Testing/CMakeLists.txt

   1 # CMakeLists for Testing purpose
   2 # Cxx file that need a file to run should be place aproprietly
   3
   4 SET(CXX_TEST_PATH ${EXECUTABLE_OUTPUT_PATH})
   5
   6 SET(GDCM_TESTS ${CXX_TEST_PATH}/gdcmTests)
   7
   8 # add test that does not require data:
   9 # They usally return if no argument is given
  10 SET(TEST_SOURCES
  11   TestUtil.cxx
  12   TestBug.cxx
  13   TestHash.cxx
  14   TestTS.cxx
  15   TestVR.cxx
  16   TestDict.cxx
  17   TestWriteSimple.cxx
  18   TestSequence.cxx
  19   TestDicomDirElement.cxx
  20   TestDicomString.cxx
  21 )
  22
  23 # add tests that require data
  24 IF (GDCM_DATA_ROOT)
  25   SET(TEST_SOURCES ${TEST_SOURCES}
  26     TestFileAccessors.cxx
  27     TestPrintAllDocument.cxx         # includes generated gdcmDataImages.h
  28     TestAllEntryVerify.cxx           # includes generated gdcmDataImages.h
  29     TestAllReadCompareDicom.cxx      # includes generated gdcmDataImages.h
  30     TestReadWriteReadCompare.cxx     # includes generated gdcmDataImages.h
  31     #TestCopyDicom.cxx                # includes generated gdcmDataImages.h
  32     TestCopyRescaleDicom.cxx         # includes generated gdcmDataImages.h
  33     #TestChangeHeader.cxx
  34     TestDirList.cxx
  35     TestDicomDir.cxx                 # require DICOMDIR
  36     TestBuildUpDicomDir.cxx          # writes a file named "NewDICOMDIR"
  37     TestMakeDicomDir.cxx             # writes a file named "NewDICOMDIR"
  38     TestSerieHelper.cxx              # uses gdcmData as a default root directory
  39   )
  40   # add test that require VTK:
  41   IF(GDCM_VTK)
  42     # Include the VTK library
  43     INCLUDE(${VTK_USE_FILE})
  44
  45     INCLUDE_DIRECTORIES(
  46       ${GDCM_SOURCE_DIR}/vtk/
  47       )
  48     SET(TEST_SOURCES ${TEST_SOURCES}
  49       VTKTestRead.cxx
  50       VTKTestReadSeq.cxx
  51       VTKTestWrite.cxx
  52       )
  53   ENDIF(GDCM_VTK)
  54 ENDIF (GDCM_DATA_ROOT)
  55
  56
  57
  58 # include stuff
  59 INCLUDE_DIRECTORIES(
  60   ${GDCM_SOURCE_DIR}/src/
  61   ${GDCM_BINARY_DIR}/
  62 )
  63
  64 CREATE_TEST_SOURCELIST(Tests gdcmTests.cxx ${TEST_SOURCES})
  65 ADD_EXECUTABLE(gdcmTests ${Tests})
  66 IF(GDCM_VTK)
  67   TARGET_LINK_LIBRARIES(gdcmTests vtkgdcm vtkRendering)
  68 ELSE(GDCM_VTK)
  69   TARGET_LINK_LIBRARIES(gdcmTests gdcm)
  70 ENDIF(GDCM_VTK)
  71
  72 SET (TestsToRun ${Tests})
  73 REMOVE (TestsToRun gdcmTests.cxx)
  74
  75 # Loop over files and create executables
  76 FOREACH(file ${TEST_SOURCES})
  77   GET_FILENAME_COMPONENT(name ${file} NAME_WE)
  78 #  IF (GDCM_DATA_ROOT)
  79 #    ADD_TEST(${name} ${GDCM_TESTS} ${name}
  80 #        -D ${GDCM_DATA_ROOT}
  81 #        -T ${GDCM_BINARY_DIR}/Testing/Temporary
  82 #        -V Baseline/gdcm/${name}.png)
  83 #  ELSE (GDCM_DATA_ROOT)
  84     ADD_TEST(${name} ${GDCM_TESTS} ${name})
  85 #  ENDIF (GDCM_DATA_ROOT)
  86 ENDFOREACH(file ${TEST_SOURCES})
  87
  88 #-----------------------------------------------------------------------------
  89
  90 # We need to test the reading of all dicom images in the gdcmData directory
  91 # First parse this directory and extract all images
  92
  93 IF(${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION} GREATER 1.9)
  94   FILE(GLOB GDCM_DATA_IMAGES_GLOB
  95     "${GDCM_DATA_ROOT}/*.acr"
  96     "${GDCM_DATA_ROOT}/*.dcm"
  97     "${GDCM_DATA_ROOT}/*.nema"
  98     "${GDCM_DATA_ROOT}/*.ima"
  99     )
 100   FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB
 101     "${GDCM_DATA_ROOT}/*FileSeq0.acr"
 102     "${GDCM_DATA_ROOT}/*FileSeq0.dcm"
 103     "${GDCM_DATA_ROOT}/*FileSeq0.nema"
