Testing/CMakeLists.txt

   1 # CMakeLists for Testing purpose
   2 # Cxx file that need a file to run should be place aproprietly
   3
   4 SET(CXX_TEST_PATH ${EXECUTABLE_OUTPUT_PATH})
   5
   6 SET(GDCM_TESTS ${CXX_TEST_PATH}/gdcmTests)
   7
   8 # add test that does not require data:
   9 # They usally return if no argument is given
  10 SET(TEST_SOURCES
  11   TestUtil.cxx
  12   TestBug.cxx
  13   TestHash.cxx
  14   TestTS.cxx
  15   TestVR.cxx
  16   TestDict.cxx
  17   TestWriteSimple.cxx
  18   TestSequence.cxx
  19   TestDicomDirElement.cxx
  20   TestDicomString.cxx
  21 )
  22
  23 # add tests that require data
  24 IF (GDCM_DATA_ROOT)
  25   SET(TEST_SOURCES ${TEST_SOURCES}
  26     TestFileAccessors.cxx
  27     TestPrintAllDocument.cxx         # includes generated gdcmDataImages.h
  28     TestAllEntryVerify.cxx           # includes generated gdcmDataImages.h
  29     TestAllReadCompareDicom.cxx      # includes generated gdcmDataImages.h
  30     TestReadWriteReadCompare.cxx     # includes generated gdcmDataImages.h
  31     #TestCopyDicom.cxx                # includes generated gdcmDataImages.h
  32     TestCopyRescaleDicom.cxx         # includes generated gdcmDataImages.h
  33     #TestChangeHeader.cxx
  34     TestAnonymize.cxx
  35     TestDirList.cxx
  36     TestDicomDir.cxx                 # require DICOMDIR
  37     TestBuildUpDicomDir.cxx          # writes a file named "NewDICOMDIR"
  38     TestMakeDicomDir.cxx             # writes a file named "NewDICOMDIR"
  39     TestSerieHelper.cxx              # uses gdcmData as a default root directory
  40   )
  41   # add test that require VTK:
  42   IF(GDCM_VTK)
  43     # Include the VTK library
  44     INCLUDE(${VTK_USE_FILE})
  45
  46     INCLUDE_DIRECTORIES(
  47       ${GDCM_SOURCE_DIR}/vtk/
  48     )
  49     SET(TEST_SOURCES ${TEST_SOURCES}
  50       VTKTestRead.cxx
  51       VTKTestReadSeq.cxx
  52       VTKTestWrite.cxx
  53       VTKTestWriteSeq.cxx
  54     )
  55   ENDIF(GDCM_VTK)
  56 ENDIF (GDCM_DATA_ROOT)
  57
  58
  59
  60 # include stuff
  61 INCLUDE_DIRECTORIES(
  62   ${GDCM_SOURCE_DIR}/src/
  63   ${GDCM_BINARY_DIR}/
  64 )
  65
  66 CREATE_TEST_SOURCELIST(Tests gdcmTests.cxx ${TEST_SOURCES})
  67 ADD_EXECUTABLE(gdcmTests ${Tests})
  68 IF(GDCM_VTK)
  69   TARGET_LINK_LIBRARIES(gdcmTests vtkgdcm vtkRendering)
  70 ELSE(GDCM_VTK)
  71   TARGET_LINK_LIBRARIES(gdcmTests gdcm)
  72 ENDIF(GDCM_VTK)
  73
  74 SET (TestsToRun ${Tests})
  75 REMOVE (TestsToRun gdcmTests.cxx)
  76
  77 # Loop over files and create executables
  78 FOREACH(file ${TEST_SOURCES})
  79   GET_FILENAME_COMPONENT(name ${file} NAME_WE)
  80   ADD_TEST(${name} ${GDCM_TESTS} ${name})
  81 ENDFOREACH(file ${TEST_SOURCES})
  82
  83 #-----------------------------------------------------------------------------
  84
  85 # We need to test the reading of all dicom images in the gdcmData directory
  86 # First parse this directory and extract all images
  87
  88 IF(${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION} GREATER 1.9)
  89   FILE(GLOB GDCM_DATA_IMAGES_GLOB
  90     "${GDCM_DATA_ROOT}/*.acr"
  91     "${GDCM_DATA_ROOT}/*.dcm"
  92     "${GDCM_DATA_ROOT}/*.nema"
  93     "${GDCM_DATA_ROOT}/*.ima"
  94     )
  95   FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB
  96     "${GDCM_DATA_ROOT}/*FileSeq0.acr"
  97     "${GDCM_DATA_ROOT}/*FileSeq0.dcm"
  98     "${GDCM_DATA_ROOT}/*FileSeq0.nema"
  99     "${GDCM_DATA_ROOT}/*FileSeq0.ima"
 100     )
