1 # CMakeLists for Testing purpose
2 # Cxx file that need a file to run should be place aproprietly
4 SET(CXX_TEST_PATH ${EXECUTABLE_OUTPUT_PATH})
6 SET(GDCM_TESTS ${CXX_TEST_PATH}/gdcmTests)
8 # add test that does not require data:
9 # They usally return if no argument is given
19 TestDicomDirElement.cxx
23 # add tests that require data
25 SET(TEST_SOURCES ${TEST_SOURCES}
27 TestPrintAllDocument.cxx # includes generated gdcmDataImages.h
28 TestAllEntryVerify.cxx # includes generated gdcmDataImages.h
29 TestAllReadCompareDicom.cxx # includes generated gdcmDataImages.h
30 TestReadWriteReadCompare.cxx # includes generated gdcmDataImages.h
31 #TestCopyDicom.cxx # includes generated gdcmDataImages.h
32 TestCopyRescaleDicom.cxx # includes generated gdcmDataImages.h
36 TestDicomDir.cxx # require DICOMDIR
37 TestBuildUpDicomDir.cxx # writes a file named "NewDICOMDIR"
38 TestMakeDicomDir.cxx # writes a file named "NewDICOMDIR"
39 TestSerieHelper.cxx # uses gdcmData as a default root directory
41 # add test that require VTK:
43 # Include the VTK library
44 INCLUDE(${VTK_USE_FILE})
47 ${GDCM_SOURCE_DIR}/vtk/
49 SET(TEST_SOURCES ${TEST_SOURCES}
56 ENDIF (GDCM_DATA_ROOT)
62 ${GDCM_SOURCE_DIR}/src/
66 CREATE_TEST_SOURCELIST(Tests gdcmTests.cxx ${TEST_SOURCES})
67 ADD_EXECUTABLE(gdcmTests ${Tests})
69 TARGET_LINK_LIBRARIES(gdcmTests vtkgdcm vtkRendering)
71 TARGET_LINK_LIBRARIES(gdcmTests gdcm)
74 SET (TestsToRun ${Tests})
75 REMOVE (TestsToRun gdcmTests.cxx)
77 # Loop over files and create executables
78 FOREACH(file ${TEST_SOURCES})
79 GET_FILENAME_COMPONENT(name ${file} NAME_WE)
80 ADD_TEST(${name} ${GDCM_TESTS} ${name})
81 ENDFOREACH(file ${TEST_SOURCES})
83 #-----------------------------------------------------------------------------
85 # We need to test the reading of all dicom images in the gdcmData directory
86 # First parse this directory and extract all images
88 IF(${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION} GREATER 1.9)
89 FILE(GLOB GDCM_DATA_IMAGES_GLOB
90 "${GDCM_DATA_ROOT}/*.acr"
91 "${GDCM_DATA_ROOT}/*.dcm"
92 "${GDCM_DATA_ROOT}/*.nema"
93 "${GDCM_DATA_ROOT}/*.ima"
95 FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB
96 "${GDCM_DATA_ROOT}/*FileSeq0.acr"
97 "${GDCM_DATA_ROOT}/*FileSeq0.dcm"
98 "${GDCM_DATA_ROOT}/*FileSeq0.nema"
99 "${GDCM_DATA_ROOT}/*FileSeq0.ima"
101 ELSE(${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION} GREATER 1.9)
102 # Since there is a bug in cmake 1.8.3, I'll have to do two separate globs
103 FILE(GLOB GDCM_DATA_IMAGES_GLOB_ACR
104 "${GDCM_DATA_ROOT}/*.acr"
106 FILE(GLOB GDCM_DATA_IMAGES_GLOB_DCM
107 "${GDCM_DATA_ROOT}/*.dcm"
109 FILE(GLOB GDCM_DATA_IMAGES_GLOB_NEMA
