Testing/CMakeLists.txt

   1 # CMakeLists for Testing purpose
   2 # Cxx file that need a file to run should be place aproprietly
   3
   4 SET(CXX_TEST_PATH ${EXECUTABLE_OUTPUT_PATH})
   5
   6 SET(GDCM_TESTS ${CXX_TEST_PATH}/gdcmTests)
   7
   8 # add test that does not require data:
   9 # They usally return if no argument is given
  10 SET(TEST_SOURCES
  11   TestUtil.cxx
  12   TestBug.cxx
  13   TestHash.cxx
  14   TestTS.cxx
  15   TestVR.cxx
  16   TestDict.cxx
  17   TestWriteSimple.cxx
  18   TestSequence.cxx
  19   TestDicomDirElement.cxx
  20   TestDicomString.cxx
  21 )
  22
  23 # add tests that require data
  24 IF (GDCM_DATA_ROOT)
  25   SET(TEST_SOURCES ${TEST_SOURCES}
  26     TestFileAccessors.cxx
  27     TestPrintAllDocument.cxx         # includes generated gdcmDataImages.h
  28     TestAllEntryVerify.cxx           # includes generated gdcmDataImages.h
  29     TestAllReadCompareDicom.cxx      # includes generated gdcmDataImages.h
  30     TestReadWriteReadCompare.cxx     # includes generated gdcmDataImages.h
  31     #TestCopyDicom.cxx                # includes generated gdcmDataImages.h
  32     TestCopyRescaleDicom.cxx         # includes generated gdcmDataImages.h
  33     #TestChangeHeader.cxx
  34     TestDirList.cxx
  35     TestDicomDir.cxx                 # require DICOMDIR
  36     TestBuildUpDicomDir.cxx          # writes a file named "NewDICOMDIR"
  37     TestMakeDicomDir.cxx             # writes a file named "NewDICOMDIR"
  38     TestSerieHelper.cxx              # uses gdcmData as a default root directory
  39   )
  40   # add test that require VTK:
  41   IF(GDCM_VTK)
  42     # Include the VTK library
  43     INCLUDE(${VTK_USE_FILE})
  44
  45     INCLUDE_DIRECTORIES(
  46       ${GDCM_SOURCE_DIR}/vtk/
  47     )
  48     SET(TEST_SOURCES ${TEST_SOURCES}
  49       VTKTestRead.cxx
  50       VTKTestReadSeq.cxx
  51       VTKTestWrite.cxx
  52       VTKTestWriteSeq.cxx
  53     )
  54   ENDIF(GDCM_VTK)
  55 ENDIF (GDCM_DATA_ROOT)
  56
  57
  58
  59 # include stuff
  60 INCLUDE_DIRECTORIES(
  61   ${GDCM_SOURCE_DIR}/src/
  62   ${GDCM_BINARY_DIR}/
  63 )
  64
  65 CREATE_TEST_SOURCELIST(Tests gdcmTests.cxx ${TEST_SOURCES})
  66 ADD_EXECUTABLE(gdcmTests ${Tests})
  67 IF(GDCM_VTK)
  68   TARGET_LINK_LIBRARIES(gdcmTests vtkgdcm vtkRendering)
  69 ELSE(GDCM_VTK)
  70   TARGET_LINK_LIBRARIES(gdcmTests gdcm)
  71 ENDIF(GDCM_VTK)
  72
  73 SET (TestsToRun ${Tests})
  74 REMOVE (TestsToRun gdcmTests.cxx)
  75
  76 # Loop over files and create executables
  77 FOREACH(file ${TEST_SOURCES})
  78   GET_FILENAME_COMPONENT(name ${file} NAME_WE)
  79   ADD_TEST(${name} ${GDCM_TESTS} ${name})
  80 ENDFOREACH(file ${TEST_SOURCES})
  81
  82 #-----------------------------------------------------------------------------
  83
  84 # We need to test the reading of all dicom images in the gdcmData directory
  85 # First parse this directory and extract all images
  86
  87 IF(${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION} GREATER 1.9)
  88   FILE(GLOB GDCM_DATA_IMAGES_GLOB
  89     "${GDCM_DATA_ROOT}/*.acr"
  90     "${GDCM_DATA_ROOT}/*.dcm"
  91     "${GDCM_DATA_ROOT}/*.nema"
  92     "${GDCM_DATA_ROOT}/*.ima"
  93     )
  94   FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB
  95     "${GDCM_DATA_ROOT}/*FileSeq0.acr"
  96     "${GDCM_DATA_ROOT}/*FileSeq0.dcm"
  97     "${GDCM_DATA_ROOT}/*FileSeq0.nema"
  98     "${GDCM_DATA_ROOT}/*FileSeq0.ima"
  99     )
 100 ELSE(${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION} GREATER 1.9)
