1 /*=========================================================================
4 Module: $RCSfile: TestReadWriteJPEG2000ReadCompare.cxx,v $
6 Date: $Date: 2007/09/05 09:55:01 $
7 Version: $Revision: 1.6 $
9 Copyright (c) CREATIS (Centre de Recherche et d'Applications en Traitement de
10 l'Image). All rights reserved. See Doc/License.txt or
11 http://www.creatis.insa-lyon.fr/Public/Gdcm/License.html for details.
13 This software is distributed WITHOUT ANY WARRANTY; without even
14 the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15 PURPOSE. See the above copyright notices for more information.
17 =========================================================================*/
19 #include "gdcmFileHelper.h"
20 #include "gdcmDebug.h"
22 #include "gdcmGlobal.h"
26 #include "gdcmDataImages.h"
29 const unsigned int MAX_NUMBER_OF_DIFFERENCE = 10;
31 int nb_of_success2000___;
32 int nb_of_failure2000___;
33 int nb_of_diffPM12000___;
34 static int CompareInternalJPEG2000(std::string const &filename, std::string const &output)
36 std::cout << "----------------------------------------------------------------------" << std::endl
37 << " Testing: " << filename << std::endl;
39 //////////////// Step 1 (see above description):
41 GDCM_NAME_SPACE::File *file = GDCM_NAME_SPACE::File::New( );
42 file->SetFileName( filename );
44 if( !file->IsReadable() )
46 std::cout << "Failed" << std::endl
47 << "Test::TestReadWriteJPEG2000ReadCompare: Image not gdcm compatible:"
48 << filename << std::endl;
50 nb_of_failure2000___++;
53 std::cout << " step 1...";
55 //////////////// Step 2:
56 GDCM_NAME_SPACE::FileHelper *filehelper = GDCM_NAME_SPACE::FileHelper::New( file );
57 int dataSize = filehelper->GetImageDataRawSize();
58 uint8_t *imageData = filehelper->GetImageDataRaw(); //EXTREMELY IMPORTANT
59 // Sure, it is : It's up to the user to decide if he wants to
60 // GetImageData or if he wants to GetImageDataRaw
61 // (even if we do it by setting a flag, *he* will have to decide)
63 //filehelper->SetImageData(imageData, dataSize);
65 filehelper->SetContentType(GDCM_NAME_SPACE::UNMODIFIED_PIXELS_IMAGE); // lossless compression : pixels reain unimpared
66 filehelper->SetWriteModeToRaw();
67 filehelper->SetWriteTypeToJPEG2000( );
69 filehelper->SetUserData(imageData,dataSize); // This one ensures the compression
70 filehelper->Write( output );
74 //////////////// Step 3:
75 GDCM_NAME_SPACE::File *fileout = GDCM_NAME_SPACE::File::New();
76 fileout->SetFileName( output );
79 if( !fileout->IsReadable() )
81 std::cout << "Failed" << std::endl
82 << "Test::TestReadWriteJPEG2000ReadCompare: Could not parse the newly "
83 << "written image:" << filename << std::endl;
87 nb_of_failure2000___++;
91 if ( file->GetBitsAllocated()>16 )
93 std::cout << "=============== 32 bits, not checked...OK." << std::endl ;
94 //////////////// Clean up:
102 GDCM_NAME_SPACE::FileHelper *reread = GDCM_NAME_SPACE::FileHelper::New( fileout );
105 // For the next step:
106 int dataSizeWritten = reread->GetImageDataRawSize();
107 uint8_t *imageDataWritten = reread->GetImageDataRaw();
109 //////////////// Step 4:
110 // Test the image size
111 if (file->GetXSize() != reread->GetFile()->GetXSize() ||
112 file->GetYSize() != reread->GetFile()->GetYSize() ||
113 file->GetZSize() != reread->GetFile()->GetZSize())
115 std::cout << "Failed" << std::endl
117 << "X: " << file->GetXSize() << " # "
118 << reread->GetFile()->GetXSize() << " | "
119 << "Y: " << file->GetYSize() << " # "
120 << reread->GetFile()->GetYSize() << " | "
121 << "Z: " << file->GetZSize() << " # "
122 << reread->GetFile()->GetZSize() << std::endl;
124 filehelper->Delete();
127 nb_of_failure2000___++;
131 // Test the data size
132 // beware of odd length Pixel Element!