110 "${GDCM_DATA_ROOT}/*.nema"
112 FILE(GLOB GDCM_DATA_IMAGES_GLOB_IMA
113 "${GDCM_DATA_ROOT}/*.ima"
115 SET(GDCM_DATA_IMAGES_GLOB
116 ${GDCM_DATA_IMAGES_GLOB_DCM} ${GDCM_DATA_IMAGES_GLOB_ACR}
117 ${GDCM_DATA_IMAGES_GLOB_NEMA} ${GDCM_DATA_IMAGES_GLOB_IMA})
119 FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB_ACR
120 "${GDCM_DATA_ROOT}/*FileSeq0.acr"
122 FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB_DCM
123 "${GDCM_DATA_ROOT}/*FileSeq0.dcm"
125 FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB_NEMA
126 "${GDCM_DATA_ROOT}/*FileSeq0.nema"
128 FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB_IMA
129 "${GDCM_DATA_ROOT}/*FileSeq0.ima"
131 SET(GDCM_DATA_SEQ_IMAGES_GLOB
132 ${GDCM_DATA_SEQ_IMAGES_GLOB_DCM} ${GDCM_DATA_SEQ_IMAGES_GLOB_ACR}
133 ${GDCM_DATA_SEQ_IMAGES_GLOB_NEMA} ${GDCM_DATA_SEQ_IMAGES_GLOB_IMA})
134 ENDIF(${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION} GREATER 1.9)
136 # Black list of images known to break lots of readers (efilm, xmedcon ...):
139 # Multiframe Papyrus format image
140 # Just to remember this format exists, and is gdcm::File compliant
141 # (NOT gdcm::FileHelper ...)
142 # any contribution is welcome
143 "PET-cardio-Multiframe-Papyrus.dcm"
144 # From David Clunie's Compresion Dataset
145 "D_CLUNIE_CT1_JLSN.dcm"
146 "D_CLUNIE_CT1_JLSL.dcm"
147 "D_CLUNIE_CT1_J2KR.dcm"
148 "D_CLUNIE_CT1_J2KI.dcm"
151 # Add a special test that requires dciodvfy from dicom3tools
152 INCLUDE(${GDCM_SOURCE_DIR}/CMake/FindDicom3Tools.cmake)
154 # This is a GLOB expression, change it into a list separated with a comma and \n
155 SET(GDCM_DATA_IMAGES)
156 FOREACH(filename ${GDCM_DATA_IMAGES_GLOB})
157 GET_FILENAME_COMPONENT(filename_temp ${filename} NAME)
159 ADD_TEST("Clunie-${filename_temp}" "${DCIODVFY_EXECUTABLE}" "${filename}")
160 ENDIF(DCIODVFY_FOUND)
161 STRING(REGEX MATCH ${filename_temp} bad_dicom ${BLACK_LIST})
163 SET(GDCM_DATA_IMAGES "${GDCM_DATA_IMAGES}\n\"${filename_temp}\",")
167 SET(GDCM_DATA_SEQ_IMAGES)
168 FOREACH(filename ${GDCM_DATA_SEQ_IMAGES_GLOB})
169 GET_FILENAME_COMPONENT(filename_temp ${filename} NAME)
170 STRING(REGEX MATCH ${filename_temp} bad_dicom ${BLACK_LIST})
172 STRING(REGEX REPLACE "(.*)FileSeq0(.*)" "\\1FileSeq%d\\2" filename_temp2 ${filename_temp})
174 SET(GDCM_DATA_SEQ_IMAGES "${GDCM_DATA_SEQ_IMAGES}\n\"${filename_temp2}\",")
178 # Populate GDCM_DATA_IMAGES:
179 FILE(WRITE "${GDCM_BINARY_DIR}/gdcmDataImages.h"
180 "const char * const gdcmDataImages[] = { ${GDCM_DATA_IMAGES}\n0 };\n"
183 # Populate GDCM_DATA_SEQ_IMAGES:
184 FILE(WRITE "${GDCM_BINARY_DIR}/gdcmDataSeqImages.h"
185 "const char * const gdcmDataSeqImages[] = { ${GDCM_DATA_SEQ_IMAGES}\n0 };\n"