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[gdcm.git] / Testing / CMakeLists.txt
1 # CMakeLists for Testing purpose
2 # Cxx file that need a file to run should be place aproprietly
3
4 SET(CXX_TEST_PATH ${EXECUTABLE_OUTPUT_PATH})
5
6 SET(GDCM_TESTS ${CXX_TEST_PATH}/gdcmTests)
7
8 # add test that does not require data:
9 # They usally return if no argument is given
10 SET(TEST_SOURCES
11   TestEmpty.cxx
12   TestUtil.cxx
13   TestBug.cxx
14   TestHash.cxx
15   TestCommand.cxx
16   TestTS.cxx
17   TestVR.cxx
18   TestDictGroupName.cxx
19   TestDict.cxx
20   TestDataEntry.cxx
21   TestWriteSimple.cxx
22   TestImageSet.cxx
23   TestDicomDirElement.cxx
24   TestDicomString.cxx
25   TestEnumVR.cxx
26   TestBuildUpDicomDir.cxx          # writes a file named "NewDICOMDIR"
27 )
28 IF(UNIX OR WIN32)
29   SET(TEST_SOURCES ${TEST_SOURCES}
30     TestInline.cxx
31   )
32 ENDIF(UNIX OR WIN32)
33
34 # add tests that require data
35 IF (GDCM_DATA_ROOT)
36   SET(TEST_SOURCES ${TEST_SOURCES}
37     TestFileAccessors.cxx
38     TestMakeIcon.cxx
39     TestLoadAllDocumentsNoPrivNoSeq.cxx # includes generated gdcmDataImages.h
40     #TestLoadAllDocumentsNoShadow.cxx   # includes generated gdcmDataImages.h
41     TestPrintAllDocument.cxx            # includes generated gdcmDataImages.h
42     #TestAllEntryVerify.cxx             # includes generated gdcmDataImages.h
43     #TestAllReadCompareDicom.cxx        # includes generated gdcmDataImages.h
44     TestReadWriteReadCompare.cxx        # includes generated gdcmDataImages.h 
45     TestReadWriteJPEGReadCompare.cxx    # includes generated gdcmDataImages.h 
46     #TestReadWriteJPEG2000ReadCompare.cxx # includes generated gdcmDataImages.h     
47         
48     #TestCopyDicom.cxx                  # includes generated gdcmDataImages.h 
49     #    TestCopyRescaleDicom.cxx       # includes generated gdcmDataImages.h 
50     #TestChangeHeader.cxx
51     #    TestAnonymize.cxx
52     TestDirList.cxx
53     TestDicomDir.cxx                 # require DICOMDIR
54
55     TestMakeDicomDir.cxx             # writes a file named "NewDICOMDIR"
56     TestSerieHelper.cxx              # uses gdcmData as a default root directory    
57     TestAllVM.cxx
58     TestValidate.cxx                 #Just to have on overviews of oddities ...  
59   )
60   # add test that require VTK:
61   IF(GDCM_VTK)
62   
63     IF("${VTK_MAJOR_VERSION}" LESS 4)
64       MESSAGE(FATAL_ERROR "This VTK version is not supported, you are on your own !")
65     ELSE("${VTK_MAJOR_VERSION}" LESS 4)
66     
67       IF("${VTK_MAJOR_VERSION}" EQUAL 4 AND "${VTK_MINOR_VERSION}" EQUAL 2)
68         MESSAGE(FATAL_ERROR "This VTK version is not supported, you are on your own !"
69                              "Although gdcm should compile fine. You just need to turn BUILD_TESTING:=OFF")
