Testing/CMakeLists.txt

   1 # CMakeLists for Testing purpose
   2 # Cxx file that need a file to run should be place aproprietly
   3
   4 SET(CXX_TEST_PATH ${EXECUTABLE_OUTPUT_PATH})
   5
   6 SET(GDCM_TESTS ${CXX_TEST_PATH}/gdcmTests)
   7
   8 # add test that does not require data:
   9 # They usally return if no argument is given
  10 SET(TEST_SOURCES
  11   TestBug.cxx
  12   TestHash.cxx
  13   TestTS.cxx
  14   TestVR.cxx
  15   TestDicomDirElement.cxx
  16   TestUtil.cxx
  17   TestDicomString.cxx
  18   TestDict.cxx
  19   TestWriteSimple.cxx
  20 )
  21
  22 # add tests that require data
  23 IF (GDCM_DATA_ROOT)
  24   SET(TEST_SOURCES ${TEST_SOURCES}
  25     TestReadWriteReadCompare.cxx     # includes generated gdcmDataImages.h
  26     PrintAllDocument.cxx             # includes generated gdcmDataImages.h
  27     TestAllReadCompareDicom.cxx      # includes generated gdcmDataImages.h
  28     TestAllEntryVerify.cxx           # includes generated gdcmDataImages.h
  29     #TestChangeHeader.cxx
  30     TestCopyDicom.cxx                # includes generated gdcmDataImages.h
  31     TestCopyRescaleDicom.cxx         # includes generated gdcmDataImages.h
  32     TestDicomDir.cxx                 # require DICOMDIR
  33     BuildUpDicomDir.cxx              # writes a file named "NewDICOMDIR"
  34     makeDicomDir.cxx                 # writes a file named "NewDICOMDIR"
  35     TestDirList.cxx
  36   )
  37   # add test that require VTK:
  38   IF(GDCM_VTK)
  39     # Include the VTK library
  40     INCLUDE(${VTK_USE_FILE})
  41
  42     INCLUDE_DIRECTORIES(
  43       ${GDCM_SOURCE_DIR}/vtk/
  44       )
  45     SET(TEST_SOURCES ${TEST_SOURCES}
  46       VTKTestRead.cxx
  47       VTKTestReadSeq.cxx
  48       VTKTestWrite.cxx
  49       )
  50   ENDIF(GDCM_VTK)
  51 ENDIF (GDCM_DATA_ROOT)
  52
  53
  54
  55 # include stuff
  56 INCLUDE_DIRECTORIES(
  57   ${GDCM_SOURCE_DIR}/src/
  58   ${GDCM_BINARY_DIR}/
  59 )
  60
  61 CREATE_TEST_SOURCELIST(Tests gdcmTests.cxx ${TEST_SOURCES})
  62 ADD_EXECUTABLE(gdcmTests ${Tests})
  63 IF(GDCM_VTK)
  64   TARGET_LINK_LIBRARIES(gdcmTests vtkgdcm vtkRendering)
  65 ELSE(GDCM_VTK)
  66   TARGET_LINK_LIBRARIES(gdcmTests gdcm)
  67 ENDIF(GDCM_VTK)
  68
  69 SET (TestsToRun ${Tests})
  70 REMOVE (TestsToRun gdcmTests.cxx)
  71
  72 # Loop over files and create executables
  73 FOREACH(file ${TEST_SOURCES})
  74   GET_FILENAME_COMPONENT(name ${file} NAME_WE)
  75 #  IF (GDCM_DATA_ROOT)
  76 #    ADD_TEST(${name} ${GDCM_TESTS} ${name}
  77 #        -D ${GDCM_DATA_ROOT}
  78 #        -T ${GDCM_BINARY_DIR}/Testing/Temporary
  79 #        -V Baseline/gdcm/${name}.png)
  80 #  ELSE (GDCM_DATA_ROOT)
  81     ADD_TEST(${name} ${GDCM_TESTS} ${name})
  82 #  ENDIF (GDCM_DATA_ROOT)
  83 ENDFOREACH(file ${TEST_SOURCES})
  84
  85 #-----------------------------------------------------------------------------
  86
  87 # We need to test the reading of all dicom images in the gdcmData directory
  88 # First parse this directory and extract all images
  89
  90 IF(${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION} GREATER 1.9)
  91   FILE(GLOB GDCM_DATA_IMAGES_GLOB
  92     "${GDCM_DATA_ROOT}/*.acr"
  93     "${GDCM_DATA_ROOT}/*.dcm"
  94     "${GDCM_DATA_ROOT}/*.nema"
  95     "${GDCM_DATA_ROOT}/*.ima"
  96     )
  97   FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB
  98     "${GDCM_DATA_ROOT}/*FileSeq0.acr"
  99     "${GDCM_DATA_ROOT}/*FileSeq0.dcm"
 100     "${GDCM_DATA_ROOT}/*FileSeq0.nema"
 101     "${GDCM_DATA_ROOT}/*FileSeq0.ima"
 102     )
 103 ELSE(${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION} GREATER 1.9)
