Testing/CMakeLists.txt

   1 # CMakeLists for Testing purpose
   2 # Cxx file that need a file to run should be place aproprietly
   3
   4 SET(CXX_TEST_PATH ${EXECUTABLE_OUTPUT_PATH})
   5
   6 SET(GDCM_TESTS ${CXX_TEST_PATH}/gdcmTests)
   7
   8 # add test that does not require data:
   9 # They usally return if no argument is given
  10 SET(TEST_SOURCES
  11   TestBug.cxx
  12   TestHash.cxx
  13   TestTS.cxx
  14   TestVR.cxx
  15   TestUtil.cxx
  16   TestDicomString.cxx
  17 )
  18
  19 # add tests that require data
  20 IF (GDCM_DATA_ROOT)
  21   SET(TEST_SOURCES ${TEST_SOURCES}
  22     TestReadWriteReadCompare.cxx     # includes generated gdcmDataImages.h
  23     PrintAllDocument.cxx             # includes generated gdcmDataImages.h
  24     TestAllReadCompareDicom.cxx      # includes generated gdcmDataImages.h
  25     TestAllEntryVerify.cxx           # includes generated gdcmDataImages.h
  26     #TestChangeHeader.cxx
  27     TestDicomDir.cxx                 # require DICOMDIR
  28     BuildUpDicomDir.cxx              # writes a file named "NewDICOMDIR"
  29     makeDicomDir.cxx                 # writes a file named "NewDICOMDIR"
  30     TestCopyDicom.cxx
  31     TestCopyRescaleDicom.cxx
  32     TestWriteSimple.cxx
  33   )
  34   # add test that require VTK:
  35   IF(GDCM_VTK)
  36     # Include the VTK library
  37     INCLUDE(${VTK_USE_FILE})
  38
  39     INCLUDE_DIRECTORIES(
  40       ${GDCM_SOURCE_DIR}/vtk/
  41       )
  42     SET(TEST_SOURCES ${TEST_SOURCES}
  43       ShowDicom.cxx
  44       ShowDicomSeq.cxx
  45       TestWriteWithVTK.cxx
  46       )
  47   ENDIF(GDCM_VTK)
  48 ENDIF (GDCM_DATA_ROOT)
  49
  50
  51
  52 # include stuff
  53 INCLUDE_DIRECTORIES(
  54   ${GDCM_SOURCE_DIR}/src/
  55   ${GDCM_BINARY_DIR}/
  56 )
  57
  58 CREATE_TEST_SOURCELIST(Tests gdcmTests.cxx ${TEST_SOURCES})
  59 ADD_EXECUTABLE(gdcmTests ${Tests})
  60 IF(GDCM_VTK)
  61   TARGET_LINK_LIBRARIES(gdcmTests vtkgdcm vtkRendering)
  62 ELSE(GDCM_VTK)
  63   TARGET_LINK_LIBRARIES(gdcmTests gdcm)
  64 ENDIF(GDCM_VTK)
  65
  66 SET (TestsToRun ${Tests})
  67 REMOVE (TestsToRun gdcmTests.cxx)
  68
  69 # Loop over files and create executables
  70 FOREACH(file ${TEST_SOURCES})
  71   GET_FILENAME_COMPONENT(name ${file} NAME_WE)
  72 #  IF (GDCM_DATA_ROOT)
  73 #    ADD_TEST(${name} ${GDCM_TESTS} ${name}
  74 #        -D ${GDCM_DATA_ROOT}
  75 #        -T ${GDCM_BINARY_DIR}/Testing/Temporary
  76 #        -V Baseline/gdcm/${name}.png)
  77 #  ELSE (GDCM_DATA_ROOT)
  78     ADD_TEST(${name} ${GDCM_TESTS} ${name})
  79 #  ENDIF (GDCM_DATA_ROOT)
  80 ENDFOREACH(file ${TEST_SOURCES})
  81
  82 #-----------------------------------------------------------------------------
  83
  84 # We need to test the reading of all dicom images in the gdcmData directory
  85 # First parse this directory and extract all images
  86
  87 IF(${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION} GREATER 1.9)
  88   FILE(GLOB GDCM_DATA_IMAGES_GLOB
  89     "${GDCM_DATA_ROOT}/*.acr"
  90     "${GDCM_DATA_ROOT}/*.dcm"
  91     "${GDCM_DATA_ROOT}/*.nema"
  92     "${GDCM_DATA_ROOT}/*.ima"
  93     )
  94   FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB
  95     "${GDCM_DATA_ROOT}/*FileSeq0.acr"
  96     "${GDCM_DATA_ROOT}/*FileSeq0.dcm"