70       ENDIF("${VTK_MAJOR_VERSION}" EQUAL 4 AND "${VTK_MINOR_VERSION}" EQUAL 2)
71       IF("${VTK_MAJOR_VERSION}" EQUAL 4 AND "${VTK_MINOR_VERSION}" EQUAL 4 AND "${VTK_BUILD_VERSION}" LESS 3)
72         MESSAGE(FATAL_ERROR "This VTK version is not supported, you are on your own !"
73                              "Although gdcm should compile fine. You just need to turn BUILD_TESTING:=OFF")
74       ENDIF("${VTK_MAJOR_VERSION}" EQUAL 4 AND "${VTK_MINOR_VERSION}" EQUAL 4 AND "${VTK_BUILD_VERSION}" LESS 3)
75       
76       # Include the VTK library since we know this is going to work
77       INCLUDE(${VTK_USE_FILE})
78
79       INCLUDE_DIRECTORIES(
80         ${GDCM_SOURCE_DIR}/vtk
81       )
82       SET(TEST_SOURCES ${TEST_SOURCES}
83         VTKTestRead.cxx
84         VTKTestReadSeq.cxx
85         VTKTestWrite.cxx
86         VTKTestWriteSeq.cxx
87       )
88     ENDIF("${VTK_MAJOR_VERSION}" LESS 4)
89   ENDIF(GDCM_VTK)
90 ENDIF (GDCM_DATA_ROOT)
91
92
93
94 # include stuff
95 INCLUDE_DIRECTORIES(
96   ${GDCM_SOURCE_DIR}/src
97   ${GDCM_BINARY_DIR}
98 )
99
100 CREATE_TEST_SOURCELIST(Tests gdcmTests.cxx ${TEST_SOURCES})
101 ADD_EXECUTABLE(gdcmTests ${Tests})
102 IF(GDCM_VTK)
103   IF(GDCM_DATA_ROOT)
104     TARGET_LINK_LIBRARIES(gdcmTests vtkgdcm vtkRendering)
105   ELSE(GDCM_DATA_ROOT)
106     TARGET_LINK_LIBRARIES(gdcmTests gdcm)
107   ENDIF(GDCM_DATA_ROOT)     
108 ELSE(GDCM_VTK)
109   TARGET_LINK_LIBRARIES(gdcmTests gdcm)
110 ENDIF(GDCM_VTK)
111
112 SET (TestsToRun ${Tests})
113 REMOVE (TestsToRun gdcmTests.cxx)
114
115 # Loop over files and create executables
116 FOREACH(file ${TEST_SOURCES})
117   GET_FILENAME_COMPONENT(name ${file} NAME_WE)
118   ADD_TEST(${name} ${GDCM_TESTS} ${name})
119 ENDFOREACH(file ${TEST_SOURCES})
120
121 #-----------------------------------------------------------------------------
122
123 # We need to test the reading of all dicom images in the gdcmData directory
124 # First parse this directory and extract all images
125
126 FILE(GLOB GDCM_DATA_IMAGES_GLOB
127   "${GDCM_DATA_ROOT}/*.acr"
128   "${GDCM_DATA_ROOT}/*.dcm"
129   "${GDCM_DATA_ROOT}/*.nema"
130   "${GDCM_DATA_ROOT}/*.ima"
131   )
132
133 FILE(GLOB GDCM_DATA_EXTRA_IMAGES_GLOB
134   "${GDCM_DATA_EXTRA_ROOT}/gdcmSampleData/images_of_interest/*.dcm"
135   )
136 #MESSAGE(${GDCM_DATA_EXTRA_IMAGES_GLOB})
137
138 # Black list of images known to break lots of readers (efilm, xmedcon ...):
139 SET(BLACK_LIST
140   # Multiframe Papyrus format image
141   # Just to remember this format exists, and is gdcm::File compliant
142   # (NOT gdcm::FileHelper ...)
143   # any contribution is welcome
144   "PET-cardio-Multiframe-Papyrus.dcm"
145   # From David Clunie's Compresion Dataset  
146   "D_CLUNIE_CT1_JLSN.dcm"
147   "D_CLUNIE_CT1_JLSL.dcm"
148   #Not a Dicom Image, but a RT Object
149   "RS2.16.124.113534.2.3.5.0.120040728.21342.353.12747_anonimized.dcm" 
150   #Dicom MPEG image
151   "ETIAM_video_002.dcm"
152   #Something stupid occured in the code for LibIDO images.
153   #I Black list them for a while. JP
154   #"gdcm-ACR-LibIDO.acr"
155   "LIBIDO-24-ACR_NEMA-Rectangle.dcm"
156   #16 Bits per pixel images with LUT 16 Bits.
157   #I wait to be 100% sure before releasing them. JP
158   "rle16sti.dcm"
159   "rle16loo.dcm"   
160   # Jasper cannot handle this image, only kakadu so far, unless you patch jasper
161   # but then it breaks other images...
