1 # CMakeLists for Testing purpose
2 # Cxx file that need a file to run should be place aproprietly
4 SET(CXX_TEST_PATH ${EXECUTABLE_OUTPUT_PATH})
6 SET(GDCM_TESTS ${CXX_TEST_PATH}/gdcmTests)
8 # add test that does not require data:
9 # They usally return if no argument is given
20 TestDicomDirElement.cxx
24 # add tests that require data
26 SET(TEST_SOURCES ${TEST_SOURCES}
29 TestPrintAllDocument.cxx # includes generated gdcmDataImages.h
30 TestAllEntryVerify.cxx # includes generated gdcmDataImages.h
31 TestAllReadCompareDicom.cxx # includes generated gdcmDataImages.h
32 TestReadWriteReadCompare.cxx # includes generated gdcmDataImages.h
33 #TestCopyDicom.cxx # includes generated gdcmDataImages.h
34 TestCopyRescaleDicom.cxx # includes generated gdcmDataImages.h
38 TestDicomDir.cxx # require DICOMDIR
39 TestBuildUpDicomDir.cxx # writes a file named "NewDICOMDIR"
40 TestMakeDicomDir.cxx # writes a file named "NewDICOMDIR"
41 TestSerieHelper.cxx # uses gdcmData as a default root directory
43 # add test that require VTK:
45 # Include the VTK library
46 INCLUDE(${VTK_USE_FILE})
49 ${GDCM_SOURCE_DIR}/vtk/
51 SET(TEST_SOURCES ${TEST_SOURCES}
58 ENDIF (GDCM_DATA_ROOT)
64 ${GDCM_SOURCE_DIR}/src/
68 CREATE_TEST_SOURCELIST(Tests gdcmTests.cxx ${TEST_SOURCES})
69 ADD_EXECUTABLE(gdcmTests ${Tests})
71 TARGET_LINK_LIBRARIES(gdcmTests vtkgdcm vtkRendering)
73 TARGET_LINK_LIBRARIES(gdcmTests gdcm)
76 SET (TestsToRun ${Tests})
77 REMOVE (TestsToRun gdcmTests.cxx)
79 # Loop over files and create executables
80 FOREACH(file ${TEST_SOURCES})
81 GET_FILENAME_COMPONENT(name ${file} NAME_WE)
82 ADD_TEST(${name} ${GDCM_TESTS} ${name})
83 ENDFOREACH(file ${TEST_SOURCES})
85 #-----------------------------------------------------------------------------
87 # We need to test the reading of all dicom images in the gdcmData directory
88 # First parse this directory and extract all images
90 IF(${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION} GREATER 1.9)
91 FILE(GLOB GDCM_DATA_IMAGES_GLOB
92 "${GDCM_DATA_ROOT}/*.acr"
93 "${GDCM_DATA_ROOT}/*.dcm"
94 "${GDCM_DATA_ROOT}/*.nema"
95 "${GDCM_DATA_ROOT}/*.ima"
97 FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB
98 "${GDCM_DATA_ROOT}/*FileSeq0.acr"
99 "${GDCM_DATA_ROOT}/*FileSeq0.dcm"
100 "${GDCM_DATA_ROOT}/*FileSeq0.nema"
101 "${GDCM_DATA_ROOT}/*FileSeq0.ima"
103 ELSE(${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION} GREATER 1.9)
104 # Since there is a bug in cmake 1.8.3, I'll have to do two separate globs
105 FILE(GLOB GDCM_DATA_IMAGES_GLOB_ACR
106 "${GDCM_DATA_ROOT}/*.acr"
108 FILE(GLOB GDCM_DATA_IMAGES_GLOB_DCM
109 "${GDCM_DATA_ROOT}/*.dcm"
111 FILE(GLOB GDCM_DATA_IMAGES_GLOB_NEMA
112 "${GDCM_DATA_ROOT}/*.nema"
114 FILE(GLOB GDCM_DATA_IMAGES_GLOB_IMA
115 "${GDCM_DATA_ROOT}/*.ima"
117 SET(GDCM_DATA_IMAGES_GLOB
118 ${GDCM_DATA_IMAGES_GLOB_DCM} ${GDCM_DATA_IMAGES_GLOB_ACR}
119 ${GDCM_DATA_IMAGES_GLOB_NEMA} ${GDCM_DATA_IMAGES_GLOB_IMA})
121 FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB_ACR
122 "${GDCM_DATA_ROOT}/*FileSeq0.acr"
124 FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB_DCM
125 "${GDCM_DATA_ROOT}/*FileSeq0.dcm"
127 FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB_NEMA
128 "${GDCM_DATA_ROOT}/*FileSeq0.nema"
130 FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB_IMA
131 "${GDCM_DATA_ROOT}/*FileSeq0.ima"
133 SET(GDCM_DATA_SEQ_IMAGES_GLOB
134 ${GDCM_DATA_SEQ_IMAGES_GLOB_DCM} ${GDCM_DATA_SEQ_IMAGES_GLOB_ACR}
135 ${GDCM_DATA_SEQ_IMAGES_GLOB_NEMA} ${GDCM_DATA_SEQ_IMAGES_GLOB_IMA})
136 ENDIF(${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION} GREATER 1.9)
138 # Black list of images known to break lots of readers (efilm, xmedcon ...):
141 # Multiframe Papyrus format image
142 # Just to remember this format exists, and is gdcm::File compliant
143 # (NOT gdcm::FileHelper ...)
