Testing/CMakeLists.txt

   1 # CMakeLists for Testing purpose
   2 # Cxx file that need a file to run should be place aproprietly
   3
   4 SET(CXX_TEST_PATH ${EXECUTABLE_OUTPUT_PATH})
   5
   6 SET(GDCM_TESTS ${CXX_TEST_PATH}/gdcmTests)
   7
   8 # add test that does not require data:
   9 # They usally return if no argument is given
  10 SET(TEST_SOURCES
  11   TestBug.cxx
  12   TestHash.cxx
  13   TestTS.cxx
  14   TestVR.cxx
  15   TestUtil.cxx
  16   TestDicomString.cxx
  17 )
  18
  19 # add tests that require data
  20 IF (GDCM_DATA_ROOT)
  21   SET(TEST_SOURCES ${TEST_SOURCES}
  22     TestReadWriteReadCompare.cxx     # includes generated gdcmDataImages.h
  23     PrintAllDocument.cxx             # includes generated gdcmDataImages.h
  24     TestAllReadCompareDicom.cxx      # includes generated gdcmDataImages.h
  25     TestAllEntryVerify.cxx           # includes generated gdcmDataImages.h
  26     PrintDicomDir.cxx
  27     #TestChangeHeader.cxx
  28     TestDicomDir.cxx                 # require DICOMDIR
  29     BuildUpDicomDir.cxx              # writes a file named "NewDICOMDIR"
  30     makeDicomDir.cxx                 # writes a file named "NewDICOMDIR"
  31     TestCopyDicom.cxx
  32     TestCopyRescaleDicom.cxx
  33     TestWriteSimple.cxx
  34   )
  35   # add test that require VTK:
  36   IF(GDCM_VTK)
  37     # Include the VTK library
  38     INCLUDE(${VTK_USE_FILE})
  39
  40     INCLUDE_DIRECTORIES(
  41       ${GDCM_SOURCE_DIR}/vtk/
  42       )
  43     SET(TEST_SOURCES ${TEST_SOURCES}
  44       ShowDicom.cxx
  45       ShowDicomSeq.cxx
  46       TestWriteWithVTK.cxx
  47       )
  48   ENDIF(GDCM_VTK)
  49 ENDIF (GDCM_DATA_ROOT)
  50
  51
  52
  53 # include stuff
  54 INCLUDE_DIRECTORIES(
  55   ${GDCM_SOURCE_DIR}/src/
  56   ${GDCM_BINARY_DIR}/
  57 )
  58
  59 CREATE_TEST_SOURCELIST(Tests gdcmTests.cxx ${TEST_SOURCES})
  60 ADD_EXECUTABLE(gdcmTests ${Tests})
  61 IF(GDCM_VTK)
  62   TARGET_LINK_LIBRARIES(gdcmTests vtkgdcm vtkRendering)
  63 ELSE(GDCM_VTK)
  64   TARGET_LINK_LIBRARIES(gdcmTests gdcm)
  65 ENDIF(GDCM_VTK)
  66
  67 SET (TestsToRun ${Tests})
  68 REMOVE (TestsToRun gdcmTests.cxx)
  69
  70 # Loop over files and create executables
  71 FOREACH(file ${TEST_SOURCES})
  72   GET_FILENAME_COMPONENT(name ${file} NAME_WE)
  73 #  IF (GDCM_DATA_ROOT)
  74 #    ADD_TEST(${name} ${GDCM_TESTS} ${name}
  75 #        -D ${GDCM_DATA_ROOT}
  76 #        -T ${GDCM_BINARY_DIR}/Testing/Temporary
  77 #        -V Baseline/gdcm/${name}.png)
  78 #  ELSE (GDCM_DATA_ROOT)
  79     ADD_TEST(${name} ${GDCM_TESTS} ${name})
  80 #  ENDIF (GDCM_DATA_ROOT)
  81 ENDFOREACH(file ${TEST_SOURCES})
  82
  83 #-----------------------------------------------------------------------------
  84
  85 # We need to test the reading of all dicom images in the gdcmData directory
  86 # First parse this directory and extract all images
  87
  88 IF(${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION} GREATER 1.9)
  89   FILE(GLOB GDCM_DATA_IMAGES_GLOB
  90     "${GDCM_DATA_ROOT}/*.acr"
  91     "${GDCM_DATA_ROOT}/*.dcm"
  92     "${GDCM_DATA_ROOT}/*.nema"
  93     "${GDCM_DATA_ROOT}/*.ima"
  94     )
  95   FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB
  96     "${GDCM_DATA_ROOT}/*FileSeq0.acr"
  97     "${GDCM_DATA_ROOT}/*FileSeq0.dcm"
