Testing/CMakeLists.txt

   1 # CMakeLists for Testing purpose
   2 # Cxx file that need a file to run should be place aproprietly
   3
   4 SET(CXX_TEST_PATH ${EXECUTABLE_OUTPUT_PATH})
   5
   6 SET(GDCM_TESTS ${CXX_TEST_PATH}/gdcmTests)
   7
   8 # add test that does not require data:
   9 # They usally return if no argument is given
  10 SET(TEST_SOURCES
  11   TestUtil.cxx
  12   TestBug.cxx
  13   TestHash.cxx
  14   TestTS.cxx
  15   TestVR.cxx
  16   TestDict.cxx
  17   TestWriteSimple.cxx
  18   TestSequence.cxx
  19   TestDicomDirElement.cxx
  20   TestDicomString.cxx
  21 )
  22
  23 # add tests that require data
  24 IF (GDCM_DATA_ROOT)
  25   SET(TEST_SOURCES ${TEST_SOURCES}
  26     TestFileAccessors.cxx
  27     TestMakeIcon.cxx
  28     TestPrintAllDocument.cxx         # includes generated gdcmDataImages.h
  29     TestAllEntryVerify.cxx           # includes generated gdcmDataImages.h
  30     TestAllReadCompareDicom.cxx      # includes generated gdcmDataImages.h
  31     TestReadWriteReadCompare.cxx     # includes generated gdcmDataImages.h
  32     #TestCopyDicom.cxx                # includes generated gdcmDataImages.h
  33     TestCopyRescaleDicom.cxx         # includes generated gdcmDataImages.h
  34     #TestChangeHeader.cxx
  35     TestAnonymize.cxx
  36     TestDirList.cxx
  37     TestDicomDir.cxx                 # require DICOMDIR
  38     TestBuildUpDicomDir.cxx          # writes a file named "NewDICOMDIR"
  39     TestMakeDicomDir.cxx             # writes a file named "NewDICOMDIR"
  40     TestSerieHelper.cxx              # uses gdcmData as a default root directory
  41   )
  42   # add test that require VTK:
  43   IF(GDCM_VTK)
  44     # Include the VTK library
  45     INCLUDE(${VTK_USE_FILE})
  46
  47     INCLUDE_DIRECTORIES(
  48       ${GDCM_SOURCE_DIR}/vtk/
  49     )
  50     SET(TEST_SOURCES ${TEST_SOURCES}
  51       VTKTestRead.cxx
  52       VTKTestReadSeq.cxx
  53       VTKTestWrite.cxx
  54       VTKTestWriteSeq.cxx
  55     )
  56   ENDIF(GDCM_VTK)
  57 ENDIF (GDCM_DATA_ROOT)
  58
  59
  60
  61 # include stuff
  62 INCLUDE_DIRECTORIES(
  63   ${GDCM_SOURCE_DIR}/src/
  64   ${GDCM_BINARY_DIR}/
  65 )
  66
  67 CREATE_TEST_SOURCELIST(Tests gdcmTests.cxx ${TEST_SOURCES})
  68 ADD_EXECUTABLE(gdcmTests ${Tests})
  69 IF(GDCM_VTK)
  70   TARGET_LINK_LIBRARIES(gdcmTests vtkgdcm vtkRendering)
  71 ELSE(GDCM_VTK)
  72   TARGET_LINK_LIBRARIES(gdcmTests gdcm)
  73 ENDIF(GDCM_VTK)
  74
  75 SET (TestsToRun ${Tests})
  76 REMOVE (TestsToRun gdcmTests.cxx)
  77
  78 # Loop over files and create executables
  79 FOREACH(file ${TEST_SOURCES})
  80   GET_FILENAME_COMPONENT(name ${file} NAME_WE)
  81   ADD_TEST(${name} ${GDCM_TESTS} ${name})
  82 ENDFOREACH(file ${TEST_SOURCES})
  83
  84 #-----------------------------------------------------------------------------
  85
  86 # We need to test the reading of all dicom images in the gdcmData directory
  87 # First parse this directory and extract all images
  88
  89 IF(${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION} GREATER 1.9)
  90   FILE(GLOB GDCM_DATA_IMAGES_GLOB
  91     "${GDCM_DATA_ROOT}/*.acr"
  92     "${GDCM_DATA_ROOT}/*.dcm"
  93     "${GDCM_DATA_ROOT}/*.nema"
  94     "${GDCM_DATA_ROOT}/*.ima"
  95     )
  96   FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB
  97     "${GDCM_DATA_ROOT}/*FileSeq0.acr"
  98     "${GDCM_DATA_ROOT}/*FileSeq0.dcm"
  99     "${GDCM_DATA_ROOT}/*FileSeq0.nema"
 100     "${GDCM_DATA_ROOT}/*FileSeq0.ima"
 101     )
