Testing/CMakeLists.txt

   1 # CMakeLists for Testing purpose
   2 # Cxx file that need a file to run should be place aproprietly
   3
   4 SET(CXX_TEST_PATH ${EXECUTABLE_OUTPUT_PATH})
   5
   6 SET(GDCM_TESTS ${CXX_TEST_PATH}/gdcmTests)
   7
   8 # add test that does not require data:
   9 # They usally return if no argument is given
  10 SET(TEST_SOURCES
  11   TestBug.cxx
  12   TestHash.cxx
  13 )
  14
  15 # add tests that require data
  16 IF (GDCM_DATA_ROOT)
  17   SET(TEST_SOURCES ${TEST_SOURCES}
  18     TestReadWriteReadCompare.cxx     # includes generated gdcmDataImages.h
  19     PrintAllDocument.cxx             # includes generated gdcmDataImages.h
  20     TestAllReadCompareDicom.cxx      # includes generated gdcmDataImages.h
  21     TestAllEntryVerify.cxx           # includes generated gdcmDataImages.h
  22     PrintDicomDir.cxx
  23     #TestChangeHeader.cxx
  24     TestDicomDir.cxx                 # require DICOMDIR
  25     BuildUpDicomDir.cxx              # writes a file named "NewDICOMDIR"
  26     makeDicomDir.cxx                 # writes a file named "NewDICOMDIR"
  27     TestCopyDicom.cxx
  28   )
  29   # add test that require VTK:
  30   IF(GDCM_VTK)
  31     INCLUDE_DIRECTORIES(
  32       ${GDCM_SOURCE_DIR}/vtk/
  33       )
  34     SET(TEST_SOURCES ${TEST_SOURCES}
  35       ShowDicom.cxx
  36       )
  37   ENDIF(GDCM_VTK)
  38 ENDIF (GDCM_DATA_ROOT)
  39
  40
  41
  42 # include stuff
  43 INCLUDE_DIRECTORIES(
  44   ${GDCM_SOURCE_DIR}/src/
  45   ${GDCM_BINARY_DIR}/
  46 )
  47
  48 CREATE_TEST_SOURCELIST(Tests gdcmTests.cxx ${TEST_SOURCES})
  49 ADD_EXECUTABLE(gdcmTests ${Tests})
  50 IF(GDCM_VTK)
  51   TARGET_LINK_LIBRARIES(gdcmTests vtkgdcm vtkRendering)
  52 ELSE(GDCM_VTK)
  53   TARGET_LINK_LIBRARIES(gdcmTests gdcm)
  54 ENDIF(GDCM_VTK)
  55
  56 SET (TestsToRun ${Tests})
  57 REMOVE (TestsToRun gdcmTests.cxx)
  58
  59 # Loop over files and create executables
  60 FOREACH(file ${TEST_SOURCES})
  61   GET_FILENAME_COMPONENT(name ${file} NAME_WE)
  62 #  IF (GDCM_DATA_ROOT)
  63 #    ADD_TEST(${name} ${GDCM_TESTS} ${name}
  64 #        -D ${GDCM_DATA_ROOT}
  65 #        -T ${GDCM_BINARY_DIR}/Testing/Temporary
  66 #        -V Baseline/gdcm/${name}.png)
  67 #  ELSE (GDCM_DATA_ROOT)
  68     ADD_TEST(${name} ${GDCM_TESTS} ${name})
  69 #  ENDIF (GDCM_DATA_ROOT)
  70 ENDFOREACH(file ${TEST_SOURCES})
  71
  72 #-----------------------------------------------------------------------------
  73
  74 # We need to test the reading of all dicom images in the gdcmData directory
  75 # First parse this directory and extract all images
  76
  77 IF(${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION} GREATER 1.9)
  78   FILE(GLOB GDCM_DATA_IMAGES_GLOB
  79     "${GDCM_DATA_ROOT}/*.acr"
  80     "${GDCM_DATA_ROOT}/*.dcm"
  81     "${GDCM_DATA_ROOT}/*.nema"
  82     "${GDCM_DATA_ROOT}/*.ima"
  83     )
  84 ELSE(${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION} GREATER 1.9)
  85   # Since there is a bug in cmake 1.8.3, I'll have to do two separate globs
  86   FILE(GLOB GDCM_DATA_IMAGES_GLOB_ACR
  87     "${GDCM_DATA_ROOT}/*.acr"
  88     )
  89   FILE(GLOB GDCM_DATA_IMAGES_GLOB_DCM
  90     "${GDCM_DATA_ROOT}/*.dcm"
  91     )
  92   FILE(GLOB GDCM_DATA_IMAGES_GLOB_NEMA
  93     "${GDCM_DATA_ROOT}/*.nema"
  94     )
  95   FILE(GLOB GDCM_DATA_IMAGES_GLOB_IMA
  96     "${GDCM_DATA_ROOT}/*.ima"
  97     )
  98   SET(GDCM_DATA_IMAGES_GLOB
  99     ${GDCM_DATA_IMAGES_GLOB_DCM} ${GDCM_DATA_IMAGES_GLOB_ACR}
 100     ${GDCM_DATA_IMAGES_GLOB_NEMA} ${GDCM_DATA_IMAGES_GLOB_IMA})