  98     "${GDCM_DATA_ROOT}/*FileSeq0.nema"
  99     "${GDCM_DATA_ROOT}/*FileSeq0.ima"
 100     )
 101 ELSE(${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION} GREATER 1.9)
 102   # Since there is a bug in cmake 1.8.3, I'll have to do two separate globs
 103   FILE(GLOB GDCM_DATA_IMAGES_GLOB_ACR
 104     "${GDCM_DATA_ROOT}/*.acr"
 105     )
 106   FILE(GLOB GDCM_DATA_IMAGES_GLOB_DCM
 107     "${GDCM_DATA_ROOT}/*.dcm"
 108     )
 109   FILE(GLOB GDCM_DATA_IMAGES_GLOB_NEMA
 110     "${GDCM_DATA_ROOT}/*.nema"
 111     )
 112   FILE(GLOB GDCM_DATA_IMAGES_GLOB_IMA
 113     "${GDCM_DATA_ROOT}/*.ima"
 114     )
 115   SET(GDCM_DATA_IMAGES_GLOB
 116     ${GDCM_DATA_IMAGES_GLOB_DCM} ${GDCM_DATA_IMAGES_GLOB_ACR}
 117     ${GDCM_DATA_IMAGES_GLOB_NEMA} ${GDCM_DATA_IMAGES_GLOB_IMA})
 118
 119   FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB_ACR
 120     "${GDCM_DATA_ROOT}/*FileSeq0.acr"
 121     )
 122   FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB_DCM
 123     "${GDCM_DATA_ROOT}/*FileSeq0.dcm"
 124     )
 125   FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB_NEMA
 126     "${GDCM_DATA_ROOT}/*FileSeq0.nema"
 127     )
 128   FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB_IMA
 129     "${GDCM_DATA_ROOT}/*FileSeq0.ima"
 130     )
 131   SET(GDCM_DATA_SEQ_IMAGES_GLOB
 132     ${GDCM_DATA_SEQ_IMAGES_GLOB_DCM} ${GDCM_DATA_SEQ_IMAGES_GLOB_ACR}
 133     ${GDCM_DATA_SEQ_IMAGES_GLOB_NEMA} ${GDCM_DATA_SEQ_IMAGES_GLOB_IMA})
 134 ENDIF(${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION} GREATER 1.9)
 135
 136 # Black list of images known to break lots of readers (efilm, xmedcon ...):
 137 SET(BLACK_LIST
 138   # serial killer (also segfaults vtkgdcmViewer, but NOT PrintFile)
 139   "gdcm-JPEG-LossLessThoravision.dcm"
 140
 141   # Mathieu: temporarily remove as it kills my gnome session (but not kde)
 142   # JPR: also breaks TestReadWriteReadCompare : Pixel differ (as expanded
 143   #      in memory)
 144   "KODAK-12-MONO1-Odd_Terminated_Sequence.dcm"
 145   )
 146
 147 # This is a GLOB expression, change it into a list separated with a comma and \n
 148 SET(GDCM_DATA_IMAGES)
 149 FOREACH(filename ${GDCM_DATA_IMAGES_GLOB})
 150   GET_FILENAME_COMPONENT(filename_temp ${filename} NAME)
 151   STRING(REGEX MATCH ${filename_temp} bad_dicom ${BLACK_LIST})
 152   IF(NOT bad_dicom)
 153     SET(GDCM_DATA_IMAGES "${GDCM_DATA_IMAGES}\n\"${filename_temp}\",")
 154   ENDIF(NOT bad_dicom)
 155 ENDFOREACH(filename)
 156
 157 SET(GDCM_DATA_SEQ_IMAGES)
 158 FOREACH(filename ${GDCM_DATA_SEQ_IMAGES_GLOB})
 159   GET_FILENAME_COMPONENT(filename_temp ${filename} NAME)
 160   STRING(REGEX MATCH ${filename_temp} bad_dicom ${BLACK_LIST})
 161   IF(NOT bad_dicom)
 162     STRING(REGEX REPLACE "(.*)FileSeq0(.*)" "\\1FileSeq%d\\2" filename_temp2 ${filename_temp})
 163
 164     SET(GDCM_DATA_SEQ_IMAGES "${GDCM_DATA_SEQ_IMAGES}\n\"${filename_temp2}\",")
 165   ENDIF(NOT bad_dicom)
 166 ENDFOREACH(filename)
 167
 168 # Populate GDCM_DATA_IMAGES:
 169 FILE(WRITE "${GDCM_BINARY_DIR}/gdcmDataImages.h"
 170   "const char * const gdcmDataImages[] = { ${GDCM_DATA_IMAGES}\n0 };\n"
 171   )
 172
 173 # Populate GDCM_DATA_SEQ_IMAGES:
 174 FILE(WRITE "${GDCM_BINARY_DIR}/gdcmDataSeqImages.h"
 175   "const char * const gdcmDataSeqImages[] = { ${GDCM_DATA_SEQ_IMAGES}\n0 };\n"
 176   )