 102 ELSE(${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION} GREATER 1.9)
 103   # Since there is a bug in cmake 1.8.3, I'll have to do two separate globs
 104   FILE(GLOB GDCM_DATA_IMAGES_GLOB_ACR
 105     "${GDCM_DATA_ROOT}/*.acr"
 106     )
 107   FILE(GLOB GDCM_DATA_IMAGES_GLOB_DCM
 108     "${GDCM_DATA_ROOT}/*.dcm"
 109     )
 110   FILE(GLOB GDCM_DATA_IMAGES_GLOB_NEMA
 111     "${GDCM_DATA_ROOT}/*.nema"
 112     )
 113   FILE(GLOB GDCM_DATA_IMAGES_GLOB_IMA
 114     "${GDCM_DATA_ROOT}/*.ima"
 115     )
 116   SET(GDCM_DATA_IMAGES_GLOB
 117     ${GDCM_DATA_IMAGES_GLOB_DCM} ${GDCM_DATA_IMAGES_GLOB_ACR}
 118     ${GDCM_DATA_IMAGES_GLOB_NEMA} ${GDCM_DATA_IMAGES_GLOB_IMA})
 119
 120   FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB_ACR
 121     "${GDCM_DATA_ROOT}/*FileSeq0.acr"
 122     )
 123   FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB_DCM
 124     "${GDCM_DATA_ROOT}/*FileSeq0.dcm"
 125     )
 126   FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB_NEMA
 127     "${GDCM_DATA_ROOT}/*FileSeq0.nema"
 128     )
 129   FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB_IMA
 130     "${GDCM_DATA_ROOT}/*FileSeq0.ima"
 131     )
 132   SET(GDCM_DATA_SEQ_IMAGES_GLOB
 133     ${GDCM_DATA_SEQ_IMAGES_GLOB_DCM} ${GDCM_DATA_SEQ_IMAGES_GLOB_ACR}
 134     ${GDCM_DATA_SEQ_IMAGES_GLOB_NEMA} ${GDCM_DATA_SEQ_IMAGES_GLOB_IMA})
 135 ENDIF(${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION} GREATER 1.9)
 136
 137 # Black list of images known to break lots of readers (efilm, xmedcon ...):
 138 SET(BLACK_LIST
 139
 140   # Multiframe Papyrus format image
 141   # Just to remember this format exists, and is gdcm::File compliant
 142   # (NOT gdcm::FileHelper ...)
 143   # any contribution is welcome
 144   "PET-cardio-Multiframe-Papyrus.dcm"
 145   # From David Clunie's Compresion Dataset
 146   "D_CLUNIE_CT1_JLSN.dcm"
 147   "D_CLUNIE_CT1_JLSL.dcm"
 148   "D_CLUNIE_CT1_J2KR.dcm"
 149   "D_CLUNIE_CT1_J2KI.dcm"
 150   )
 151
 152 # Add a special test that requires dciodvfy from dicom3tools
 153 INCLUDE(${GDCM_SOURCE_DIR}/CMake/FindDicom3Tools.cmake)
 154
 155 # This is a GLOB expression, change it into a list separated with a comma and \n
 156 SET(GDCM_DATA_IMAGES)
 157 FOREACH(filename ${GDCM_DATA_IMAGES_GLOB})
 158   GET_FILENAME_COMPONENT(filename_temp ${filename} NAME)
 159   IF(DCIODVFY_FOUND)
 160     ADD_TEST("Clunie-${filename_temp}" "${DCIODVFY_EXECUTABLE}" "${filename}")
 161   ENDIF(DCIODVFY_FOUND)
 162   STRING(REGEX MATCH ${filename_temp} bad_dicom ${BLACK_LIST})
 163   IF(NOT bad_dicom)
 164     SET(GDCM_DATA_IMAGES "${GDCM_DATA_IMAGES}\n\"${filename_temp}\",")
 165   ENDIF(NOT bad_dicom)
 166 ENDFOREACH(filename)
 167
 168 SET(GDCM_DATA_SEQ_IMAGES)
 169 FOREACH(filename ${GDCM_DATA_SEQ_IMAGES_GLOB})
 170   GET_FILENAME_COMPONENT(filename_temp ${filename} NAME)
 171   STRING(REGEX MATCH ${filename_temp} bad_dicom ${BLACK_LIST})
 172   IF(NOT bad_dicom)
 173     STRING(REGEX REPLACE "(.*)FileSeq0(.*)" "\\1FileSeq%d\\2" filename_temp2 ${filename_temp})
 174
 175     SET(GDCM_DATA_SEQ_IMAGES "${GDCM_DATA_SEQ_IMAGES}\n\"${filename_temp2}\",")
 176   ENDIF(NOT bad_dicom)
 177 ENDFOREACH(filename)
 178
 179 # Populate GDCM_DATA_IMAGES:
 180 FILE(WRITE "${GDCM_BINARY_DIR}/gdcmDataImages.h"
 181   "const char * const gdcmDataImages[] = { ${GDCM_DATA_IMAGES}\n0 };\n"
 182 )
 183
 184 # Populate GDCM_DATA_SEQ_IMAGES:
 185 FILE(WRITE "${GDCM_BINARY_DIR}/gdcmDataSeqImages.h"
 186   "const char * const gdcmDataSeqImages[] = { ${GDCM_DATA_SEQ_IMAGES}\n0 };\n"
 187 )