST(${name} ${GDCM_TESTS} ${name})
116 ENDFOREACH(file ${TEST_SOURCES})
118 #-----------------------------------------------------------------------------
120 # We need to test the reading of all dicom images in the gdcmData directory
121 # First parse this directory and extract all images
123 FILE(GLOB GDCM_DATA_IMAGES_GLOB
124 "${GDCM_DATA_ROOT}/*.acr"
125 "${GDCM_DATA_ROOT}/*.dcm"
126 "${GDCM_DATA_ROOT}/*.nema"
127 "${GDCM_DATA_ROOT}/*.ima"
130 FILE(GLOB GDCM_DATA_EXTRA_IMAGES_GLOB
131 "${GDCM_DATA_EXTRA_ROOT}/gdcmSampleData/images_of_interest/*.dcm"
133 #MESSAGE(${GDCM_DATA_EXTRA_IMAGES_GLOB})
135 # Black list of images known to break lots of readers (efilm, xmedcon ...):
137 # Multiframe Papyrus format image
138 # Just to remember this format exists, and is gdcm::File compliant
139 # (NOT gdcm::FileHelper ...)
140 # any contribution is welcome
141 "PET-cardio-Multiframe-Papyrus.dcm"
142 # From David Clunie's Compresion Dataset
143 "D_CLUNIE_CT1_JLSN.dcm"
144 "D_CLUNIE_CT1_JLSL.dcm"
145 #Not a Dicom Image, but a RT Object
146 "RS2.16.124.113534.2.3.5.0.120040728.21342.353.12747_anonimized.dcm"
148 "ETIAM_video_002.dcm"
149 #Something stupid occured in the code for LibIDO images.
150 #I Black list them for a while. JP
151 #"gdcm-ACR-LibIDO.acr"
152 "LIBIDO-24-ACR_NEMA-Rectangle.dcm"
153 #16 Bits per pixel images with LUT 16 Bits.
154 #I wait to be 100% sure before releasing them. JP
157 # Jasper cannot handle this image, only kakadu so far, unless you patch jasper
158 # but then it breaks other images...
159 "CT_Phillips_JPEG2K_Decompr_Problem.dcm"
161 #RTDOSE, 32 bits image : cannot be compressed
167 #Still cause troubles (see the .README.txt file for more details)
168 "MR_Philips_Intera_in_SQ_2001_e05f_item_wrong_lgt_use_NOSHADOWSEQ.dcm"
169 "MR_Philips_Intera_PrivateSequenceExplicitVR.dcm"
170 #The 2 previous images are identical !
171 #--> Replaced by more significant name
172 "MR_Philips_Intera_PrivateSequenceExplicitVR_in_SQ_2001_e05f_item_wrong_lgt_use_NOSHADOWSEQ.dcm"
174 #hexedit shows something *very* strange around offset 0x76e !
175 #the images looks *over*corrupted (on disc, not from the manufacturer!)
176 "MR_Philips_Intera_PrivateSequenceImplicitVR.dcm"
178 # Seems this one hangs on 64 bits processors ?!?
179 # I blacklist it until the pb is solved.
180 # (to get some more green on the Dasboards)
181 "MR_Philips-Intera_BreaksNOSHADOW.dcm"
184 # Create a specific list of dicom files that we know are part of a sequence
186 "SIEMENS_MAGNETOM-12-MONO2-FileSeq[0-9].dcm"
189 # Add a special test that requires dciodvfy from dicom3tools
190 INCLUDE(${GDCM_SOURCE_DIR}/CMake/FindDicom3Tools.cmake)
192 # This is a GLOB expression, change it into a list separated with a comma and \n
193 SET(GDCM_DATA_IMAGES)
194 SET(GDCM_DATA_SEQ_IMAGES)
195 FOREACH(filename ${GDCM_DATA_IMAGES_GLOB})
196 GET_FILENAME_COMPONENT(filename_temp ${filename} NAME)
198 #ADD_TEST("DCIODVFY-INPUT-${filename_temp}" "${DCIODVFY_EXECUTABLE}" "${filename}")