 104   # Since there is a bug in cmake 1.8.3, I'll have to do two separate globs
 105   FILE(GLOB GDCM_DATA_IMAGES_GLOB_ACR
 106     "${GDCM_DATA_ROOT}/*.acr"
 107     )
 108   FILE(GLOB GDCM_DATA_IMAGES_GLOB_DCM
 109     "${GDCM_DATA_ROOT}/*.dcm"
 110     )
 111   FILE(GLOB GDCM_DATA_IMAGES_GLOB_NEMA
 112     "${GDCM_DATA_ROOT}/*.nema"
 113     )
 114   FILE(GLOB GDCM_DATA_IMAGES_GLOB_IMA
 115     "${GDCM_DATA_ROOT}/*.ima"
 116     )
 117   SET(GDCM_DATA_IMAGES_GLOB
 118     ${GDCM_DATA_IMAGES_GLOB_DCM} ${GDCM_DATA_IMAGES_GLOB_ACR}
 119     ${GDCM_DATA_IMAGES_GLOB_NEMA} ${GDCM_DATA_IMAGES_GLOB_IMA})
 120
 121   FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB_ACR
 122     "${GDCM_DATA_ROOT}/*FileSeq0.acr"
 123     )
 124   FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB_DCM
 125     "${GDCM_DATA_ROOT}/*FileSeq0.dcm"
 126     )
 127   FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB_NEMA
 128     "${GDCM_DATA_ROOT}/*FileSeq0.nema"
 129     )
 130   FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB_IMA
 131     "${GDCM_DATA_ROOT}/*FileSeq0.ima"
 132     )
 133   SET(GDCM_DATA_SEQ_IMAGES_GLOB
 134     ${GDCM_DATA_SEQ_IMAGES_GLOB_DCM} ${GDCM_DATA_SEQ_IMAGES_GLOB_ACR}
 135     ${GDCM_DATA_SEQ_IMAGES_GLOB_NEMA} ${GDCM_DATA_SEQ_IMAGES_GLOB_IMA})
 136 ENDIF(${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION} GREATER 1.9)
 137
 138 # Black list of images known to break lots of readers (efilm, xmedcon ...):
 139 SET(BLACK_LIST
 140   # serial killer (also segfaults vtkgdcmViewer, but NOT PrintFile)
 141   #"gdcm-JPEG-LossLessThoravision.dcm"
 142
 143   # Mathieu: temporarily remove as it kills my gnome session (but not kde)
 144   # JPR: also breaks TestReadWriteReadCompare : Pixel differ (as expanded
 145   #      in memory)
 146   #"KODAK-12-MONO1-Odd_Terminated_Sequence.dcm"
 147
 148   # Multiframe Papyrus format image
 149   # Just to remember this format exist, and is gdcm::Header compliant
 150   # (NOT gdcm::File ...)
 151   # any contribution is welcome
 152   "PET-cardio-Multiframe-Papyrus.dcm"
 153   )
 154
 155
 156 # Add a special test that requires dciodvfy from dicom3tools
 157 INCLUDE(${GDCM_SOURCE_DIR}/FindDicom3Tools.cmake)
 158
 159 # This is a GLOB expression, change it into a list separated with a comma and \n
 160 SET(GDCM_DATA_IMAGES)
 161 FOREACH(filename ${GDCM_DATA_IMAGES_GLOB})
 162   GET_FILENAME_COMPONENT(filename_temp ${filename} NAME)
 163   IF(DCIODVFY_FOUND)
 164     ADD_TEST("Clunie-${filename_temp}" "${DCIODVFY_EXECUTABLE}" "${filename}")
 165   ENDIF(DCIODVFY_FOUND)
 166   STRING(REGEX MATCH ${filename_temp} bad_dicom ${BLACK_LIST})
 167   IF(NOT bad_dicom)
 168     SET(GDCM_DATA_IMAGES "${GDCM_DATA_IMAGES}\n\"${filename_temp}\",")
 169   ENDIF(NOT bad_dicom)
 170 ENDFOREACH(filename)
 171
 172 SET(GDCM_DATA_SEQ_IMAGES)
 173 FOREACH(filename ${GDCM_DATA_SEQ_IMAGES_GLOB})
 174   GET_FILENAME_COMPONENT(filename_temp ${filename} NAME)
 175   STRING(REGEX MATCH ${filename_temp} bad_dicom ${BLACK_LIST})
 176   IF(NOT bad_dicom)
 177     STRING(REGEX REPLACE "(.*)FileSeq0(.*)" "\\1FileSeq%d\\2" filename_temp2 ${filename_temp})
 178
 179     SET(GDCM_DATA_SEQ_IMAGES "${GDCM_DATA_SEQ_IMAGES}\n\"${filename_temp2}\",")
 180   ENDIF(NOT bad_dicom)
 181 ENDFOREACH(filename)
 182
 183 # Populate GDCM_DATA_IMAGES:
 184 FILE(WRITE "${GDCM_BINARY_DIR}/gdcmDataImages.h"
 185   "const char * const gdcmDataImages[] = { ${GDCM_DATA_IMAGES}\n0 };\n"
 186   )
 187
 188 # Populate GDCM_DATA_SEQ_IMAGES:
 189 FILE(WRITE "${GDCM_BINARY_DIR}/gdcmDataSeqImages.h"
 190   "const char * const gdcmDataSeqImages[] = { ${GDCM_DATA_SEQ_IMAGES}\n0 };\n"
 191   )