162   "CT_Phillips_JPEG2K_Decompr_Problem.dcm"
163   
164   #RTDOSE, 32 bits image : cannot be compressed
165   #"RTDOSE.dcm"
166   
167   #
168   # ------------
169   #  
170   #Still cause troubles (see the .README.txt file for more details)  
171   "MR_Philips_Intera_in_SQ_2001_e05f_item_wrong_lgt_use_NOSHADOWSEQ.dcm"  
172   "MR_Philips_Intera_PrivateSequenceExplicitVR.dcm" 
173   #The 2 previous images are identical !
174   #--> Replaced by more significant name
175   "MR_Philips_Intera_PrivateSequenceExplicitVR_in_SQ_2001_e05f_item_wrong_lgt_use_NOSHADOWSEQ.dcm"
176
177   #hexedit shows something *very* strange around offset 0x76e !
178   #the images looks *over*corrupted (on disc, not from the manufacturer!)
179   "MR_Philips_Intera_PrivateSequenceImplicitVR.dcm"
180   
181   # Seems this one hangs on 64 bits processors ?!?
182   # I blacklist it until the pb is solved.
183   # (to get some more green on the Dasboards)
184   "MR_Philips-Intera_BreaksNOSHADOW.dcm"
185
186   # No way we'll ever be able to read that...
187   "ELSCINT1_LOSSLESS_RICE.dcm"
188
189   # Are we even be able to support our own bugs ?
190   "SIEMENS_MAGNETOM-12-MONO2-GDCM12-VRUN.dcm"
191   "SIEMENS_GBS_III-16-ACR_NEMA_1-ULis2Bytes.dcm"
192   "SIEMENS_ImageLocationUN.dcm"
193   "TheralysGDCM120Bug.dcm"
194   "IM-0001-0066.dcm"
195   "DMCPACS_ExplicitImplicit_BogusIOP.dcm"
196   )
197
198 # Create a specific list of dicom files that we know are part of a sequence
199 SET(SEQ_LIST
200   "SIEMENS_MAGNETOM-12-MONO2-FileSeq[0-9].dcm"
201   )
202
203 # Add a special test that requires dciodvfy from dicom3tools
204 INCLUDE(${GDCM_SOURCE_DIR}/CMake/FindDicom3Tools.cmake)
205
206 # This is a GLOB expression, change it into a list separated with a comma and \n
207 SET(GDCM_DATA_IMAGES)
208 SET(GDCM_DATA_SEQ_IMAGES)
209 FOREACH(filename ${GDCM_DATA_IMAGES_GLOB})
210   GET_FILENAME_COMPONENT(filename_temp ${filename} NAME)
211   IF(DCIODVFY_FOUND)
212     #ADD_TEST("DCIODVFY-INPUT-${filename_temp}" "${DCIODVFY_EXECUTABLE}" "${filename}")
213     #ADD_TEST("DCIODVFY-OUTPUT-${filename_temp}" "${DCIODVFY_EXECUTABLE}" "${GDCM_DATA_ROOT}/BaselineDicom/${filename_temp}")
214   ENDIF(DCIODVFY_FOUND)
215   STRING(REGEX MATCH ${filename_temp} bad_dicom ${BLACK_LIST})
216   IF(NOT bad_dicom)
217     SET(GDCM_DATA_IMAGES "${GDCM_DATA_IMAGES}\n\"${filename_temp}\",")
218     # SEQ_LIST is a regular expression:
219     STRING(REGEX MATCH ${SEQ_LIST} is_seq ${filename_temp})
220     IF(is_seq)
221       SET(GDCM_DATA_SEQ_IMAGES "${GDCM_DATA_SEQ_IMAGES}\n\"${filename_temp}\",")
222     ENDIF(is_seq)
223   ENDIF(NOT bad_dicom)
224 ENDFOREACH(filename)
225
226 # Paranoid / dcmdump
227 IF(GDCM_DCMTK_CHECK)
228 FOREACH(filename ${GDCM_DATA_IMAGES_GLOB} ${GDCM_DATA_EXTRA_IMAGES_GLOB})
229   GET_FILENAME_COMPONENT(filename_temp ${filename} NAME)