144 # any contribution is welcome
145 "PET-cardio-Multiframe-Papyrus.dcm"
146 # From David Clunie's Compresion Dataset
147 "D_CLUNIE_CT1_JLSN.dcm"
148 "D_CLUNIE_CT1_JLSL.dcm"
149 "D_CLUNIE_CT1_J2KR.dcm"
150 "D_CLUNIE_CT1_J2KI.dcm"
151 #Not a Dicom Image, but a RT Object
152 "RS2.16.124.113534.2.3.5.0.120040728.21342.353.12747_anonimized.dcm"
154 "ETIAM_video_002.dcm"
157 # Add a special test that requires dciodvfy from dicom3tools
158 INCLUDE(${GDCM_SOURCE_DIR}/CMake/FindDicom3Tools.cmake)
160 # This is a GLOB expression, change it into a list separated with a comma and \n
161 SET(GDCM_DATA_IMAGES)
162 FOREACH(filename ${GDCM_DATA_IMAGES_GLOB})
163 GET_FILENAME_COMPONENT(filename_temp ${filename} NAME)
165 ADD_TEST("DCIODVFY-INPUT-${filename_temp}" "${DCIODVFY_EXECUTABLE}" "${filename}")
166 ADD_TEST("DCIODVFY-OUTPUT-${filename_temp}" "${DCIODVFY_EXECUTABLE}" "${GDCM_DATA_ROOT}/BaselineDicom/${filename_temp}")
167 ENDIF(DCIODVFY_FOUND)
168 STRING(REGEX MATCH ${filename_temp} bad_dicom ${BLACK_LIST})
170 SET(GDCM_DATA_IMAGES "${GDCM_DATA_IMAGES}\n\"${filename_temp}\",")
174 SET(GDCM_DATA_SEQ_IMAGES)
175 FOREACH(filename ${GDCM_DATA_SEQ_IMAGES_GLOB})
176 GET_FILENAME_COMPONENT(filename_temp ${filename} NAME)
177 STRING(REGEX MATCH ${filename_temp} bad_dicom ${BLACK_LIST})
179 STRING(REGEX REPLACE "(.*)FileSeq0(.*)" "\\1FileSeq%d\\2" filename_temp2 ${filename_temp})
181 SET(GDCM_DATA_SEQ_IMAGES "${GDCM_DATA_SEQ_IMAGES}\n\"${filename_temp2}\",")
185 # Populate GDCM_DATA_IMAGES:
186 FILE(WRITE "${GDCM_BINARY_DIR}/gdcmDataImages.h"
187 "const char * const gdcmDataImages[] = { ${GDCM_DATA_IMAGES}\n0 };\n"
190 # Populate GDCM_DATA_SEQ_IMAGES:
191 FILE(WRITE "${GDCM_BINARY_DIR}/gdcmDataSeqImages.h"
192 "const char * const gdcmDataSeqImages[] = { ${GDCM_DATA_SEQ_IMAGES}\n0 };\n"