  97     "${GDCM_DATA_ROOT}/*FileSeq0.nema"
  98     "${GDCM_DATA_ROOT}/*FileSeq0.ima"
  99     )
 100 ELSE(${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION} GREATER 1.9)
 101   # Since there is a bug in cmake 1.8.3, I'll have to do two separate globs
 102   FILE(GLOB GDCM_DATA_IMAGES_GLOB_ACR
 103     "${GDCM_DATA_ROOT}/*.acr"
 104     )
 105   FILE(GLOB GDCM_DATA_IMAGES_GLOB_DCM
 106     "${GDCM_DATA_ROOT}/*.dcm"
 107     )
 108   FILE(GLOB GDCM_DATA_IMAGES_GLOB_NEMA
 109     "${GDCM_DATA_ROOT}/*.nema"
 110     )
 111   FILE(GLOB GDCM_DATA_IMAGES_GLOB_IMA
 112     "${GDCM_DATA_ROOT}/*.ima"
 113     )
 114   SET(GDCM_DATA_IMAGES_GLOB
 115     ${GDCM_DATA_IMAGES_GLOB_DCM} ${GDCM_DATA_IMAGES_GLOB_ACR}
 116     ${GDCM_DATA_IMAGES_GLOB_NEMA} ${GDCM_DATA_IMAGES_GLOB_IMA})
 117
 118   FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB_ACR
 119     "${GDCM_DATA_ROOT}/*FileSeq0.acr"
 120     )
 121   FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB_DCM
 122     "${GDCM_DATA_ROOT}/*FileSeq0.dcm"
 123     )
 124   FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB_NEMA
 125     "${GDCM_DATA_ROOT}/*FileSeq0.nema"
 126     )
 127   FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB_IMA
 128     "${GDCM_DATA_ROOT}/*FileSeq0.ima"
 129     )
 130   SET(GDCM_DATA_SEQ_IMAGES_GLOB
 131     ${GDCM_DATA_SEQ_IMAGES_GLOB_DCM} ${GDCM_DATA_SEQ_IMAGES_GLOB_ACR}
 132     ${GDCM_DATA_SEQ_IMAGES_GLOB_NEMA} ${GDCM_DATA_SEQ_IMAGES_GLOB_IMA})
 133 ENDIF(${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION} GREATER 1.9)
 134
 135 # Black list of images known to break lots of readers (efilm, xmedcon ...):
 136 SET(BLACK_LIST
 137   # serial killer (also segfaults vtkgdcmViewer, but NOT PrintFile)
 138   "gdcm-JPEG-LossLessThoravision.dcm"
 139
 140   # Mathieu: temporarily remove as it kills my gnome session (but not kde)
 141   # JPR: also breaks TestReadWriteReadCompare : Pixel differ (as expanded
 142   #      in memory)
 143   "KODAK-12-MONO1-Odd_Terminated_Sequence.dcm"
 144   )
 145
 146 # This is a GLOB expression, change it into a list separated with a comma and \n
 147 SET(GDCM_DATA_IMAGES)
 148 FOREACH(filename ${GDCM_DATA_IMAGES_GLOB})
 149   GET_FILENAME_COMPONENT(filename_temp ${filename} NAME)
 150   STRING(REGEX MATCH ${filename_temp} bad_dicom ${BLACK_LIST})
 151   IF(NOT bad_dicom)
 152     SET(GDCM_DATA_IMAGES "${GDCM_DATA_IMAGES}\n\"${filename_temp}\",")
 153   ENDIF(NOT bad_dicom)
 154 ENDFOREACH(filename)
 155
 156 SET(GDCM_DATA_SEQ_IMAGES)
 157 FOREACH(filename ${GDCM_DATA_SEQ_IMAGES_GLOB})
 158   GET_FILENAME_COMPONENT(filename_temp ${filename} NAME)
 159   STRING(REGEX MATCH ${filename_temp} bad_dicom ${BLACK_LIST})
 160   IF(NOT bad_dicom)
 161     STRING(REGEX REPLACE "(.*)FileSeq0(.*)" "\\1FileSeq%d\\2" filename_temp2 ${filename_temp})
 162
 163     SET(GDCM_DATA_SEQ_IMAGES "${GDCM_DATA_SEQ_IMAGES}\n\"${filename_temp2}\",")
 164   ENDIF(NOT bad_dicom)
 165 ENDFOREACH(filename)
 166
 167 # Populate GDCM_DATA_IMAGES:
 168 FILE(WRITE "${GDCM_BINARY_DIR}/gdcmDataImages.h"
 169   "const char * const gdcmDataImages[] = { ${GDCM_DATA_IMAGES}\n0 };\n"
 170   )
 171
 172 # Populate GDCM_DATA_SEQ_IMAGES:
 173 FILE(WRITE "${GDCM_BINARY_DIR}/gdcmDataSeqImages.h"
 174   "const char * const gdcmDataSeqImages[] = { ${GDCM_DATA_SEQ_IMAGES}\n0 };\n"
 175   )