Testing/CMakeLists.txt

   1 # CMakeLists for Testing purpose
   2 # Cxx file that need a file to run should be place aproprietly
   3
   4 SET(CXX_TEST_PATH ${EXECUTABLE_OUTPUT_PATH})
   5
   6 SET(GDCM_TESTS ${CXX_TEST_PATH}/gdcmTests)
   7
   8 # add test that does not require data:
   9 # They usally return if no argument is given
  10 SET(TEST_SOURCES
  11   TestUtil.cxx
  12   TestBug.cxx
  13   TestHash.cxx
  14   TestTS.cxx
  15   TestVR.cxx
  16   TestDicomDirElement.cxx
  17   TestDicomString.cxx
  18   TestDict.cxx
  19   TestWriteSimple.cxx
  20 )
  21
  22 # add tests that require data
  23 IF (GDCM_DATA_ROOT)
  24   SET(TEST_SOURCES ${TEST_SOURCES}
  25     TestFileAccessors.cxx
  26     TestReadWriteReadCompare.cxx     # includes generated gdcmDataImages.h
  27     TestPrintAllDocument.cxx         # includes generated gdcmDataImages.h
  28     TestAllReadCompareDicom.cxx      # includes generated gdcmDataImages.h
  29     TestAllEntryVerify.cxx           # includes generated gdcmDataImages.h
  30     #TestChangeHeader.cxx
  31     TestCopyDicom.cxx                # includes generated gdcmDataImages.h
  32     TestCopyRescaleDicom.cxx         # includes generated gdcmDataImages.h
  33     TestDicomDir.cxx                 # require DICOMDIR
  34     TestBuildUpDicomDir.cxx          # writes a file named "NewDICOMDIR"
  35     TestMakeDicomDir.cxx             # writes a file named "NewDICOMDIR"
  36     TestDirList.cxx
  37     TestSerieHelper.cxx              # uses gdcmData as a default root directory
  38   )
  39   # add test that require VTK:
  40   IF(GDCM_VTK)
  41     # Include the VTK library
  42     INCLUDE(${VTK_USE_FILE})
  43
  44     INCLUDE_DIRECTORIES(
  45       ${GDCM_SOURCE_DIR}/vtk/
  46       )
  47     SET(TEST_SOURCES ${TEST_SOURCES}
  48       VTKTestRead.cxx
  49       VTKTestReadSeq.cxx
  50       VTKTestWrite.cxx
  51       )
  52   ENDIF(GDCM_VTK)
  53 ENDIF (GDCM_DATA_ROOT)
  54
  55
  56
  57 # include stuff
  58 INCLUDE_DIRECTORIES(
  59   ${GDCM_SOURCE_DIR}/src/
  60   ${GDCM_BINARY_DIR}/
  61 )
  62
  63 CREATE_TEST_SOURCELIST(Tests gdcmTests.cxx ${TEST_SOURCES})
  64 ADD_EXECUTABLE(gdcmTests ${Tests})
  65 IF(GDCM_VTK)
  66   TARGET_LINK_LIBRARIES(gdcmTests vtkgdcm vtkRendering)
  67 ELSE(GDCM_VTK)
  68   TARGET_LINK_LIBRARIES(gdcmTests gdcm)
  69 ENDIF(GDCM_VTK)
  70
  71 SET (TestsToRun ${Tests})
  72 REMOVE (TestsToRun gdcmTests.cxx)
  73
  74 # Loop over files and create executables
  75 FOREACH(file ${TEST_SOURCES})
  76   GET_FILENAME_COMPONENT(name ${file} NAME_WE)
  77 #  IF (GDCM_DATA_ROOT)
  78 #    ADD_TEST(${name} ${GDCM_TESTS} ${name}
  79 #        -D ${GDCM_DATA_ROOT}
  80 #        -T ${GDCM_BINARY_DIR}/Testing/Temporary
  81 #        -V Baseline/gdcm/${name}.png)
  82 #  ELSE (GDCM_DATA_ROOT)
  83     ADD_TEST(${name} ${GDCM_TESTS} ${name})
  84 #  ENDIF (GDCM_DATA_ROOT)
  85 ENDFOREACH(file ${TEST_SOURCES})
  86
  87 #-----------------------------------------------------------------------------
  88
  89 # We need to test the reading of all dicom images in the gdcmData directory
  90 # First parse this directory and extract all images
  91
  92 IF(${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION} GREATER 1.9)
  93   FILE(GLOB GDCM_DATA_IMAGES_GLOB
  94     "${GDCM_DATA_ROOT}/*.acr"
  95     "${GDCM_DATA_ROOT}/*.dcm"
  96     "${GDCM_DATA_ROOT}/*.nema"
  97     "${GDCM_DATA_ROOT}/*.ima"
  98     )
  99   FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB
 100     "${GDCM_DATA_ROOT}/*FileSeq0.acr"
 101     "${GDCM_DATA_ROOT}/*FileSeq0.dcm"
 102     "${GDCM_DATA_ROOT}/*FileSeq0.nema"