 104     "${GDCM_DATA_ROOT}/*FileSeq0.ima"
 105     )
 106 ELSE(${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION} GREATER 1.9)
 107   # Since there is a bug in cmake 1.8.3, I'll have to do two separate globs
 108   FILE(GLOB GDCM_DATA_IMAGES_GLOB_ACR
 109     "${GDCM_DATA_ROOT}/*.acr"
 110     )
 111   FILE(GLOB GDCM_DATA_IMAGES_GLOB_DCM
 112     "${GDCM_DATA_ROOT}/*.dcm"
 113     )
 114   FILE(GLOB GDCM_DATA_IMAGES_GLOB_NEMA
 115     "${GDCM_DATA_ROOT}/*.nema"
 116     )
 117   FILE(GLOB GDCM_DATA_IMAGES_GLOB_IMA
 118     "${GDCM_DATA_ROOT}/*.ima"
 119     )
 120   SET(GDCM_DATA_IMAGES_GLOB
 121     ${GDCM_DATA_IMAGES_GLOB_DCM} ${GDCM_DATA_IMAGES_GLOB_ACR}
 122     ${GDCM_DATA_IMAGES_GLOB_NEMA} ${GDCM_DATA_IMAGES_GLOB_IMA})
 123
 124   FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB_ACR
 125     "${GDCM_DATA_ROOT}/*FileSeq0.acr"
 126     )
 127   FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB_DCM
 128     "${GDCM_DATA_ROOT}/*FileSeq0.dcm"
 129     )
 130   FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB_NEMA
 131     "${GDCM_DATA_ROOT}/*FileSeq0.nema"
 132     )
 133   FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB_IMA
 134     "${GDCM_DATA_ROOT}/*FileSeq0.ima"
 135     )
 136   SET(GDCM_DATA_SEQ_IMAGES_GLOB
 137     ${GDCM_DATA_SEQ_IMAGES_GLOB_DCM} ${GDCM_DATA_SEQ_IMAGES_GLOB_ACR}
 138     ${GDCM_DATA_SEQ_IMAGES_GLOB_NEMA} ${GDCM_DATA_SEQ_IMAGES_GLOB_IMA})
 139 ENDIF(${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION} GREATER 1.9)
 140
 141 # Black list of images known to break lots of readers (efilm, xmedcon ...):
 142 SET(BLACK_LIST
 143
 144   # Multiframe Papyrus format image
 145   # Just to remember this format exists, and is gdcm::File compliant
 146   # (NOT gdcm::FileHelper ...)
 147   # any contribution is welcome
 148   "PET-cardio-Multiframe-Papyrus.dcm"
 149   # From David Clunie's Compresion Dataset
 150   "D_CLUNIE_CT1_JLSN.dcm"
 151   "D_CLUNIE_CT1_JLSL.dcm"
 152   "D_CLUNIE_CT1_J2KR.dcm"
 153   "D_CLUNIE_CT1_J2KI.dcm"
 154   )
 155
 156 # Add a special test that requires dciodvfy from dicom3tools
 157 INCLUDE(${GDCM_SOURCE_DIR}/CMake/FindDicom3Tools.cmake)
 158
 159 # This is a GLOB expression, change it into a list separated with a comma and \n
 160 SET(GDCM_DATA_IMAGES)
 161 FOREACH(filename ${GDCM_DATA_IMAGES_GLOB})
 162   GET_FILENAME_COMPONENT(filename_temp ${filename} NAME)
 163   IF(DCIODVFY_FOUND)
 164     ADD_TEST("Clunie-${filename_temp}" "${DCIODVFY_EXECUTABLE}" "${filename}")
 165   ENDIF(DCIODVFY_FOUND)
 166   STRING(REGEX MATCH ${filename_temp} bad_dicom ${BLACK_LIST})
 167   IF(NOT bad_dicom)
 168     SET(GDCM_DATA_IMAGES "${GDCM_DATA_IMAGES}\n\"${filename_temp}\",")
 169   ENDIF(NOT bad_dicom)
 170 ENDFOREACH(filename)
 171
 172 SET(GDCM_DATA_SEQ_IMAGES)
 173 FOREACH(filename ${GDCM_DATA_SEQ_IMAGES_GLOB})
 174   GET_FILENAME_COMPONENT(filename_temp ${filename} NAME)
 175   STRING(REGEX MATCH ${filename_temp} bad_dicom ${BLACK_LIST})
 176   IF(NOT bad_dicom)
 177     STRING(REGEX REPLACE "(.*)FileSeq0(.*)" "\\1FileSeq%d\\2" filename_temp2 ${filename_temp})
 178
 179     SET(GDCM_DATA_SEQ_IMAGES "${GDCM_DATA_SEQ_IMAGES}\n\"${filename_temp2}\",")
 180   ENDIF(NOT bad_dicom)
 181 ENDFOREACH(filename)
 182
 183 # Populate GDCM_DATA_IMAGES:
 184 FILE(WRITE "${GDCM_BINARY_DIR}/gdcmDataImages.h"
 185   "const char * const gdcmDataImages[] = { ${GDCM_DATA_IMAGES}\n0 };\n"
 186   )
 187
 188 # Populate GDCM_DATA_SEQ_IMAGES:
 189 FILE(WRITE "${GDCM_BINARY_DIR}/gdcmDataSeqImages.h"
 190   "const char * const gdcmDataSeqImages[] = { ${GDCM_DATA_SEQ_IMAGES}\n0 };\n"
 191   )