133 if (dataSize != dataSizeWritten)
134 std::cout << std::endl << "dataSize:" << dataSize << " dataSizeWritten:" << dataSizeWritten << std::endl;
136 int dataSizeFixed = dataSize - dataSize%2;
137 int dataSizeWrittenFixed = dataSizeWritten - dataSizeWritten%2;
139 if (dataSizeFixed != dataSizeWrittenFixed)
141 std::cout << "Failed" << std::endl
142 << " Pixel areas lengths differ: "
143 << dataSize << " # " << dataSizeWritten << std::endl;
145 filehelper->Delete();
148 nb_of_failure2000___++;
152 // Test the data content
155 unsigned int nbDiff =0;
156 if (memcmp(imageData, imageDataWritten, dataSizeFixed) !=0)
158 std::string PixelType = filehelper->GetFile()->GetPixelType();
159 std::string ts = filehelper->GetFile()->GetTransferSyntax();
161 for(int i1=0; i1<dataSizeFixed; i1++)
162 if (abs ((int)imageData[i1]-(int)imageDataWritten[i1]) > 2) {
164 // break; // at debug time, keep line commented out; (uncommenting will save CPU time)
169 std::cout << std::endl << filename << " Failed : "
170 << nbDiff/(file->GetBitsAllocated()/8) << " Pixels -amongst "
171 << dataSizeFixed/(file->GetBitsAllocated()/8) << "- ("
172 << PixelType << " bAlloc:" << file->GetBitsAllocated() << " bStored:" << file->GetBitsStored()
173 << ") differ (as expanded in memory)."
176 << GDCM_NAME_SPACE::Global::GetTS()->GetValue(ts) << std::endl;
178 std::cout << " list of the first " << MAX_NUMBER_OF_DIFFERENCE
179 << " bytes differing (pos : original - written) :"
182 for(int i=0, j=0; i<dataSizeFixed && j<MAX_NUMBER_OF_DIFFERENCE; i++)
184 if (abs ((int)imageData[i]-(int)imageDataWritten[i]) > 2)
186 if (j<MAX_NUMBER_OF_DIFFERENCE)
187 std::cout << std::dec << "(" << i << " : "
189 << (int)(imageData[i]) << " - "
190 << (int)(imageDataWritten[i]) << ") "
195 std::cout << std::endl;
198 filehelper->Delete();
201 nb_of_failure2000___++;
203 if (nbDiff/2 > 8 ) // last pixel of (DermaColorLossLess.dcm) is diferent. ?!?
204 // I don't want it to break the testsuite
211 std::cout << std::endl << filename << " : some pixels"
213 << PixelType << " bAlloc:" << file->GetBitsAllocated() << " bStored:" << file->GetBitsStored()
214 << ") differ +/-1 (as expanded in memory)."
217 << GDCM_NAME_SPACE::Global::GetTS()->GetValue(ts) << std::endl;
219 std::cout << " list of the first " << MAX_NUMBER_OF_DIFFERENCE
220 << " bytes differing (pos : original - written) :"
223 for(int i=0, j=0; i<dataSizeFixed && j<MAX_NUMBER_OF_DIFFERENCE; i++)
225 if (imageData[i] != imageDataWritten[i])
227 std::cout << std::hex << "(" << i << " : "
228 << std::hex << (int)(imageData[i]) << " - "
229 << std::hex << (int)(imageDataWritten[i]) << ") "
234 std::cout << std::endl;
235 nb_of_diffPM12000___++;
240 nb_of_success2000___ ++;
242 std::cout << "=============== 4...OK." << std::endl ;
243 //////////////// Clean up:
245 filehelper->Delete();
252 // -------------------------------------------------------------------------------------------
254 int TestReadWriteJPEG2000ReadCompare(int argc, char *argv[])
257 nb_of_success2000___ = 0;
258 nb_of_failure2000___ = 0;
259 nb_of_diffPM12000___ = 0;
262 GDCM_NAME_SPACE::Debug::DebugOn();
266 const std::string input = argv[1];
267 const std::string output = argv[2];
268 result += CompareInternalJPEG2000(input, output);
270 else if( argc > 4 || argc == 2 )
272 std::cout << "Please read the manual" << std::endl;
276 std::cout<< "Test::TestReadWriteJPEG2000ReadCompare: description " << std::endl;
277 std::cout << " For all images in gdcmData (and not blacklisted in "
278 "Test/CMakeLists.txt)" << std::endl;
279 std::cout << " apply the following multistep test: " << std::endl;
280 std::cout << " step 1: parse the image (as gdcmFile) and call"
281 << " IsReadable(). " << std::endl;
282 std::cout << " step 2: write the corresponding image in JPEG2000 DICOM V3 "
283 << "with explicit Value Representation " << std::endl
284 << " in temporary file "
285 << "TestReadWriteJPEG2000ReadCompare.dcm." << std::endl;
286 std::cout << " step 3: read the image written on step2 and call "
287 << " IsReadable(). " << std::endl;
288 std::cout << " step 4: compare (in memory with memcmp) that the two "
289 << "images " << std::endl
290 << " match (as expanded by gdcm)." << std::endl;
294 while( gdcmDataImages[i] != 0 )
296 std::string filename = GDCM_DATA_ROOT;
298 filename += gdcmDataImages[i];
299 res = CompareInternalJPEG2000(filename, "TestReadWriteJPEG2000ReadCompare.dcm");
303 std::cout << "=============================== Failure on: " << gdcmDataImages[i] << std::endl;
309 std::cout << "==================================" << std::endl;
310 std::cout << "nb of success " << nb_of_success2000___ << std::endl;
311 std::cout << "nb of failure " << nb_of_failure2000___ << std::endl;
312 std::cout << "nb of diff+/-1 " << nb_of_diffPM12000___ << std::endl;