 103     "${GDCM_DATA_ROOT}/*FileSeq0.ima"
 104     )
 105 ELSE(${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION} GREATER 1.9)
 106   # Since there is a bug in cmake 1.8.3, I'll have to do two separate globs
 107   FILE(GLOB GDCM_DATA_IMAGES_GLOB_ACR
 108     "${GDCM_DATA_ROOT}/*.acr"
 109     )
 110   FILE(GLOB GDCM_DATA_IMAGES_GLOB_DCM
 111     "${GDCM_DATA_ROOT}/*.dcm"
 112     )
 113   FILE(GLOB GDCM_DATA_IMAGES_GLOB_NEMA
 114     "${GDCM_DATA_ROOT}/*.nema"
 115     )
 116   FILE(GLOB GDCM_DATA_IMAGES_GLOB_IMA
 117     "${GDCM_DATA_ROOT}/*.ima"
 118     )
 119   SET(GDCM_DATA_IMAGES_GLOB
 120     ${GDCM_DATA_IMAGES_GLOB_DCM} ${GDCM_DATA_IMAGES_GLOB_ACR}
 121     ${GDCM_DATA_IMAGES_GLOB_NEMA} ${GDCM_DATA_IMAGES_GLOB_IMA})
 122
 123   FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB_ACR
 124     "${GDCM_DATA_ROOT}/*FileSeq0.acr"
 125     )
 126   FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB_DCM
 127     "${GDCM_DATA_ROOT}/*FileSeq0.dcm"
 128     )
 129   FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB_NEMA
 130     "${GDCM_DATA_ROOT}/*FileSeq0.nema"
 131     )
 132   FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB_IMA
 133     "${GDCM_DATA_ROOT}/*FileSeq0.ima"
 134     )
 135   SET(GDCM_DATA_SEQ_IMAGES_GLOB
 136     ${GDCM_DATA_SEQ_IMAGES_GLOB_DCM} ${GDCM_DATA_SEQ_IMAGES_GLOB_ACR}
 137     ${GDCM_DATA_SEQ_IMAGES_GLOB_NEMA} ${GDCM_DATA_SEQ_IMAGES_GLOB_IMA})
 138 ENDIF(${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION} GREATER 1.9)
 139
 140 # Black list of images known to break lots of readers (efilm, xmedcon ...):
 141 SET(BLACK_LIST
 142
 143   # Multiframe Papyrus format image
 144   # Just to remember this format exists, and is gdcm::File compliant
 145   # (NOT gdcm::FileHelper ...)
 146   # any contribution is welcome
 147   "PET-cardio-Multiframe-Papyrus.dcm"
 148   # From David Clunie's Compresion Dataset
 149   "D_CLUNIE_CT1_JLSN.dcm"
 150   "D_CLUNIE_CT1_JLSL.dcm"
 151   "D_CLUNIE_CT1_J2KR.dcm"
 152   "D_CLUNIE_CT1_J2KI.dcm"
 153   )
 154
 155 # Add a special test that requires dciodvfy from dicom3tools
 156 INCLUDE(${GDCM_SOURCE_DIR}/CMake/FindDicom3Tools.cmake)
 157
 158 # This is a GLOB expression, change it into a list separated with a comma and \n
 159 SET(GDCM_DATA_IMAGES)
 160 FOREACH(filename ${GDCM_DATA_IMAGES_GLOB})
 161   GET_FILENAME_COMPONENT(filename_temp ${filename} NAME)
 162   IF(DCIODVFY_FOUND)
 163     ADD_TEST("Clunie-${filename_temp}" "${DCIODVFY_EXECUTABLE}" "${filename}")
 164   ENDIF(DCIODVFY_FOUND)
 165   STRING(REGEX MATCH ${filename_temp} bad_dicom ${BLACK_LIST})
 166   IF(NOT bad_dicom)
 167     SET(GDCM_DATA_IMAGES "${GDCM_DATA_IMAGES}\n\"${filename_temp}\",")
 168   ENDIF(NOT bad_dicom)
 169 ENDFOREACH(filename)
 170
 171 SET(GDCM_DATA_SEQ_IMAGES)
 172 FOREACH(filename ${GDCM_DATA_SEQ_IMAGES_GLOB})
 173   GET_FILENAME_COMPONENT(filename_temp ${filename} NAME)
 174   STRING(REGEX MATCH ${filename_temp} bad_dicom ${BLACK_LIST})
 175   IF(NOT bad_dicom)
 176     STRING(REGEX REPLACE "(.*)FileSeq0(.*)" "\\1FileSeq%d\\2" filename_temp2 ${filename_temp})
 177
 178     SET(GDCM_DATA_SEQ_IMAGES "${GDCM_DATA_SEQ_IMAGES}\n\"${filename_temp2}\",")
 179   ENDIF(NOT bad_dicom)
 180 ENDFOREACH(filename)
 181
 182 # Populate GDCM_DATA_IMAGES:
 183 FILE(WRITE "${GDCM_BINARY_DIR}/gdcmDataImages.h"
 184   "const char * const gdcmDataImages[] = { ${GDCM_DATA_IMAGES}\n0 };\n"
 185   )
 186
 187 # Populate GDCM_DATA_SEQ_IMAGES:
 188 FILE(WRITE "${GDCM_BINARY_DIR}/gdcmDataSeqImages.h"
 189   "const char * const gdcmDataSeqImages[] = { ${GDCM_DATA_SEQ_IMAGES}\n0 };\n"
 190   )