230   STRING(REGEX MATCH ${filename_temp} bad_dicom ${BLACK_LIST})
231   IF(NOT bad_dicom)
232     IF(BUILD_EXAMPLES)
233       FOREACH(mode a d x) #r
234         FOREACH(opt "" monochrome1 noshadowseq noshadow noseq rgb)
235           ADD_TEST(ReWrite-${mode}-${opt}-${filename_temp} ${EXECUTABLE_OUTPUT_PATH}/ReWrite filein=${filename} fileout=${GDCM_BINARY_DIR}/${mode}-${opt}-${filename_temp} mode=${mode} ${opt})
236           ADD_TEST(dcmdump-${mode}-${opt}-${filename_temp} /usr/bin/dcmdump -E -dc +ae ${GDCM_BINARY_DIR}/${mode}-${opt}-${filename_temp})
237           #ADD_TEST(ReWrite-${mode}-${opt}-${filename_temp}-bis ${EXECUTABLE_OUTPUT_PATH}/ReWrite filein=${GDCM_BINARY_DIR}/${mode}-${opt}-${filename_temp} fileout=${GDCM_BINARY_DIR}/reference.dcm mode=${mode} ${opt})
238           #ADD_TEST(diff-${mode}-${opt}-${filename_temp} /usr/bin/diff ${GDCM_BINARY_DIR}/${mode}-${opt}-${filename_temp} ${GDCM_BINARY_DIR}/reference.dcm)
239         ENDFOREACH(opt)
240       ENDFOREACH(mode)
241     ENDIF(BUILD_EXAMPLES)
242   ENDIF(NOT bad_dicom)
243 ENDFOREACH(filename)
244 ENDIF(GDCM_DCMTK_CHECK)
245
246 # Populate GDCM_DATA_IMAGES:
247 FILE(WRITE "${GDCM_BINARY_DIR}/gdcmDataImages.h"
248   "const char * const gdcmDataImages[] = { ${GDCM_DATA_IMAGES}\n0 };\n" 
249 )
250
251 # Populate GDCM_DATA_SEQ_IMAGES:
252 FILE(WRITE "${GDCM_BINARY_DIR}/gdcmDataSeqImages.h"
253   "const char * const gdcmDataSeqImages[] = { ${GDCM_DATA_SEQ_IMAGES}\n0 };\n" 
254 )
255
256 #-----------------------------------------------------------------------------
257 # Trying to solve a bizarre problem when loading shared lib if gdcm is static
258 # Therefore I disable the test when building SHAREDLIBS
259 IF(UNIX AND NOT BUILD_SHARED_LIBS)
260   ADD_LIBRARY(dynmodule MODULE dynmodule.cxx)
261   TARGET_LINK_LIBRARIES(dynmodule gdcm)
262   ADD_EXECUTABLE(loadmodule loadmodule.cxx )
263   TARGET_LINK_LIBRARIES(loadmodule gdcm -ldl)
264   ADD_TEST(loadmodule ${CXX_TEST_PATH}/loadmodule)
265 ENDIF(UNIX AND NOT BUILD_SHARED_LIBS)
266
267
268 #-----------------------------------------------------------------------------
269 # Do the build against an installed gdcm
270 SET(GDCM_TEST_INSTALL_LEFT "${CMAKE_INSTALL_PREFIX}")
271 SET(GDCM_TEST_INSTALL_RIGHT "${GDCM_BINARY_DIR}/InstallTest/Root")
272 STRING(COMPARE EQUAL "${GDCM_TEST_INSTALL_LEFT}" "${GDCM_TEST_INSTALL_RIGHT}"
273   GDCM_TEST_INSTALL)
274 IF(GDCM_TEST_INSTALL)
275   ADD_TEST(Install
276     ${CMAKE_CTEST_COMMAND}
277     #  ${GDCM_INSTALL_TEST_CONFIG_TYPE}
278     --build-and-test ${CMAKE_SOURCE_DIR} ${CMAKE_BINARY_DIR}
279     --build-generator ${CMAKE_GENERATOR}
280     --build-project GDCM
281     --build-makeprogram ${CMAKE_MAKE_PROGRAM}
282     --build-noclean
283     --build-target install)
284 ENDIF(GDCM_TEST_INSTALL)
285