appli/TempAirwaysAppli/AirwaysLib/airwaysTreeTypeDefinition.h

   1 /*
   2  * airwaysTreeTypeDefinition.h
   3  *
   4  *  Created on: May 19, 2014
   5  *      Author: caceres
   6  */
   7
   8 #ifndef AIRWAYSTREETYPEDEFINITION_H_
   9 #define AIRWAYSTREETYPEDEFINITION_H_
  10
  11 //std
  12 #include <vector>
  13 #include <queue>
  14 #include <cstddef>
  15 #include <utility>
  16 //boost
  17 #include <boost/graph/adjacency_list.hpp>
  18 //itk
  19 #include "itkImage.h"
  20 #include "itkConnectedComponentImageFilter.h"
  21 #include "itkConstNeighborhoodIterator.h"
  22 #include "itkImageDuplicator.h"
  23 #include "itkSphereSpatialFunction.h"
  24 #include "itkConnectedThresholdImageFilter.h"
  25 #include "itkSubtractImageFilter.h"
  26 #include "itkCastImageFilter.h"
  27 //airways
  28 #include "../MathLib/vec3.h"
  29 #include "airwaysNode.h"
  30 #include "airwaysEdge.h"
  31
  32 namespace airways
  33 {
  34         typedef std::pair<Vec3, double> pair_posVox_rad;
  35         typedef std::vector<pair_posVox_rad> vec_pair_posVox_rad;
  36
  37         /**
  38          * Pair of id nodes
  39          */
  40
  41
  42         /**
  43          * Pair of a pair of nodes and a score
  44          */
  45         //typedef std::pair<pair_node_node,double> Pair_PairNodes_Score;
  46
  47         //----------------------------------------------------------------------------
  48         /*
  49          * Typedef declaration
  50          */
  51         /**
  52          * @typedef Defines a graph using the Boost DiGraph library
  53          */
  54         typedef boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS,
  55                         pair_posVox_rad> DiGraph;
  56         //end typedef Graph
  57         //--------------------------------------------------------------------------
  58         /**
  59          * @typedef Defines boost::vertex_descriptor of DiGraph
  60          */
  61         typedef boost::graph_traits<DiGraph>::vertex_descriptor DiGraph_VertexDescriptor;
  62         //--------------------------------------------------------------------------
  63         ///DiGraph edge_descriptor
  64         typedef boost::graph_traits<DiGraph>::edge_descriptor DiGraph_EdgeDescriptor;
  65         //--------------------------------------------------------------------------
  66         ///DiGraph edge pair
  67         typedef std::pair<DiGraph_EdgeDescriptor, bool> DiGraph_EdgePair;
  68         //--------------------------------------------------------------------------
  69         ///DiGraph Vertex IndexMap
  70         typedef boost::property_map<DiGraph, boost::vertex_index_t>::type DiGraph_VertexIndexMap;
  71         //--------------------------------------------------------------------------
  72         ///DiGraph VertexIterator
  73         typedef boost::graph_traits<DiGraph>::vertex_iterator DiGraph_VertexIterator;
  74         //--------------------------------------------------------------------------
  75         ///DiGraph Vertex iterator pair
  76         typedef std::pair<DiGraph_VertexIterator, DiGraph_VertexIterator> DiGraph_VertexIteratorPair;
  77         //--------------------------------------------------------------------------
  78         ///DiGraph Edge iterator
  79         typedef boost::graph_traits<DiGraph>::edge_iterator DiGraph_EdgeIterator;
  80         //--------------------------------------------------------------------------
  81         ///DiGraph In Edge iterator
  82         typedef boost::graph_traits<DiGraph>::in_edge_iterator DiGraph_InEdgeIterator;
  83         //--------------------------------------------------------------------------
  84         ///DiGraph Out Edge iterator
  85         typedef boost::graph_traits<DiGraph>::out_edge_iterator DiGraph_OutEdgeIterator;
  86         //--------------------------------------------------------------------------
  87         ///DiGraph Adjacency iterator
  88         typedef boost::graph_traits<DiGraph>::adjacency_iterator DiGraph_AdjacencyIterator;
  89         //--------------------------------------------------------------------------
  90         ///DiGraph Vertex descriptor vector
  91         typedef std::vector<DiGraph_VertexDescriptor> DiGraph_VertexVector;
  92         //--------------------------------------------------------------------------
  93         ///DiGraph Vertex descriptor queue
  94         typedef std::queue<DiGraph_VertexDescriptor> DiGraph_VertexQueue;
  95         //--------------------------------------------------------------------------
  96         ///DiGraph Edge descriptor vector
  97         typedef std::vector<DiGraph_EdgeDescriptor> DiGraph_EdgeVector;
  98         //----------------------------------------------------------------------------
  99         const unsigned int Dim = 3;
 100         typedef double TPixel;
 101         typedef unsigned char TPixel2;
 102         typedef itk::Image<TPixel, Dim> TInputImage;
 103         typedef itk::Image<TPixel2, Dim> TInputImage2;
 104         typedef itk::Image<unsigned short, Dim> TInputImage3;
 105         //----------------------------------------------------------------------------
 106         typedef itk::ImageDuplicator<TInputImage> DuplicatorType;
 107         //--------------------------------------------------------------------------
 108         typedef itk::ConstNeighborhoodIterator<TInputImage> ConstNeighborhoodIterator;
 109         typedef itk::ImageRegionIterator<TInputImage> RegionIterator;
 110         //----------------------------------------------------------------------------
 111         typedef itk::SphereSpatialFunction<> SphereType;
 112         //----------------------------------------------------------------------------
 113         typedef itk::ConnectedThresholdImageFilter<TInputImage, TInputImage> ConnectedFilterType;
 114         //----------------------------------------------------------------------------
 115         typedef itk::SubtractImageFilter<TInputImage, TInputImage> SubtractImageFilterType;
 116         //----------------------------------------------------------------------------
 117         typedef itk::CastImageFilter<TInputImage, TInputImage2> CastFilterType;
 118         typedef itk::ConnectedComponentImageFilter<TInputImage2, TInputImage3> ConnectedComponentImageFilterType;
 119         //----------------------------------------------------------------------------
 120
 121         //----------------------------------------------------------------------------
 122         typedef std::vector<Edge*> EdgeVector;
 123         //----------------------------------------------------------------------------
 124         typedef std::queue<Vec3> Vec3Queue;
 125         typedef std::vector<Vec3> Vec3List;
 126 //
 127 /*
 128  * End of typedef declaration
 129  */
 130 }
 131
 132 #endif /* AIRWAYSTREETYPEDEFINITION_H_ */