 101   # Since there is a bug in cmake 1.8.3, I'll have to do two separate globs
 102   FILE(GLOB GDCM_DATA_IMAGES_GLOB_ACR
 103     "${GDCM_DATA_ROOT}/*.acr"
 104     )
 105   FILE(GLOB GDCM_DATA_IMAGES_GLOB_DCM
 106     "${GDCM_DATA_ROOT}/*.dcm"
 107     )
 108   FILE(GLOB GDCM_DATA_IMAGES_GLOB_NEMA
 109     "${GDCM_DATA_ROOT}/*.nema"
 110     )
 111   FILE(GLOB GDCM_DATA_IMAGES_GLOB_IMA
 112     "${GDCM_DATA_ROOT}/*.ima"
 113     )
 114   SET(GDCM_DATA_IMAGES_GLOB
 115     ${GDCM_DATA_IMAGES_GLOB_DCM} ${GDCM_DATA_IMAGES_GLOB_ACR}
 116     ${GDCM_DATA_IMAGES_GLOB_NEMA} ${GDCM_DATA_IMAGES_GLOB_IMA})
 117
 118   FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB_ACR
 119     "${GDCM_DATA_ROOT}/*FileSeq0.acr"
 120     )
 121   FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB_DCM
 122     "${GDCM_DATA_ROOT}/*FileSeq0.dcm"
 123     )
 124   FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB_NEMA
 125     "${GDCM_DATA_ROOT}/*FileSeq0.nema"
 126     )
 127   FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB_IMA
 128     "${GDCM_DATA_ROOT}/*FileSeq0.ima"
 129     )
 130   SET(GDCM_DATA_SEQ_IMAGES_GLOB
 131     ${GDCM_DATA_SEQ_IMAGES_GLOB_DCM} ${GDCM_DATA_SEQ_IMAGES_GLOB_ACR}
 132     ${GDCM_DATA_SEQ_IMAGES_GLOB_NEMA} ${GDCM_DATA_SEQ_IMAGES_GLOB_IMA})
 133 ENDIF(${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION} GREATER 1.9)
 134
 135 # Black list of images known to break lots of readers (efilm, xmedcon ...):
 136 SET(BLACK_LIST
 137
 138   # Multiframe Papyrus format image
 139   # Just to remember this format exists, and is gdcm::File compliant
 140   # (NOT gdcm::FileHelper ...)
 141   # any contribution is welcome
 142   "PET-cardio-Multiframe-Papyrus.dcm"
 143   # From David Clunie's Compresion Dataset
 144   "D_CLUNIE_CT1_JLSN.dcm"
 145   "D_CLUNIE_CT1_JLSL.dcm"
 146   "D_CLUNIE_CT1_J2KR.dcm"
 147   "D_CLUNIE_CT1_J2KI.dcm"
 148   )
 149
 150 # Add a special test that requires dciodvfy from dicom3tools
 151 INCLUDE(${GDCM_SOURCE_DIR}/CMake/FindDicom3Tools.cmake)
 152
 153 # This is a GLOB expression, change it into a list separated with a comma and \n
 154 SET(GDCM_DATA_IMAGES)
 155 FOREACH(filename ${GDCM_DATA_IMAGES_GLOB})
 156   GET_FILENAME_COMPONENT(filename_temp ${filename} NAME)
 157   IF(DCIODVFY_FOUND)
 158     ADD_TEST("Clunie-${filename_temp}" "${DCIODVFY_EXECUTABLE}" "${filename}")
 159   ENDIF(DCIODVFY_FOUND)
 160   STRING(REGEX MATCH ${filename_temp} bad_dicom ${BLACK_LIST})
 161   IF(NOT bad_dicom)
 162     SET(GDCM_DATA_IMAGES "${GDCM_DATA_IMAGES}\n\"${filename_temp}\",")
 163   ENDIF(NOT bad_dicom)
 164 ENDFOREACH(filename)
 165
 166 SET(GDCM_DATA_SEQ_IMAGES)
 167 FOREACH(filename ${GDCM_DATA_SEQ_IMAGES_GLOB})
 168   GET_FILENAME_COMPONENT(filename_temp ${filename} NAME)
 169   STRING(REGEX MATCH ${filename_temp} bad_dicom ${BLACK_LIST})
 170   IF(NOT bad_dicom)
 171     STRING(REGEX REPLACE "(.*)FileSeq0(.*)" "\\1FileSeq%d\\2" filename_temp2 ${filename_temp})
 172
 173     SET(GDCM_DATA_SEQ_IMAGES "${GDCM_DATA_SEQ_IMAGES}\n\"${filename_temp2}\",")
 174   ENDIF(NOT bad_dicom)
 175 ENDFOREACH(filename)
 176
 177 # Populate GDCM_DATA_IMAGES:
 178 FILE(WRITE "${GDCM_BINARY_DIR}/gdcmDataImages.h"
 179   "const char * const gdcmDataImages[] = { ${GDCM_DATA_IMAGES}\n0 };\n"
 180 )
 181
 182 # Populate GDCM_DATA_SEQ_IMAGES:
 183 FILE(WRITE "${GDCM_BINARY_DIR}/gdcmDataSeqImages.h"
 184   "const char * const gdcmDataSeqImages[] = { ${GDCM_DATA_SEQ_IMAGES}\n0 };\n"
 185 )