 101   #SET(GDCM_DATA_IMAGES_GLOB  ${GDCM_DATA_IMAGES_GLOB_ACR})
 102 ENDIF(${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION} GREATER 1.9)
 103
 104 # Black list of images known to break lots of readers (efilm, xmedcon ...):
 105 SET(BLACK_LIST
 106   # serial killer (also segfaults vtkgdcmViewer, but NOT PrintFile)
 107   "gdcm-JPEG-LossLessThoravision.dcm"
 108
 109   # Mathieu: temporarily remove as it kills my gnome session (but not kde)
 110   # JPR: also breaks TestReadWriteReadCompare : Pixel differ (as expanded
 111   #      in memory)
 112   "KODAK-12-MONO1-Odd_Terminated_Sequence.dcm"
 113
 114   #segfaults TestReadWriteReadCompare (same pb as below) --> Fixed
 115   #segfaults ShowDicom
 116   "gdcm-MR-SIEMENS-16-1.acr"
 117
 118   #Break ShowDicom
 119   "TestReadWriteReadCompare.dcm"
 120
 121   # see comments in gdcmData ref file TestAllEntryVerifyReference.txt
 122   # JPR 2004/20/09: doesn't break TestReadWriteReadCompare anymore
 123   #"SIEMENS_GBS_III-16-ACR_NEMA_1.acr"
 124
 125   # Frog 2004/07/29: segfaults TestReadWriteReadCompare (pixels not
 126   #                  parsed properly):
 127   # JPR 2004/20/09: doesn't break TestReadWriteReadCompare anymore
 128   #    "GE_DLX-8-MONO2-Multiframe-Jpeg_Lossless.dcm"
 129
 130   # JPR 2004/20/09: doesn't break TestReadWriteReadCompare anymore
 131   #"PICKER-16-MONO2-Nested_icon.dcm"
 132
 133   # JPR 2004/20/09: doesn't break TestReadWriteReadCompare anymore
 134   #"SIEMENS_Sonata-16-MONO2-Value_Multiplicity.dcm"
 135
 136   # JPR 2004/20/09: doesn't break TestReadWriteReadCompare anymore
 137   # Fails on TestAllReadCompareDicom at the RE-reading stage with message:
 138   #    Big trouble : Pixel Element (7fe0,10) NOT found
 139   # The temporary file GDCMDATAHOME/BaselineDicom/SIEMENS_Sonata-12-MONO2-SQ.dcm
 140   # stops after the first binEntry (binary entry) as can be seen with
 141   #   " gdcmbin/bin/PrintHeader
 142   #         GDCMDATAHOME/BaselineDicom/SIEMENS_Sonata-12-MONO2-SQ.dcm "
 143   # and effectively the pixels are missing (as well as all the entries
 144   # after tag 0029|1010)
 145   # Note: this file was previously known as E00001S03I0015.dcm
 146   #"SIEMENS_Sonata-12-MONO2-SQ.dcm"
 147
 148   # JPR 2004/20/09: doesn't break TestReadWriteReadCompare anymore
 149   # As of 14/09 this image creates a crash:
 150   # Program received signal SIGSEGV, Segmentation fault.
 151   #    0x4032bc4b in gdcmHeader::GetLUTRGBA (this=0x8149228)
 152   #    at /home/malaterre/Creatis/gdcm/src/gdcmHeader.cxx:1170
 153   #    1170          *a = lutR[i*mult+1];
 154   #"OT-PAL-8-face.dcm"
 155
 156   # Files which won't break the test suite but whose png dump looks ugly.
 157   # JPR: png looks ugly. so What ? ctest compliant --> un-black listed
 158   #   "THERALYS-12-MONO2-Uncompressed-E_Film_Template.dcm"
 159   #   "PHILIPS_Gyroscan-8-MONO2-Odd_Sequence.dcm"
 160   #   "PHILIPS_Gyroscan-12-MONO2-Jpeg_Lossless.dcm"
 161
 162   )
 163
 164
 165 # This is a GLOB expression, change it into a list separated with a comma and \n
 166 SET(GDCM_DATA_IMAGES)
 167 FOREACH(filename ${GDCM_DATA_IMAGES_GLOB})
 168   GET_FILENAME_COMPONENT(filename_temp ${filename} NAME)
 169   STRING(REGEX MATCH ${filename_temp} bad_dicom ${BLACK_LIST})
 170   IF(NOT bad_dicom)
 171     SET(GDCM_DATA_IMAGES "${GDCM_DATA_IMAGES}\n\"${filename_temp}\",")
 172   ENDIF(NOT bad_dicom)
 173 ENDFOREACH(filename)
 174
 175 # Populate GDCM_DATA_IMAGES:
 176 FILE(WRITE "${GDCM_BINARY_DIR}/gdcmDataImages.h"
 177   "const char * const gdcmDataImages[] = { ${GDCM_DATA_IMAGES}\n0 };\n"
 178   )