199 #ADD_TEST("DCIODVFY-OUTPUT-${filename_temp}" "${DCIODVFY_EXECUTABLE}" "${GDCM_DATA_ROOT}/BaselineDicom/${filename_temp}")
200 ENDIF(DCIODVFY_FOUND)
201 STRING(REGEX MATCH ${filename_temp} bad_dicom ${BLACK_LIST})
203 SET(GDCM_DATA_IMAGES "${GDCM_DATA_IMAGES}\n\"${filename_temp}\",")
204 # SEQ_LIST is a regular expression:
205 STRING(REGEX MATCH ${SEQ_LIST} is_seq ${filename_temp})
207 SET(GDCM_DATA_SEQ_IMAGES "${GDCM_DATA_SEQ_IMAGES}\n\"${filename_temp}\",")
214 FOREACH(filename ${GDCM_DATA_IMAGES_GLOB} ${GDCM_DATA_EXTRA_IMAGES_GLOB})
215 GET_FILENAME_COMPONENT(filename_temp ${filename} NAME)
216 STRING(REGEX MATCH ${filename_temp} bad_dicom ${BLACK_LIST})
219 FOREACH(mode a d x) #r
220 FOREACH(opt "" monochrome1 noshadowseq noshadow noseq rgb)
221 ADD_TEST(ReWrite-${mode}-${opt}-${filename_temp} ${EXECUTABLE_OUTPUT_PATH}/ReWrite filein=${filename} fileout=${GDCM_BINARY_DIR}/${mode}-${opt}-${filename_temp} mode=${mode} ${opt})
222 ADD_TEST(dcmdump-${mode}-${opt}-${filename_temp} /usr/bin/dcmdump -E -dc +ae ${GDCM_BINARY_DIR}/${mode}-${opt}-${filename_temp})
223 #ADD_TEST(ReWrite-${mode}-${opt}-${filename_temp}-bis ${EXECUTABLE_OUTPUT_PATH}/ReWrite filein=${GDCM_BINARY_DIR}/${mode}-${opt}-${filename_temp} fileout=${GDCM_BINARY_DIR}/reference.dcm mode=${mode} ${opt})
224 #ADD_TEST(diff-${mode}-${opt}-${filename_temp} /usr/bin/diff ${GDCM_BINARY_DIR}/${mode}-${opt}-${filename_temp} ${GDCM_BINARY_DIR}/reference.dcm)
227 ENDIF(BUILD_EXAMPLES)
230 ENDIF(GDCM_DCMTK_CHECK)
232 # Populate GDCM_DATA_IMAGES:
233 FILE(WRITE "${GDCM_BINARY_DIR}/gdcmDataImages.h"
234 "const char * const gdcmDataImages[] = { ${GDCM_DATA_IMAGES}\n0 };\n"
237 # Populate GDCM_DATA_SEQ_IMAGES:
238 FILE(WRITE "${GDCM_BINARY_DIR}/gdcmDataSeqImages.h"
239 "const char * const gdcmDataSeqImages[] = { ${GDCM_DATA_SEQ_IMAGES}\n0 };\n"
242 #-----------------------------------------------------------------------------
243 # Trying to solve a bizarre problem when loading shared lib if gdcm is static
244 # Therefore I disable the test when building SHAREDLIBS
245 IF(UNIX AND NOT BUILD_SHARED_LIBS)
246 ADD_LIBRARY(dynmodule MODULE dynmodule.cxx)
247 TARGET_LINK_LIBRARIES(dynmodule gdcm)
248 ADD_EXECUTABLE(loadmodule loadmodule.cxx )
249 TARGET_LINK_LIBRARIES(loadmodule gdcm -ldl)
250 ADD_TEST(loadmodule ${CXX_TEST_PATH}/loadmodule)
251 ENDIF(UNIX AND NOT BUILD_SHARED_LIBS)
254 #-----------------------------------------------------------------------------
255 # Do the build against an installed gdcm
256 SET(GDCM_TEST_INSTALL_LEFT "${CMAKE_INSTALL_PREFIX}")
257 SET(GDCM_TEST_INSTALL_RIGHT "${GDCM_BINARY_DIR}/InstallTest/Root")
258 STRING(COMPARE EQUAL "${GDCM_TEST_INSTALL_LEFT}" "${GDCM_TEST_INSTALL_RIGHT}"
260 IF(GDCM_TEST_INSTALL)
262 ${CMAKE_CTEST_COMMAND}
263 # ${GDCM_INSTALL_TEST_CONFIG_TYPE}
264 --build-and-test ${CMAKE_SOURCE_DIR} ${CMAKE_BINARY_DIR}
265 --build-generator ${CMAKE_GENERATOR}
267 --build-makeprogram ${CMAKE_MAKE_PROGRAM}
269 --build-target install)
270 ENDIF(GDCM_TEST_INSTALL)