 101 ELSE(${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION} GREATER 1.9)
 102   # Since there is a bug in cmake 1.8.3, I'll have to do two separate globs
 103   FILE(GLOB GDCM_DATA_IMAGES_GLOB_ACR
 104     "${GDCM_DATA_ROOT}/*.acr"
 105     )
 106   FILE(GLOB GDCM_DATA_IMAGES_GLOB_DCM
 107     "${GDCM_DATA_ROOT}/*.dcm"
 108     )
 109   FILE(GLOB GDCM_DATA_IMAGES_GLOB_NEMA
 110     "${GDCM_DATA_ROOT}/*.nema"
 111     )
 112   FILE(GLOB GDCM_DATA_IMAGES_GLOB_IMA
 113     "${GDCM_DATA_ROOT}/*.ima"
 114     )
 115   SET(GDCM_DATA_IMAGES_GLOB
 116     ${GDCM_DATA_IMAGES_GLOB_DCM} ${GDCM_DATA_IMAGES_GLOB_ACR}
 117     ${GDCM_DATA_IMAGES_GLOB_NEMA} ${GDCM_DATA_IMAGES_GLOB_IMA})
 118
 119   FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB_ACR
 120     "${GDCM_DATA_ROOT}/*FileSeq0.acr"
 121     )
 122   FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB_DCM
 123     "${GDCM_DATA_ROOT}/*FileSeq0.dcm"
 124     )
 125   FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB_NEMA
 126     "${GDCM_DATA_ROOT}/*FileSeq0.nema"
 127     )
 128   FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB_IMA
 129     "${GDCM_DATA_ROOT}/*FileSeq0.ima"
 130     )
 131   SET(GDCM_DATA_SEQ_IMAGES_GLOB
 132     ${GDCM_DATA_SEQ_IMAGES_GLOB_DCM} ${GDCM_DATA_SEQ_IMAGES_GLOB_ACR}
 133     ${GDCM_DATA_SEQ_IMAGES_GLOB_NEMA} ${GDCM_DATA_SEQ_IMAGES_GLOB_IMA})
 134 ENDIF(${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION} GREATER 1.9)
 135
 136 # Black list of images known to break lots of readers (efilm, xmedcon ...):
 137 SET(BLACK_LIST
 138
 139   # Multiframe Papyrus format image
 140   # Just to remember this format exists, and is gdcm::File compliant
 141   # (NOT gdcm::FileHelper ...)
 142   # any contribution is welcome
 143   "PET-cardio-Multiframe-Papyrus.dcm"
 144   # From David Clunie's Compresion Dataset
 145   "D_CLUNIE_CT1_JLSN.dcm"
 146   "D_CLUNIE_CT1_JLSL.dcm"
 147   "D_CLUNIE_CT1_J2KR.dcm"
 148   "D_CLUNIE_CT1_J2KI.dcm"
 149   )
 150
 151 # Add a special test that requires dciodvfy from dicom3tools
 152 INCLUDE(${GDCM_SOURCE_DIR}/CMake/FindDicom3Tools.cmake)
 153
 154 # This is a GLOB expression, change it into a list separated with a comma and \n
 155 SET(GDCM_DATA_IMAGES)
 156 FOREACH(filename ${GDCM_DATA_IMAGES_GLOB})
 157   GET_FILENAME_COMPONENT(filename_temp ${filename} NAME)
 158   IF(DCIODVFY_FOUND)
 159     ADD_TEST("Clunie-${filename_temp}" "${DCIODVFY_EXECUTABLE}" "${filename}")
 160   ENDIF(DCIODVFY_FOUND)
 161   STRING(REGEX MATCH ${filename_temp} bad_dicom ${BLACK_LIST})
 162   IF(NOT bad_dicom)
 163     SET(GDCM_DATA_IMAGES "${GDCM_DATA_IMAGES}\n\"${filename_temp}\",")
 164   ENDIF(NOT bad_dicom)
 165 ENDFOREACH(filename)
 166
 167 SET(GDCM_DATA_SEQ_IMAGES)
 168 FOREACH(filename ${GDCM_DATA_SEQ_IMAGES_GLOB})
 169   GET_FILENAME_COMPONENT(filename_temp ${filename} NAME)
 170   STRING(REGEX MATCH ${filename_temp} bad_dicom ${BLACK_LIST})
 171   IF(NOT bad_dicom)
 172     STRING(REGEX REPLACE "(.*)FileSeq0(.*)" "\\1FileSeq%d\\2" filename_temp2 ${filename_temp})
 173
 174     SET(GDCM_DATA_SEQ_IMAGES "${GDCM_DATA_SEQ_IMAGES}\n\"${filename_temp2}\",")
 175   ENDIF(NOT bad_dicom)
 176 ENDFOREACH(filename)
 177
 178 # Populate GDCM_DATA_IMAGES:
 179 FILE(WRITE "${GDCM_BINARY_DIR}/gdcmDataImages.h"
 180   "const char * const gdcmDataImages[] = { ${GDCM_DATA_IMAGES}\n0 };\n"
 181 )
 182
 183 # Populate GDCM_DATA_SEQ_IMAGES:
 184 FILE(WRITE "${GDCM_BINARY_DIR}/gdcmDataSeqImages.h"
 185   "const char * const gdcmDataSeqImages[] = { ${GDCM_DATA_SEQ_IMAGES}\n0 };\n"
 186 )